bioregistry 0.13.12__tar.gz → 0.13.14__tar.gz

{bioregistry-0.13.12 → bioregistry-0.13.14}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioregistry
-Version: 0.13.12
+Version: 0.13.14
 Summary: Integrated registry of biological databases and nomenclatures
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
 Author: Charles Tapley Hoyt

{bioregistry-0.13.12 → bioregistry-0.13.14}/pyproject.toml

@@ -10,7 +10,7 @@ markers = [
 
 [project]
 name = "bioregistry"
-version = "0.13.12"
+version = "0.13.14"
 description = "Integrated registry of biological databases and nomenclatures"
 readme = "README.md"
 authors = [
@@ -254,7 +254,7 @@ known-first-party = [
 docstring-code-format = true
 
 [tool.bumpversion]
-current_version = "0.13.12"
+current_version = "0.13.14"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
 serialize = [
     "{major}.{minor}.{patch}-{release}+{build}",

{bioregistry-0.13.12 → bioregistry-0.13.14}/src/bioregistry/data/bioregistry.json

@@ -1851,8 +1851,8 @@
       "name": "Allotrope Merged Ontology Suite",
       "prefix": "afo",
       "uri_format": "http://purl.allotrope.org/ontologies$1",
-      "version": "2025-06-01",
-      "version.iri": "http://purl.allotrope.org/voc/afo/merged/REC/2025/06/merged-without-qudt-and-inferred"
+      "version": "2025-12-01",
+      "version.iri": "http://purl.allotrope.org/voc/afo/merged/REC/2025/12/merged-without-qudt-and-inferred"
     },
     "ontobee": {
       "library": "Not Specified/No",
@@ -7331,8 +7331,8 @@
       "name": "The Behaviour Change Intervention Ontology",
       "prefix": "bcio",
       "uri_format": "http://humanbehaviourchange.org/ontology/BCIO_$1",
-      "version": "2025-11-07",
-      "version.iri": "http://humanbehaviourchange.org/ontology/bcio.owl/2025-11-07"
+      "version": "2025-12-05",
+      "version.iri": "http://humanbehaviourchange.org/ontology/bcio.owl/2025-12-05"
     },
     "pattern": "^\\d{6}$",
     "providers": [
@@ -9621,11 +9621,11 @@
   "biolink": {
     "aberowl": {
       "description": "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations",
-      "download_owl": "http://aber-owl.net/media/ontologies/BIOLINK/74/biolink.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/BIOLINK/75/biolink.owl",
       "homepage": "https://biolink.github.io/biolink-model/",
       "name": "Biolink Model",
       "prefix": "BIOLINK",
-      "version": "4.3.4"
+      "version": "4.3.6"
     },
     "biolink": {
       "is_identifiers": false,
@@ -16745,7 +16745,7 @@
   "chebi": {
     "aberowl": {
       "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
-      "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/208/chebi.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/209/chebi.owl",
       "homepage": "http://www.ebi.ac.uk/chebi",
       "name": "Chemical Entities of Biological Interest",
       "prefix": "CHEBI"
@@ -19775,7 +19775,7 @@
       "name": "Cell Ontology",
       "prefix": "CL",
       "repository": "https://github.com/obophenotype/cell-ontology",
-      "version": "2025-11-25"
+      "version": "2025-12-17"
     },
     "biocontext": {
       "prefix": "CL"
@@ -19948,8 +19948,8 @@
       "name": "Cell Ontology",
       "prefix": "cl",
       "tracker": "https://github.com/obophenotype/cell-ontology/issues",
-      "version": "2025-11-25",
-      "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2025-11-25/cl.owl"
+      "version": "2025-12-17",
+      "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2025-12-17/cl.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -21022,7 +21022,7 @@
   "cmo": {
     "aberowl": {
       "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
-      "download_owl": "http://aber-owl.net/media/ontologies/CMO/165/cmo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/CMO/167/cmo.owl",
       "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
       "name": "Clinical measurement ontology",
       "prefix": "CMO"
@@ -21132,8 +21132,8 @@
       "name": "Clinical measurement ontology",
       "prefix": "cmo",
       "tracker": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues",
-      "version": "2.259",
-      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.259/cmo.owl"
+      "version": "2.260",
+      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.260/cmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -23572,7 +23572,7 @@
   "cob": {
     "aberowl": {
       "description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.",
-      "download_owl": "http://aber-owl.net/media/ontologies/COB/15/cob.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/COB/16/cob.owl",
       "homepage": "https://obofoundry.org/COB/",
