bioregistry 0.13.12__tar.gz → 0.13.13__tar.gz

{bioregistry-0.13.12 → bioregistry-0.13.13}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioregistry
-Version: 0.13.12
+Version: 0.13.13
 Summary: Integrated registry of biological databases and nomenclatures
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
 Author: Charles Tapley Hoyt

{bioregistry-0.13.12 → bioregistry-0.13.13}/pyproject.toml

@@ -10,7 +10,7 @@ markers = [
 
 [project]
 name = "bioregistry"
-version = "0.13.12"
+version = "0.13.13"
 description = "Integrated registry of biological databases and nomenclatures"
 readme = "README.md"
 authors = [
@@ -254,7 +254,7 @@ known-first-party = [
 docstring-code-format = true
 
 [tool.bumpversion]
-current_version = "0.13.12"
+current_version = "0.13.13"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
 serialize = [
     "{major}.{minor}.{patch}-{release}+{build}",

{bioregistry-0.13.12 → bioregistry-0.13.13}/src/bioregistry/data/bioregistry.json

@@ -7331,8 +7331,8 @@
       "name": "The Behaviour Change Intervention Ontology",
       "prefix": "bcio",
       "uri_format": "http://humanbehaviourchange.org/ontology/BCIO_$1",
-      "version": "2025-11-07",
-      "version.iri": "http://humanbehaviourchange.org/ontology/bcio.owl/2025-11-07"
+      "version": "2025-12-05",
+      "version.iri": "http://humanbehaviourchange.org/ontology/bcio.owl/2025-12-05"
     },
     "pattern": "^\\d{6}$",
     "providers": [
@@ -9621,11 +9621,11 @@
   "biolink": {
     "aberowl": {
       "description": "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations",
-      "download_owl": "http://aber-owl.net/media/ontologies/BIOLINK/74/biolink.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/BIOLINK/75/biolink.owl",
       "homepage": "https://biolink.github.io/biolink-model/",
       "name": "Biolink Model",
       "prefix": "BIOLINK",
-      "version": "4.3.4"
+      "version": "4.3.6"
     },
     "biolink": {
       "is_identifiers": false,
@@ -16745,7 +16745,7 @@
   "chebi": {
     "aberowl": {
       "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
-      "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/208/chebi.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/209/chebi.owl",
       "homepage": "http://www.ebi.ac.uk/chebi",
       "name": "Chemical Entities of Biological Interest",
       "prefix": "CHEBI"
@@ -21022,7 +21022,7 @@
   "cmo": {
     "aberowl": {
       "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
-      "download_owl": "http://aber-owl.net/media/ontologies/CMO/165/cmo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/CMO/166/cmo.owl",
       "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
       "name": "Clinical measurement ontology",
       "prefix": "CMO"
@@ -21132,8 +21132,8 @@
       "name": "Clinical measurement ontology",
       "prefix": "cmo",
       "tracker": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues",
-      "version": "2.259",
-      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.259/cmo.owl"
+      "version": "2.260",
+      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.260/cmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -41152,7 +41152,7 @@
     "integbio": {
       "description": "ENSEMBL is a collection of automatically annotated genome databases for vertebrates and a number of eukaryotes, integrated with all other relevant biological data available.\nThe repository covers data on gene annotation, microarray probeset mapping and comparative genomics among many other topics.\nInformation may be downloaded by a variety of means: \nFor small amounts of data, an export option is suggested.\nFor larger amounts of data, an FTP site is provided from where a complete database may be downloaded in one of various formats, from flat files to MySQL dumps.",
       "fairsharing": "biodbcore-000330",
-      "homepage": "http://uswest.ensembl.org/index.html",
+      "homepage": "https://www.ensembl.org/index.html",
       "information_keywords": [
         "Sequence"
       ],
@@ -44383,11 +44383,11 @@
   "evorao": {
     "aberowl": {
       "description": "EVORAO is an ontology for standardized metadata supporting the sharing of pathogens as biological materials, their derived products, and associated services, organized into collections. While initially focused on virology, it is designed for interoperability and is extensible to other pathogens. EVORAO is compatible with DCAT, making it well-suited for efficiently cataloguing pathogen collections and related resources.",
-      "download_owl": "http://aber-owl.net/media/ontologies/EVORAO/17/evorao.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/EVORAO/18/evorao.owl",
