biopipen 0.16.6__tar.gz → 0.16.7__tar.gz

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  1. {biopipen-0.16.6 → biopipen-0.16.7}/PKG-INFO +1 -1
  2. biopipen-0.16.7/biopipen/__init__.py +1 -0
  3. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/scrna.py +1 -1
  4. {biopipen-0.16.6 → biopipen-0.16.7}/pyproject.toml +1 -1
  5. {biopipen-0.16.6 → biopipen-0.16.7}/setup.py +1 -1
  6. biopipen-0.16.6/biopipen/__init__.py +0 -1
  7. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/core/__init__.py +0 -0
  8. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/core/config.py +0 -0
  9. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/core/config.toml +0 -0
  10. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/core/defaults.py +0 -0
  11. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/core/filters.py +0 -0
  12. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/core/proc.py +0 -0
  13. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/core/testing.py +0 -0
  14. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/__init__.py +0 -0
  15. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/bam.py +0 -0
  16. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/bcftools.py +0 -0
  17. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/bed.py +0 -0
  18. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/cnv.py +0 -0
  19. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/cnvkit.py +0 -0
  20. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/cnvkit_pipeline.py +0 -0
  21. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/csv.py +0 -0
  22. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/gene.py +0 -0
  23. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/gsea.py +0 -0
  24. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/misc.py +0 -0
  25. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/plot.py +0 -0
  26. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/rnaseq.py +0 -0
  27. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/scrna_basic.py +0 -0
  28. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/scrna_metabolic_landscape.py +0 -0
  29. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/tcgamaf.py +0 -0
  30. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/tcr.py +0 -0
  31. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/vcf.py +0 -0
  32. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/web.py +0 -0
  33. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/bam/CNAClinic.svelte +0 -0
  34. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/bam/CNVpytor.svelte +0 -0
  35. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/bam/ControlFREEC.svelte +0 -0
  36. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/cnv/AneuploidyScore.svelte +0 -0
  37. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/cnv/AneuploidyScoreSummary.svelte +0 -0
  38. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/cnv/TMADScoreSummary.svelte +0 -0
  39. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/cnvkit/CNVkitDiagram.svelte +0 -0
  40. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/cnvkit/CNVkitHeatmap.svelte +0 -0
  41. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/cnvkit/CNVkitScatter.svelte +0 -0
  42. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/gsea/FGSEA.svelte +0 -0
  43. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/gsea/GSEA.svelte +0 -0
  44. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/CellsDistribution.svelte +0 -0
  45. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/DimPlots.svelte +0 -0
  46. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/GeneExpressionInvistigation.svelte +0 -0
  47. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/MarkersFinder.svelte +0 -0
  48. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/MetaMarkers.svelte +0 -0
  49. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/RadarPlots.svelte +0 -0
  50. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/ScFGSEA.svelte +0 -0
  51. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/SeuratClusterStats.svelte +0 -0
  52. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/SeuratMap2Ref.svelte +0 -0
  53. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/SeuratPreparing.svelte +0 -0
  54. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna/TopExpressingGenes.svelte +0 -0
  55. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna_metabolic_landscape/MetabolicFeatures.svelte +0 -0
  56. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna_metabolic_landscape/MetabolicFeaturesIntraSubset.svelte +0 -0
  57. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna_metabolic_landscape/MetabolicPathwayActivity.svelte +0 -0
  58. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/scrna_metabolic_landscape/MetabolicPathwayHeterogeneity.svelte +0 -0
  59. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/tcr/CDR3AAPhyschem.svelte +0 -0
  60. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/tcr/CloneResidency.svelte +0 -0
  61. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/tcr/Immunarch.svelte +0 -0
  62. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/tcr/SampleDiversity.svelte +0 -0
  63. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/tcr/TCRClusteringStats.svelte +0 -0
  64. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/tcr/VJUsage.svelte +0 -0
  65. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/utils/gsea.liq +0 -0
  66. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/utils/misc.liq +0 -0
  67. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/vcf/TruvariBenchSummary.svelte +0 -0
  68. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/reports/vcf/TruvariConsistency.svelte +0 -0
  69. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bam/BamMerge.py +0 -0
  70. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bam/BamSplitChroms.py +0 -0
  71. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bam/CNAClinic.R +0 -0
  72. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bam/CNVpytor.py +0 -0
  73. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bam/ControlFREEC.py +0 -0
  74. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bcftools/BcftoolsAnnotate.py +0 -0
  75. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bcftools/BcftoolsFilter.py +0 -0