       "name": "Core Ontology for Biology and Biomedicine",
       "prefix": "COB"
@@ -23624,8 +23624,8 @@
       "name": "Core Ontology for Biology and Biomedicine",
       "prefix": "cob",
       "tracker": "https://github.com/OBOFoundry/COB/issues",
-      "version": "2025-06-30",
-      "version.iri": "http://purl.obolibrary.org/obo/cob/releases/2025-06-30/cob.owl"
+      "version": "2025-12-12",
+      "version.iri": "http://purl.obolibrary.org/obo/cob/releases/2025-12-12/cob.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -38505,14 +38505,14 @@
         "email": "efo-users@lists.sourceforge.net",
         "name": "EFO User List"
       },
-      "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. EFO is developed by the EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT). We also add terms for external users when requested.",
+      "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. EFO is developed by the EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT). We also add terms for external users when requested., and for projects such as the NHGRI-EBI GWAS catalog. It combines parts of several biological ontologies, Cell Ontology and the Monarch Disease Ontology (MONDO). The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.",
       "example_uri": "http://www.orpha.net/ORDO/Orphanet_1390",
       "homepage": "http://www.ebi.ac.uk/efo/",
       "license": "Apache 2.0 License",
       "name": "Experimental Factor Ontology",
       "prefix": "EFO",
       "repository": "https://github.com/EBISPOT/efo",
-      "version": "3.84.0"
+      "version": "3.85.0"
     },
     "biocontext": {
       "prefix": "EFO"
@@ -38637,14 +38637,14 @@
     },
     "ols": {
       "contact": "efo-users@lists.sourceforge.net",
-      "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for OpenTargets.org",
+      "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the NHGRI-EBI GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, Cell Ontology and the Monarch Disease Ontology (MONDO). The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.",
       "download_owl": "http://www.ebi.ac.uk/efo/efo.owl",
       "homepage": "http://www.ebi.ac.uk/efo",
       "name": "Experimental Factor Ontology",
       "prefix": "efo",
       "uri_format": "http://www.ebi.ac.uk/efo/EFO_$1",
-      "version": "3.84.0",
-      "version.iri": "http://www.ebi.ac.uk/efo/releases/v3.84.0/efo.owl"
+      "version": "3.85.0",
+      "version.iri": "http://www.ebi.ac.uk/efo/releases/v3.85.0/efo.owl"
     },
     "ontobee": {
       "library": "Not Specified/No",
@@ -41152,7 +41152,7 @@
     "integbio": {
       "description": "ENSEMBL is a collection of automatically annotated genome databases for vertebrates and a number of eukaryotes, integrated with all other relevant biological data available.\nThe repository covers data on gene annotation, microarray probeset mapping and comparative genomics among many other topics.\nInformation may be downloaded by a variety of means: \nFor small amounts of data, an export option is suggested.\nFor larger amounts of data, an FTP site is provided from where a complete database may be downloaded in one of various formats, from flat files to MySQL dumps.",
       "fairsharing": "biodbcore-000330",
-      "homepage": "http://uswest.ensembl.org/index.html",
+      "homepage": "https://www.ensembl.org/index.html",
       "information_keywords": [
         "Sequence"
       ],
@@ -44383,11 +44383,11 @@
   "evorao": {
     "aberowl": {
       "description": "EVORAO is an ontology for standardized metadata supporting the sharing of pathogens as biological materials, their derived products, and associated services, organized into collections. While initially focused on virology, it is designed for interoperability and is extensible to other pathogens. EVORAO is compatible with DCAT, making it well-suited for efficiently cataloguing pathogen collections and related resources.",
-      "download_owl": "http://aber-owl.net/media/ontologies/EVORAO/17/evorao.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/EVORAO/18/evorao.owl",
       "homepage": "https://w3id.org/evorao",
       "name": "European Viral Outbreak Response Alliance Ontology",
       "prefix": "EVORAO",
-      "version": "1.0.10769"
+      "version": "1.0.10806"
     },
     "bioportal": {
       "contact": {
@@ -44562,12 +44562,11 @@
   },
   "exmo": {
     "aberowl": {
-      "description": "A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
-      "download_owl": "http://aber-owl.net/media/ontologies/EXMO/6/exmo.owl",
+      "description": "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