       "homepage": "https://w3id.org/evorao",
       "name": "European Viral Outbreak Response Alliance Ontology",
       "prefix": "EVORAO",
-      "version": "1.0.10769"
+      "version": "1.0.10806"
     },
     "bioportal": {
       "contact": {
@@ -44588,6 +44588,7 @@
       "aberowl": "EXMO",
       "bioportal": "EXMO",
       "obofoundry": "exmo",
+      "ols": "exmo",
       "ontobee": "EXMO"
     },
     "obofoundry": {
@@ -44613,6 +44614,15 @@
       ],
       "repository": "https://github.com/Exercise-Medicine-Ontology/EXMO"
     },
+    "ols": {
+      "description": "A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
+      "download_owl": "http://purl.obolibrary.org/obo/exmo.owl",
+      "homepage": "https://github.com/Exercise-Medicine-Ontology/EXMO",
+      "name": "EXMO",
+      "prefix": "exmo",
+      "tracker": "https://github.com/Exercise-Medicine-Ontology/EXMO/issues",
+      "version.iri": "http://purl.obolibrary.org/obo/exmo/2025-06-05/exmo.owl"
+    },
     "ontobee": {
       "library": "Library",
       "name": "Exercise Medicine Ontology",
@@ -76790,7 +76800,7 @@
   "mcro": {
     "aberowl": {
       "description": "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MCRO/2/mcro.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MCRO/3/mcro.owl",
       "homepage": "https://github.com/UTHealth-Ontology/MCRO",
       "name": "Model Card Report Ontology",
       "prefix": "MCRO"
@@ -80482,9 +80492,9 @@
       }
     ],
     "re3data": {
-      "description": "The MicroScope platform is an informatics infrastructure dedicated to the annotation and comparative analysis of microbial genomes and metagenomes.",
+      "description": "The MicroScope is a web platform for the analysis of prokaryotic genomes and expert functional annotation.",
       "doi": "10.17616/R31NJMGW",
-      "homepage": "https://mage.genoscope.cns.fr/microscope/home/index.php",
+      "homepage": "https://mage.genoscope.cns.fr/microscope/",
       "name": "MicroScope",
       "prefix": "r3d100012928",
       "synonyms": [
@@ -82537,7 +82547,7 @@
   "mmo": {
     "aberowl": {
       "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MMO/116/mmo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MMO/117/mmo.owl",
       "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
       "name": "Measurement method ontology",
       "prefix": "MMO"
@@ -82642,8 +82652,8 @@
       "name": "Measurement method ontology",
       "prefix": "mmo",
       "tracker": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues",
-      "version": "2.166",
-      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.166/mmo.owl"
+      "version": "2.167",
+      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.167/mmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -84083,7 +84093,7 @@
   "mondo": {
     "aberowl": {
       "description": "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MONDO/107/mondo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MONDO/108/mondo.owl",
       "homepage": "https://monarch-initiative.github.io/mondo",
       "name": "Mondo Disease Ontology",
       "prefix": "MONDO"
@@ -85154,7 +85164,7 @@
   "ms": {
     "aberowl": {
       "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MS/226/ms.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MS/227/ms.owl",
       "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
       "name": "Mass spectrometry ontology",
       "prefix": "MS"
@@ -85247,8 +85257,8 @@
       "name": "Mass spectrometry ontology",
       "prefix": "ms",
       "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
-      "version": "4.1.216",
-      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.216/ms.owl"
+      "version": "4.1.221",
+      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.221/ms.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -102424,8 +102434,8 @@
       "name": "Plant Experimental Conditions Ontology",
       "prefix": "peco",
       "tracker": "https://github.com/Planteome/plant-experimental-conditions-ontology/issues",
-      "version": "2023-11-10",
-      "version.iri": "http://purl.obolibrary.org/obo/peco/releases/2023-11-10/peco.owl"
+      "version": "2025-12-02",
+      "version.iri": "http://purl.obolibrary.org/obo/peco/releases/2025-12-02/peco.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -106175,7 +106185,7 @@
     ],
     "fairsharing": {
       "abbreviation": "PMCID",