  76. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bcftools/BcftoolsSort.py +0 -0
  77. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bed/Bed2Vcf.py +0 -0
  78. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bed/BedConsensus.py +0 -0
  79. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bed/BedLiftOver.sh +0 -0
  80. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/bed/BedtoolsMerge.py +0 -0
  81. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnv/AneuploidyScore.R +0 -0
  82. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnv/AneuploidyScoreSummary.R +0 -0
  83. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnv/TMADScore.R +0 -0
  84. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnv/TMADScoreSummary.R +0 -0
  85. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitAccess.py +0 -0
  86. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitAutobin.py +0 -0
  87. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitBatch.py +0 -0
  88. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitCall.py +0 -0
  89. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitCoverage.py +0 -0
  90. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitDiagram.py +0 -0
  91. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitFix.py +0 -0
  92. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitGuessBaits.py +0 -0
  93. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitHeatmap.py +0 -0
  94. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitReference.py +0 -0
  95. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitScatter.py +0 -0
  96. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/CNVkitSegment.py +0 -0
  97. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/cnvkit/guess_baits.py +0 -0
  98. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/csv/BindRows.py +0 -0
  99. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/gene/GeneNameConversion.py +0 -0
  100. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/gsea/Enrichr.R +0 -0
  101. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/gsea/FGSEA.R +0 -0
  102. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/gsea/GSEA.R +0 -0
  103. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/gsea/PreRank.R +0 -0
  104. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/misc/Config2File.py +0 -0
  105. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/misc/Str2File.py +0 -0
  106. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/plot/Heatmap.R +0 -0
  107. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/plot/VennDiagram.R +0 -0
  108. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/rnaseq/UnitConversion.R +0 -0
  109. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/CellTypeAnnotation-direct.R +0 -0
  110. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/CellTypeAnnotation-hitype.R +0 -0
  111. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/CellTypeAnnotation-sccatch.R +0 -0
  112. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/CellTypeAnnotation-sctype.R +0 -0
  113. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/CellTypeAnnotation.R +0 -0
  114. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/CellsDistribution.R +0 -0
  115. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/DimPlots.R +0 -0
  116. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/ExprImpution-alra.R +0 -0
  117. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/ExprImpution-rmagic.R +0 -0
  118. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/ExprImpution-scimpute.R +0 -0
  119. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/ExprImpution.R +0 -0
  120. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/GeneExpressionInvistigation.R +0 -0
  121. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/MarkersFinder.R +0 -0
  122. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/MetaMarkers.R +0 -0
  123. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/RadarPlots.R +0 -0
  124. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SCImpute.R +0 -0
  125. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/ScFGSEA.R +0 -0
  126. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratClusterStats.R +0 -0
  127. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratClustering.R +0 -0
  128. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratFilter.R +0 -0
  129. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratLoading.R +0 -0
  130. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratMap2Ref.R +0 -0
  131. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratMetadataMutater.R +0 -0
  132. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratPreparing.R +0 -0
  133. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratSplit.R +0 -0
  134. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/SeuratSubset.R +0 -0
  135. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/Subset10X.R +0 -0
  136. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/TopExpressingGenes.R +0 -0
  137. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/Write10X.R +0 -0
  138. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna/sctype.R +0 -0
  139. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna_metabolic_landscape/MetabolicFeatures.R +0 -0
  140. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna_metabolic_landscape/MetabolicFeaturesIntraSubset.R +0 -0
  141. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna_metabolic_landscape/MetabolicPathwayActivity.R +0 -0
  142. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/scrna_metabolic_landscape/MetabolicPathwayHeterogeneity.R +0 -0
  143. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcgamaf/Maf2Vcf.py +0 -0
  144. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcgamaf/MafAddChr.py +0 -0
  145. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcgamaf/maf2vcf.pl +0 -0
  146. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Attach2Seurat.R +0 -0
  147. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/CDR3AAPhyschem.R +0 -0
  148. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/CloneResidency.R +0 -0
  149. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/CloneSizeQQPlot.R +0 -0
  150. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/GIANA/GIANA.py +0 -0