+      "download_owl": "http://aber-owl.net/media/ontologies/EXMO/7/exmo.owl",
       "homepage": "https://github.com/Exercise-Medicine-Ontology/EXMO",
       "name": "Exercise Medicine Ontology",
-      "prefix": "EXMO",
-      "version": "2025-06-05"
+      "prefix": "EXMO"
     },
     "bioportal": {
       "contact": {
@@ -44588,6 +44587,7 @@
       "aberowl": "EXMO",
       "bioportal": "EXMO",
       "obofoundry": "exmo",
+      "ols": "exmo",
       "ontobee": "EXMO"
     },
     "obofoundry": {
@@ -44613,6 +44613,15 @@
       ],
       "repository": "https://github.com/Exercise-Medicine-Ontology/EXMO"
     },
+    "ols": {
+      "description": "A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
+      "download_owl": "http://purl.obolibrary.org/obo/exmo.owl",
+      "homepage": "https://github.com/Exercise-Medicine-Ontology/EXMO",
+      "name": "EXMO",
+      "prefix": "exmo",
+      "tracker": "https://github.com/Exercise-Medicine-Ontology/EXMO/issues",
+      "version.iri": "http://purl.obolibrary.org/obo/exmo/2025-06-05/exmo.owl"
+    },
     "ontobee": {
       "library": "Library",
       "name": "Exercise Medicine Ontology",
@@ -58711,7 +58720,7 @@
   "hgnc": {
     "aberowl": {
       "description": "Human Genome Organisation (HUGO) Gene Nomenclature Committee at the European Bioinformatics Institute approves a gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database.",
-      "download_owl": "http://aber-owl.net/media/ontologies/HGNC/6/hgnc.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/HGNC/7/hgnc.owl",
       "homepage": "http://www.genenames.org/",
       "name": "HUGO Gene Nomenclature",
       "prefix": "HGNC",
@@ -76790,7 +76799,7 @@
   "mcro": {
     "aberowl": {
       "description": "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MCRO/2/mcro.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MCRO/3/mcro.owl",
       "homepage": "https://github.com/UTHealth-Ontology/MCRO",
       "name": "Model Card Report Ontology",
       "prefix": "MCRO"
@@ -80482,9 +80491,9 @@
       }
     ],
     "re3data": {
-      "description": "The MicroScope platform is an informatics infrastructure dedicated to the annotation and comparative analysis of microbial genomes and metagenomes.",
+      "description": "The MicroScope is a web platform for the analysis of prokaryotic genomes and expert functional annotation.",
       "doi": "10.17616/R31NJMGW",
-      "homepage": "https://mage.genoscope.cns.fr/microscope/home/index.php",
+      "homepage": "https://mage.genoscope.cns.fr/microscope/",
       "name": "MicroScope",
       "prefix": "r3d100012928",
       "synonyms": [
@@ -82537,7 +82546,7 @@
   "mmo": {
     "aberowl": {
       "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MMO/116/mmo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MMO/118/mmo.owl",
       "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
       "name": "Measurement method ontology",
       "prefix": "MMO"
@@ -82642,8 +82651,8 @@
       "name": "Measurement method ontology",
       "prefix": "mmo",
       "tracker": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues",
-      "version": "2.166",
-      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.166/mmo.owl"
+      "version": "2.168",
+      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.168/mmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -84083,7 +84092,7 @@
   "mondo": {
     "aberowl": {
       "description": "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MONDO/107/mondo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MONDO/108/mondo.owl",
       "homepage": "https://monarch-initiative.github.io/mondo",
       "name": "Mondo Disease Ontology",
       "prefix": "MONDO"
@@ -85154,7 +85163,7 @@
   "ms": {
     "aberowl": {
       "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MS/226/ms.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MS/228/ms.owl",
       "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
       "name": "Mass spectrometry ontology",
       "prefix": "MS"
@@ -85247,8 +85256,8 @@
       "name": "Mass spectrometry ontology",
       "prefix": "ms",
       "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
-      "version": "4.1.216",
-      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.216/ms.owl"
+      "version": "4.1.223",
+      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.223/ms.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -88110,8 +88119,8 @@
       "prefix": "ncbitaxon",
       "tracker": "https://github.com/obophenotype/ncbitaxon/issues",
       "uri_format": "http://purl.obolibrary.org/obo/NCBITaxon_$1",
-      "version": "2025-09-11",