-      "description": "Identifier schema for PubMed Central, a U.S. National Institutes of Health's National Library of Medicine (NIH/NLM) free full-text archive of biomedical and life sciences journal literature.",
+      "description": "Identifier schema for PubMed Central, a U.S. National Institutes of Health's National Library of Medicine (NIH/NLM) free full-text archive of biomedical and life sciences journal literature, which gives the public access to papers at no cost. Papers collected under the NIH or participating funder's public access policy are archived in PMC. Each paper in PMC is assigned a unique identification number. A PMCID may be used by authors and awardees to demonstrate compliance with a funder's public access policy. A PMCID is assigned to an NIHMS submission when the following two criteria are met: the Final Approval step is complete, and the article has been matched to a PubMed record.",
       "domains": [
         "centrally registered identifier"
       ],
@@ -108633,7 +108643,7 @@
         "7971946",
         "2330366"
       ],
-      "status": "Active",
+      "status": "Inactive",
       "target_keywords": [
         "Protein"
       ]
@@ -110987,7 +110997,7 @@
     },
     "fairsharing": {
       "abbreviation": "PMID",
-      "description": "The PubMed Unique Identifier (PMID) is a 1- to 8-digit accession number with no leading zeros for managing and disseminating records at the PubMed repository. The PMID is a unique reference number for PubMed citations and is a distinctly different number from the PMCID and is used only for PubMed records. PMIDs are not reused after records are deleted. Prior to the 2004 version of PubMed (available December 3, 2003), many records contained a MEDLINE Unique Identifier in addition to the PMID. NLM no longer displays the MEDLINE Unique Identifier. The PMID has become the unique identifier for the MEDLINE record.",
+      "description": "The PubMed Unique Identifier (PMID) is a 1- to 8-digit accession number with no leading zeros for managing and disseminating records at the PubMed repository. PubMed is a citation and abstract database for biomedical literature, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher websites. The PMID is a unique reference number for PubMed citations and is a distinctly different number from the PMCID and is used only for PubMed records. PMIDs are not reused after records are deleted. Prior to the 2004 version of PubMed (available December 3, 2003), many records contained a MEDLINE Unique Identifier in addition to the PMID. NLM no longer displays the MEDLINE Unique Identifier. The PMID has become the unique identifier for the MEDLINE record. Each citation record in PubMed is assigned a unique identification number. A PMID is not the same as a PMCID and cannot be used to demonstrate compliance with the NIH or another participating funder's public access policy. ",
       "homepage": "https://www.nihms.nih.gov/help/glossary/#pmid",
       "name": "PubMed Unique Identifier",
       "prefix": "FAIRsharing.2b9b61",
@@ -116137,7 +116147,8 @@
         "Resource metadata",
         "Annotation",
         "Data retrieval",
-        "centrally registered identifier"
+        "centrally registered identifier",
+        "FAIR"
       ],
       "homepage": "https://www.rrids.org/",
       "name": "Research Resource Identifier",
@@ -116180,6 +116191,10 @@
         "Omics",
         "Biology",
         "Chemistry"
+      ],
+      "user_defined_tags": [
+        "Resource Discovery",
+        "community resource"
       ]
     },
     "homepage": "https://rrid.site",
@@ -116441,8 +116456,8 @@
       "name": "Rat Strain Ontology",
       "prefix": "rs",
       "tracker": "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues",
-      "version": "6.262",
-      "version.iri": "http://purl.obolibrary.org/obo/rs/6.262/rs.owl"
+      "version": "6.263",
+      "version.iri": "http://purl.obolibrary.org/obo/rs/6.263/rs.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -122686,7 +122701,7 @@
   "slso": {
     "aberowl": {
       "description": "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.",
-      "download_owl": "http://aber-owl.net/media/ontologies/SLSO/11/slso.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/SLSO/12/slso.owl",
       "homepage": "https://github.com/nasa/LSDAO",
       "name": "Space Life Sciences Ontology",
       "prefix": "SLSO"
@@ -122738,8 +122753,8 @@
       "name": "Space Life Sciences Ontology",
       "prefix": "slso",
       "tracker": "https://github.com/nasa/LSDAO/issues",
-      "version": "2025-09-16",
-      "version.iri": "http://purl.obolibrary.org/obo/slso/releases/2025-09-16/slso.owl"
+      "version": "2025-12-09",