  151. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/GIANA/GIANA4.py +0 -0
  152. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/GIANA/Imgt_Human_TRBV.fasta +0 -0
  153. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/GIANA/query.py +0 -0
  154. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch-basic.R +0 -0
  155. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch-clonality.R +0 -0
  156. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch-diversity.R +0 -0
  157. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch-geneusage.R +0 -0
  158. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch-kmer.R +0 -0
  159. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch-overlap.R +0 -0
  160. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch-spectratyping.R +0 -0
  161. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch-tracking.R +0 -0
  162. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch.R +0 -0
  163. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/Immunarch2VDJtools.R +0 -0
  164. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/ImmunarchFilter.R +0 -0
  165. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/ImmunarchLoading.R +0 -0
  166. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/ImmunarchSplitIdents.R +0 -0
  167. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/SampleDiversity.R +0 -0
  168. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/TCRClustering.R +0 -0
  169. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/TCRClusteringStats.R +0 -0
  170. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/VJUsage.R +0 -0
  171. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/tcr/vdjtools-patch.sh +0 -0
  172. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/TruvariBench.sh +0 -0
  173. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/TruvariBenchSummary.R +0 -0
  174. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/TruvariConsistency.R +0 -0
  175. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/Vcf2Bed.py +0 -0
  176. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfAnno.py +0 -0
  177. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfDownSample.sh +0 -0
  178. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfFilter.py +0 -0
  179. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfFix.py +0 -0
  180. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfFix_utils.py +0 -0
  181. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfIndex.py +0 -0
  182. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfIntersect.py +0 -0
  183. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfLiftOver.sh +0 -0
  184. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/vcf/VcfSplitSamples.py +0 -0
  185. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/web/Download.py +0 -0
  186. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/scripts/web/DownloadList.py +0 -0
  187. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/__init__.py +0 -0
  188. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/gene.R +0 -0
  189. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/gene.py +0 -0
  190. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/gsea.R +0 -0
  191. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/io.R +0 -0
  192. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/misc.R +0 -0
  193. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/misc.py +0 -0
  194. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/mutate_helpers.R +0 -0
  195. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/plot.R +0 -0
  196. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/reference.py +0 -0
  197. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/rnaseq.R +0 -0
  198. {biopipen-0.16.6 → biopipen-0.16.7}/biopipen/utils/vcf.py +0 -0
{biopipen-0.16.6 → biopipen-0.16.7}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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  Name: biopipen
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- Version: 0.16.6
3
+ Version: 0.16.7
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  Summary: Bioinformatics processes/pipelines that can be run from `pipen run`
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  License: MIT
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  Author: pwwang
biopipen-0.16.7/biopipen/__init__.py ADDED
@@ -0,0 +1 @@
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+ __version__ = "0.16.7"
{biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/scrna.py RENAMED
@@ -458,7 +458,7 @@ class SeuratMetadataMutater(Proc):
458
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  r-dplyr:
459
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  - check: {{proc.lang}} <(echo "library(dplyr)")
460
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  """ # noqa: E501
461
- input = "srtobj:file, metafile:file, mutaters:var"
461
+ input = "srtobj:file, metafile:file"
462
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  output = "rdsfile:file:{{in.srtobj | stem}}.RDS"
463
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  lang = config.lang.rscript
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  envs = {"mutaters": {}}
{biopipen-0.16.6 → biopipen-0.16.7}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "biopipen"
3
- version = "0.16.6"
3
+ version = "0.16.7"
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4
  description = "Bioinformatics processes/pipelines that can be run from `pipen run`"
5
5
  authors = ["pwwang <pwwang@pwwang.com>"]
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  license = "MIT"
{biopipen-0.16.6 → biopipen-0.16.7}/setup.py RENAMED
@@ -72,7 +72,7 @@ entry_points = \
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  setup_kwargs = {
74
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  'name': 'biopipen',
75
- 'version': '0.16.6',
75
+ 'version': '0.16.7',
76
76
  'description': 'Bioinformatics processes/pipelines that can be run from `pipen run`',
77
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  'long_description': 'None',
78
78
  'author': 'pwwang',
biopipen-0.16.6/biopipen/__init__.py DELETED
@@ -1 +0,0 @@
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- __version__ = "0.16.6"
{biopipen-0.16.6 → biopipen-0.16.7}/biopipen/ns/bam.py RENAMED
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