-      "version.iri": "http://purl.obolibrary.org/obo/ncbitaxon/2025-09-11/ncbitaxon.owl"
+      "version": "2025-12-03",
+      "version.iri": "http://purl.obolibrary.org/obo/ncbitaxon/2025-12-03/ncbitaxon.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -102306,7 +102315,7 @@
   "peco": {
     "aberowl": {
       "description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.",
-      "download_owl": "http://aber-owl.net/media/ontologies/PECO/31/peco.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/PECO/32/peco.owl",
       "homepage": "http://planteome.org/",
       "name": "Plant Experimental Conditions Ontology",
       "prefix": "PECO"
@@ -102327,7 +102336,7 @@
         "https://doi.org/10.3732/ajb.1200222"
       ],
       "repository": "https://github.com/Planteome/plant-experimental-conditions-ontology",
-      "version": "July 2023"
+      "version": "December 2025"
     },
     "biocontext": {
       "prefix": "PECO"
@@ -102424,8 +102433,8 @@
       "name": "Plant Experimental Conditions Ontology",
       "prefix": "peco",
       "tracker": "https://github.com/Planteome/plant-experimental-conditions-ontology/issues",
-      "version": "2023-11-10",
-      "version.iri": "http://purl.obolibrary.org/obo/peco/releases/2023-11-10/peco.owl"
+      "version": "2025-12-02",
+      "version.iri": "http://purl.obolibrary.org/obo/peco/releases/2025-12-02/peco.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -106175,7 +106184,7 @@
     ],
     "fairsharing": {
       "abbreviation": "PMCID",
-      "description": "Identifier schema for PubMed Central, a U.S. National Institutes of Health's National Library of Medicine (NIH/NLM) free full-text archive of biomedical and life sciences journal literature.",
+      "description": "Identifier schema for PubMed Central, a U.S. National Institutes of Health's National Library of Medicine (NIH/NLM) free full-text archive of biomedical and life sciences journal literature, which gives the public access to papers at no cost. Papers collected under the NIH or participating funder's public access policy are archived in PMC. Each paper in PMC is assigned a unique identification number. A PMCID may be used by authors and awardees to demonstrate compliance with a funder's public access policy. A PMCID is assigned to an NIHMS submission when the following two criteria are met: the Final Approval step is complete, and the article has been matched to a PubMed record.",
       "domains": [
         "centrally registered identifier"
       ],
@@ -108633,7 +108642,7 @@
         "7971946",
         "2330366"
       ],
-      "status": "Active",
+      "status": "Inactive",
       "target_keywords": [
         "Protein"
       ]
@@ -110082,7 +110091,7 @@
         "email": "cooperl@oregonstate.edu",
         "name": "Laurel Cooper"
       },
-      "description": "The Plant Stress Ontology (PSO) describes biotic and abiotic stresses that a plant may encounter. An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies.",
+      "description": "The Plant Stress Ontology (PSO) describes biotic and abiotic stresses that a plant may encounter. An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies., An ontology describing biotic and abiotic plant stresses.",
       "example_uri": "http://purl.obolibrary.org/obo/PSO_0000013",
       "homepage": "https://planteome.org/",
       "license": "CC-BY-4.0",
@@ -110093,7 +110102,7 @@
         "https://planteome.org/references"
       ],
       "repository": "https://github.com/Planteome/plant-stress-ontology",
-      "version": "2023-11-14"
+      "version": "2025-12-16"
     },
     "bioportal": {
       "contact": {
@@ -110166,8 +110175,8 @@
       "name": "Plant Stress Ontology",
       "prefix": "pso",
       "tracker": "https://github.com/Planteome/plant-stress-ontology/issues",
-      "version": "2023-11-14",
-      "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2023-11-14/pso.owl"
+      "version": "2025-12-16",
+      "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2025-12-16/pso.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -110987,7 +110996,7 @@
     },
     "fairsharing": {
       "abbreviation": "PMID",
-      "description": "The PubMed Unique Identifier (PMID) is a 1- to 8-digit accession number with no leading zeros for managing and disseminating records at the PubMed repository. The PMID is a unique reference number for PubMed citations and is a distinctly different number from the PMCID and is used only for PubMed records. PMIDs are not reused after records are deleted. Prior to the 2004 version of PubMed (available December 3, 2003), many records contained a MEDLINE Unique Identifier in addition to the PMID. NLM no longer displays the MEDLINE Unique Identifier. The PMID has become the unique identifier for the MEDLINE record.",