+      "version.iri": "http://purl.obolibrary.org/obo/slso/releases/2025-12-09/slso.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -123620,9 +123635,9 @@
       }
     ],
     "fairsharing": {
-      "abbreviation": "SNOMEDCT",
+      "abbreviation": "SNOMED CT",
       "description": "The Systematized Nomenclature of Medicine Clinical Terms is a reference terminology that can be used to cross-map standardized healthcare languages across healthcare disciplines.",
-      "homepage": "http://www.snomed.org/snomed-ct/five-step-briefing",
+      "homepage": "https://www.snomed.org/what-is-snomed-ct",
       "name": "Systematized Nomenclature of Medicine-Clinical Terms",
       "prefix": "FAIRsharing.d88s6e",
       "publications": [
@@ -137509,7 +137524,7 @@
   "uberon": {
     "aberowl": {
       "description": "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies",
-      "download_owl": "http://aber-owl.net/media/ontologies/UBERON/309/uberon.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/UBERON/310/uberon.owl",
       "homepage": "http://uberon.org",
       "name": "Uberon multi-species anatomy ontology",
       "prefix": "UBERON"
@@ -137695,8 +137710,8 @@
       "name": "Uber-anatomy ontology",
       "prefix": "uberon",
       "tracker": "https://github.com/obophenotype/uberon/issues",
-      "version": "2025-08-15",
-      "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2025-08-15/uberon.owl"
+      "version": "2025-12-04",
+      "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2025-12-04/uberon.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -141594,7 +141609,7 @@
       "homepage": "https://github.com/monarch-initiative/vertebrate-breed-ontology",
       "license": "CC BY 4.0",
       "license.url": "https://creativecommons.org/licenses/by/4.0/",
-      "logo": "https://github.com/tis-lab/closed-illustrations/blob/15058315cba1018e09572b28ebeee262a458b1c6/logos/vbo-logo/VBO-black-logo-stackedv2.png",
+      "logo": "https://raw.githubusercontent.com/tis-lab/closed-illustrations/master/logos/vbo-logo/VBO-black-logo-stackedv2.png",
       "name": "Vertebrate Breed Ontology",
       "preferredPrefix": "VBO",
       "prefix": "vbo",
@@ -143361,7 +143376,7 @@
   "vo": {
     "aberowl": {
       "description": "VO is a biomedical ontology in the domain of vaccine and vaccination.",
-      "download_owl": "http://aber-owl.net/media/ontologies/VO/310/vo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/VO/311/vo.owl",
       "homepage": "https://violinet.org/vaccineontology",
       "name": "Vaccine Ontology",
       "prefix": "VO"
@@ -143918,7 +143933,7 @@
   "vt": {
     "aberowl": {
       "description": "An ontology of traits covering vertebrates",
-      "download_owl": "http://aber-owl.net/media/ontologies/VT/140/vt.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/VT/141/vt.owl",
       "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
       "name": "Vertebrate trait ontology",
       "prefix": "VT"

{bioregistry-0.13.12 → bioregistry-0.13.13}/src/bioregistry/external/aberowl/processed.json

@@ -755,11 +755,11 @@
   },
   "BIOLINK": {
     "description": "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations",
-    "download_owl": "http://aber-owl.net/media/ontologies/BIOLINK/74/biolink.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/BIOLINK/75/biolink.owl",
     "homepage": "https://biolink.github.io/biolink-model/",
     "name": "Biolink Model",
     "prefix": "BIOLINK",
-    "version": "4.3.4"
+    "version": "4.3.6"
   },
   "BIOMO": {
     "description": "The BIOMO ontology maps the HDF5 based BIOM format (http://biom-format.org/) to OWL, offering a method to convert a BIOM file to RDF and therefore publish it as Linked Data",
@@ -1385,7 +1385,7 @@
   },
   "CHEBI": {
     "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
-    "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/208/chebi.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/209/chebi.owl",
     "homepage": "http://www.ebi.ac.uk/chebi",
     "name": "Chemical Entities of Biological Interest",
     "prefix": "CHEBI"
@@ -1578,7 +1578,7 @@
   },
   "CMO": {
     "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
-    "download_owl": "http://aber-owl.net/media/ontologies/CMO/165/cmo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/CMO/166/cmo.owl",
     "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
     "name": "Clinical measurement ontology",
     "prefix": "CMO"
@@ -2937,20 +2937,20 @@
     "prefix": "EUPATH"
   },
   "EVI": {