+      "description": "The PubMed Unique Identifier (PMID) is a 1- to 8-digit accession number with no leading zeros for managing and disseminating records at the PubMed repository. PubMed is a citation and abstract database for biomedical literature, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher websites. The PMID is a unique reference number for PubMed citations and is a distinctly different number from the PMCID and is used only for PubMed records. PMIDs are not reused after records are deleted. Prior to the 2004 version of PubMed (available December 3, 2003), many records contained a MEDLINE Unique Identifier in addition to the PMID. NLM no longer displays the MEDLINE Unique Identifier. The PMID has become the unique identifier for the MEDLINE record. Each citation record in PubMed is assigned a unique identification number. A PMID is not the same as a PMCID and cannot be used to demonstrate compliance with the NIH or another participating funder's public access policy. ",
       "homepage": "https://www.nihms.nih.gov/help/glossary/#pmid",
       "name": "PubMed Unique Identifier",
       "prefix": "FAIRsharing.2b9b61",
@@ -111378,8 +111387,8 @@
       "name": "Pathway ontology",
       "prefix": "pw",
       "tracker": "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues",
-      "version": "7.95",
-      "version.iri": "http://purl.obolibrary.org/obo/pw/7.95/pw.owl"
+      "version": "7.96",
+      "version.iri": "http://purl.obolibrary.org/obo/pw/7.96/pw.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -112101,7 +112110,7 @@
   "rbo": {
     "aberowl": {
       "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
-      "download_owl": "http://aber-owl.net/media/ontologies/RBO/38/rbo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/RBO/39/rbo.owl",
       "homepage": "https://github.com/Radiobiology-Informatics-Consortium/RBO",
       "name": "Radiation Biology Ontology",
       "prefix": "RBO"
@@ -112168,8 +112177,8 @@
       "name": "Radiation Biology Ontology",
       "prefix": "rbo",
       "tracker": "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues",
-      "version": "2025-11-26",
-      "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-11-26/rbo.owl"
+      "version": "2025-12-11",
+      "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-12-11/rbo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -116137,7 +116146,8 @@
         "Resource metadata",
         "Annotation",
         "Data retrieval",
-        "centrally registered identifier"
+        "centrally registered identifier",
+        "FAIR"
       ],
       "homepage": "https://www.rrids.org/",
       "name": "Research Resource Identifier",
@@ -116180,6 +116190,10 @@
         "Omics",
         "Biology",
         "Chemistry"
+      ],
+      "user_defined_tags": [
+        "Resource Discovery",
+        "community resource"
       ]
     },
     "homepage": "https://rrid.site",
@@ -116338,7 +116352,7 @@
   "rs": {
     "aberowl": {
       "description": "Ontology of rat strains",
-      "download_owl": "http://aber-owl.net/media/ontologies/RS/202/rs.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/RS/203/rs.owl",
       "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
       "name": "Rat Strain Ontology",
       "prefix": "RS"
@@ -116441,8 +116455,8 @@
       "name": "Rat Strain Ontology",
       "prefix": "rs",
       "tracker": "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues",
-      "version": "6.262",
-      "version.iri": "http://purl.obolibrary.org/obo/rs/6.262/rs.owl"
+      "version": "6.263",
+      "version.iri": "http://purl.obolibrary.org/obo/rs/6.263/rs.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -122686,7 +122700,7 @@
   "slso": {
     "aberowl": {
       "description": "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.",
-      "download_owl": "http://aber-owl.net/media/ontologies/SLSO/11/slso.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/SLSO/13/slso.owl",
       "homepage": "https://github.com/nasa/LSDAO",
       "name": "Space Life Sciences Ontology",
       "prefix": "SLSO"
@@ -122738,8 +122752,8 @@
       "name": "Space Life Sciences Ontology",
       "prefix": "slso",
       "tracker": "https://github.com/nasa/LSDAO/issues",
-      "version": "2025-09-16",
-      "version.iri": "http://purl.obolibrary.org/obo/slso/releases/2025-09-16/slso.owl"
+      "version": "2025-12-11",
+      "version.iri": "http://purl.obolibrary.org/obo/slso/releases/2025-12-11/slso.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -123620,9 +123634,9 @@