-    "description": "The Evidence Graph ontology extends core concepts from the W3C Provenance Ontology PROV-O and Bioschemas' Profiles to describe evidence for correctness of findings in biomedical publications. The semantic data model in EVI is expressed using OWL2 Web Ontology Language.",
-    "download_owl": "http://aber-owl.net/media/ontologies/EVI/7/evi.owl",
-    "homepage": "https://evidencegraph.github.io/EVI/",
+    "description": "The Evidence Graph ontology extends core concepts from the W3C Provenance Ontology PROV-O and Bioschemas' Profiles to describe evidence for correctness of findings in biomedical publications. The semantic data model in EVI is expressed using OWL2 Web Ontology Language., The Evidence Graph ontology extends core concepts from the W3C Provenance Ontology PROV-O and Bioschemas' Profiles to describe evidence for correctness of findings in biomedical publications. The semantic data model in EVI is expressed using OWL2 Web Ontology Language (OWL2).",
+    "download_owl": "http://aber-owl.net/media/ontologies/EVI/9/evi.owl",
+    "homepage": "https://fairscape.github.io/EVI/",
     "name": "Evidence Graph Ontology",
     "prefix": "EVI",
-    "version": "1.1"
+    "version": "1.3"
   },
   "EVORAO": {
     "description": "EVORAO is an ontology for standardized metadata supporting the sharing of pathogens as biological materials, their derived products, and associated services, organized into collections. While initially focused on virology, it is designed for interoperability and is extensible to other pathogens. EVORAO is compatible with DCAT, making it well-suited for efficiently cataloguing pathogen collections and related resources.",
-    "download_owl": "http://aber-owl.net/media/ontologies/EVORAO/17/evorao.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/EVORAO/18/evorao.owl",
     "homepage": "https://w3id.org/evorao",
     "name": "European Viral Outbreak Response Alliance Ontology",
     "prefix": "EVORAO",
-    "version": "1.0.10769"
+    "version": "1.0.10806"
   },
   "EVS": {
     "description": "A collection of curated and standardized values used in metadata specifications produced by ADAMS (Accelerating DAta and Metadata Standards \u000bin the Environmental Health Sciences Study of Emerging Water Contaminants) group. These values are designed to ensure uniformity in the description of the various metadata standards produced by the group.",
@@ -4282,8 +4282,7 @@
   "HRAVS": {
     "description": "A collection of curated and standardized values used by the HuBMAP (Human BioMolecular Atlas Program) and SenNet (Cellular Senescence Network) metadata records to ensure uniformity in the description of samples and single-cell data produced by the consortium.",
     "name": "HuBMAP Research Attributes Value Set",
-    "prefix": "HRAVS",
-    "version": "2.13.10"
+    "prefix": "HRAVS"
   },
   "HRDO": {
     "description": "This resource was designed during a PhD in medical informatics (funded by INSERM, 2010-2012). Its components are (i) a core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and (ii) an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org). </ br> Research experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr).  Current production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database. This ontology is now available on Bioportal.",
@@ -5660,7 +5659,7 @@
   },
   "MCRO": {
     "description": "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MCRO/2/mcro.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MCRO/3/mcro.owl",
     "homepage": "https://github.com/UTHealth-Ontology/MCRO",
     "name": "Model Card Report Ontology",
     "prefix": "MCRO"
@@ -6041,7 +6040,7 @@
   },
   "MMO": {
     "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MMO/116/mmo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MMO/117/mmo.owl",
     "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
     "name": "Measurement method ontology",
     "prefix": "MMO"
@@ -6111,7 +6110,7 @@
   },
   "MONDO": {
     "description": "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MONDO/107/mondo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MONDO/108/mondo.owl",
     "homepage": "https://monarch-initiative.github.io/mondo",
     "name": "Mondo Disease Ontology",
     "prefix": "MONDO"
@@ -6199,7 +6198,7 @@
   },
   "MS": {
     "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MS/226/ms.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MS/227/ms.owl",
     "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
     "name": "Mass spectrometry ontology",
     "prefix": "MS"
@@ -6437,6 +6436,13 @@
     "prefix": "NDDO",
     "version": "0.2"
   },
+  "NDDRFO": {
+    "description": "Neurodegenerative Diseases Risk Factor Ontology (NDDRFO) is a disease-specific ontology that characterizes the knowledge field of risk factors for neurodegenerative diseases.",
+    "download_owl": "http://aber-owl.net/media/ontologies/NDDRFO/3/nddrfo.owl",
+    "name": "Neurodegenerative Disease Risk Factor Ontology",
+    "prefix": "NDDRFO",
+    "version": "V1.0.0"
+  },
   "NDF-RT": {
     "description": "Logically inferred version in OWL of the National Drug File – Reference Terminology (NDF-RT). NDF-RT is the terminology used by FDA and the FedMed collaboration to code these essential pharmacologic properties of medications: Mechanism of Action, Physiologic Effect, Structural Class.",
     "download_owl": "http://aber-owl.net/media/ontologies/NDF-RT/1/ndf-rt.owl",
@@ -8120,12 +8126,12 @@
     "version": "1.2"
   },
   "PGHDPROV": {
-    "description": "This ontology seeks to capture the provenance and data quality associated with PGHD shared with an EHR. The objective is to have an ontological formal representation of the provenance and contextual data related to PGHD shared with EHR, in order to offer clinicians a means to use PGHD data for decision making and treatment support.",
-    "download_owl": "http://aber-owl.net/media/ontologies/PGHDPROV/2/pghdprov.owl",
+    "description": "This ontology seeks to capture the provenance and data quality associated with PGHD shared with an EHR. The objective is to have an ontological formal representation of the provenance and contextual data related to PGHD shared with EHR, in order to offer clinicians a means to use PGHD data for decision making and treatment support., Patient Generated Health Data (PGHD) refer to health data collected by patient or their relatives. This ontology seeks to capture information about the data, the provenance and data quality associated with PGHD shared with an EHR.",
+    "download_owl": "http://aber-owl.net/media/ontologies/PGHDPROV/4/pghdprov.owl",
     "homepage": "https://w3id.org/pghdprovo",
     "name": "Context and Provenance Based Standardized Patient Generated Health Data Shared with an Electronic Health Record",
     "prefix": "PGHDPROV",
-    "version": "1.0.0"
+    "version": "1.0"
   },
   "PGHD_CONNECT": {
     "description": "Overarching ontology containg terms to describe the various types of Patient Generated Health Data that are generated on a specific patients. Meant for implementation in the VODAN-Africa project.",
@@ -9332,7 +9338,7 @@
   },
   "SLSO": {
     "description": "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.",
-    "download_owl": "http://aber-owl.net/media/ontologies/SLSO/11/slso.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/SLSO/12/slso.owl",
     "homepage": "https://github.com/nasa/LSDAO",
     "name": "Space Life Sciences Ontology",
     "prefix": "SLSO"
@@ -10171,7 +10177,7 @@
   },
   "UBERON": {
     "description": "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies",
-    "download_owl": "http://aber-owl.net/media/ontologies/UBERON/309/uberon.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/UBERON/310/uberon.owl",
     "homepage": "http://uberon.org",
     "name": "Uberon multi-species anatomy ontology",
     "prefix": "UBERON"
@@ -10307,10 +10313,10 @@
   },
   "VFB_DRIVERS": {
     "description": "An ontology of Drosophila melanogaster drivers and expression patterns., An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.",
-    "download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/193/vfb_drivers.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/194/vfb_drivers.owl",
     "name": "vfb_drivers",
     "prefix": "VFB_DRIVERS",
-    "version": "2025-12-01"
+    "version": "2025-12-08"
   },
   "VHO": {
     "description": "Ontology of terms used for annotating data in Virtual Fly Brain, including anatomical templates.",
@@ -10380,7 +10386,7 @@
   },
   "VO": {
     "description": "VO is a biomedical ontology in the domain of vaccine and vaccination.",
-    "download_owl": "http://aber-owl.net/media/ontologies/VO/310/vo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/VO/311/vo.owl",
     "homepage": "https://violinet.org/vaccineontology",
     "name": "Vaccine Ontology",
     "prefix": "VO"
@@ -10520,7 +10526,7 @@
   },
   "VT": {
     "description": "An ontology of traits covering vertebrates",
-    "download_owl": "http://aber-owl.net/media/ontologies/VT/140/vt.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/VT/141/vt.owl",
     "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
     "name": "Vertebrate trait ontology",
     "prefix": "VT"