       }
     ],
     "fairsharing": {
-      "abbreviation": "SNOMEDCT",
+      "abbreviation": "SNOMED CT",
       "description": "The Systematized Nomenclature of Medicine Clinical Terms is a reference terminology that can be used to cross-map standardized healthcare languages across healthcare disciplines.",
-      "homepage": "http://www.snomed.org/snomed-ct/five-step-briefing",
+      "homepage": "https://www.snomed.org/what-is-snomed-ct",
       "name": "Systematized Nomenclature of Medicine-Clinical Terms",
       "prefix": "FAIRsharing.d88s6e",
       "publications": [
@@ -135684,7 +135698,8 @@
     "bartoc": {
       "abbreviation": "time",
       "description": "OWL-Time is an OWL-2 DL ontology of temporal concepts, for describing the temporal properties of resources in the world or described in Web pages. The ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. Time positions and durations may be expressed using either the conventional (Gregorian) calendar and clock, or using another temporal reference system such as Unix-time, geologic time, or different calendars.",
-      "homepage": "http://www.w3.org/2006/time",
+      "homepage": "https://www.w3.org/TR/owl-time/",
+      "license": "CC-BY-4.0",
       "name": "Time Ontology",
       "prefix": "18311"
     },
@@ -137509,7 +137524,7 @@
   "uberon": {
     "aberowl": {
       "description": "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies",
-      "download_owl": "http://aber-owl.net/media/ontologies/UBERON/309/uberon.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/UBERON/310/uberon.owl",
       "homepage": "http://uberon.org",
       "name": "Uberon multi-species anatomy ontology",
       "prefix": "UBERON"
@@ -137695,8 +137710,8 @@
       "name": "Uber-anatomy ontology",
       "prefix": "uberon",
       "tracker": "https://github.com/obophenotype/uberon/issues",
-      "version": "2025-08-15",
-      "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2025-08-15/uberon.owl"
+      "version": "2025-12-04",
+      "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2025-12-04/uberon.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -141594,7 +141609,7 @@
       "homepage": "https://github.com/monarch-initiative/vertebrate-breed-ontology",
       "license": "CC BY 4.0",
       "license.url": "https://creativecommons.org/licenses/by/4.0/",
-      "logo": "https://github.com/tis-lab/closed-illustrations/blob/15058315cba1018e09572b28ebeee262a458b1c6/logos/vbo-logo/VBO-black-logo-stackedv2.png",
+      "logo": "https://raw.githubusercontent.com/tis-lab/closed-illustrations/master/logos/vbo-logo/VBO-black-logo-stackedv2.png",
       "name": "Vertebrate Breed Ontology",
       "preferredPrefix": "VBO",
       "prefix": "vbo",
@@ -143361,7 +143376,7 @@
   "vo": {
     "aberowl": {
       "description": "VO is a biomedical ontology in the domain of vaccine and vaccination.",
-      "download_owl": "http://aber-owl.net/media/ontologies/VO/310/vo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/VO/311/vo.owl",
       "homepage": "https://violinet.org/vaccineontology",
       "name": "Vaccine Ontology",
       "prefix": "VO"
@@ -143918,7 +143933,7 @@
   "vt": {
     "aberowl": {
       "description": "An ontology of traits covering vertebrates",
-      "download_owl": "http://aber-owl.net/media/ontologies/VT/140/vt.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/VT/141/vt.owl",
       "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
       "name": "Vertebrate trait ontology",
       "prefix": "VT"

{bioregistry-0.13.12 → bioregistry-0.13.14}/src/bioregistry/data/collections.json

@@ -1483,10 +1483,10 @@
     {
       "authors": [
         {
-          "email": "cthoyt@gmail.com",
-          "github": "cthoyt",
-          "name": "Charles Tapley Hoyt",
-          "orcid": "0000-0003-4423-4370"
+          "email": "damien@gerbi-gmb.de",
+          "github": "gouttegd",
+          "name": "Damien Goutte-Gattat",
+          "orcid": "0000-0002-6095-8718"
         }
       ],
       "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4BIOIMAGE",
@@ -1505,7 +1505,28 @@
         }
       ],
       "resources": [
-        "bioregistry"
+        "bioregistry",
+        "chebi",
+        "cl",
+        "clo",
+        "cmpo",
+        "dicom",
+        "doid",
+        "edam",
+        "efo",
+        "fbbi",
+        "go",
+        "mesh",
+        "mondo",
+        "mp",
+        "mpath",
+        "ncbitaxon",
+        "obi",
+        "radlex",
+        "snomedct",
+        "swo",
+        "uberon",
+        "uo"
       ]
     },
     {