biopb 0.1.0__tar.gz

biopb-0.1.0/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2024 Ji Yu
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

biopb-0.1.0/PKG-INFO

@@ -0,0 +1,41 @@
+Metadata-Version: 2.1
+Name: biopb
+Version: 0.1.0
+Summary: A place for collecting protobuf definitions for bio-research data
+Author-email: Ji Yu <jyu@uchc.edu>
+License: MIT License
+        
+        Copyright (c) 2024 Ji Yu
+        
+        Permission is hereby granted, free of charge, to any person obtaining a copy
+        of this software and associated documentation files (the "Software"), to deal
+        in the Software without restriction, including without limitation the rights
+        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+        copies of the Software, and to permit persons to whom the Software is
+        furnished to do so, subject to the following conditions:
+        
+        The above copyright notice and this permission notice shall be included in all
+        copies or substantial portions of the Software.
+        
+        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+        SOFTWARE.
+        
+Project-URL: Homepage, https://github.com/jiyuuchc/biopb
+Project-URL: Documentation, https://jiyuuchc.github.io/biopb/
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
+License-File: LICENSE
+
+# biopb
+A place for collecting protobuf definitions for bio-research data. Currently it has only two packages
+
+1. `biopb.ome` Microscopy data representation modeled after [OME-XML](https://ome-model.readthedocs.io/en/stable/ome-xml/index.html).
+2. `biopb.image` Image processing protocols. Current focus is single-cell segmentation, designed originally for the [Lacss](https://github.com/jiyuuchc/lacss/) project.
+
+## Documentation
+[Documentation](https://jiyuuchc.github.io/biopb/)

biopb-0.1.0/README.md

@@ -0,0 +1,8 @@
+# biopb
+A place for collecting protobuf definitions for bio-research data. Currently it has only two packages
+
+1. `biopb.ome` Microscopy data representation modeled after [OME-XML](https://ome-model.readthedocs.io/en/stable/ome-xml/index.html).
+2. `biopb.image` Image processing protocols. Current focus is single-cell segmentation, designed originally for the [Lacss](https://github.com/jiyuuchc/lacss/) project.
+
+## Documentation
+[Documentation](https://jiyuuchc.github.io/biopb/)

biopb-0.1.0/gen/python/biopb/image/bindata_pb2.py

@@ -0,0 +1,39 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: biopb/image/bindata.proto
+# Protobuf Python Version: 5.27.2
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    27,
+    2,
+    '',
+    'biopb/image/bindata.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n\x19\x62iopb/image/bindata.proto\x12\x0b\x62iopb.image\"o\n\x07\x42inData\x12\x0c\n\x04\x64\x61ta\x18\x01 \x01(\x0c\x12\x33\n\nendianness\x18\x02 \x01(\x0e\x32\x1f.biopb.image.BinData.Endianness\"!\n\nEndianness\x12\x07\n\x03\x42IG\x10\x00\x12\n\n\x06LITTLE\x10\x01\x42\x0f\n\x0b\x62iopb.imageP\x01\x62\x06proto3')
+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'biopb.image.bindata_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n\013biopb.imageP\001'
+  _globals['_BINDATA']._serialized_start=42
+  _globals['_BINDATA']._serialized_end=153
+  _globals['_BINDATA_ENDIANNESS']._serialized_start=120
+  _globals['_BINDATA_ENDIANNESS']._serialized_end=153
+# @@protoc_insertion_point(module_scope)

biopb-0.1.0/gen/python/biopb/image/bindata_pb2_grpc.py

@@ -0,0 +1,24 @@
+# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT!
+"""Client and server classes corresponding to protobuf-defined services."""
+import grpc
+import warnings
+
+
+GRPC_GENERATED_VERSION = '1.67.1'
+GRPC_VERSION = grpc.__version__
+_version_not_supported = False
+
+try:
+    from grpc._utilities import first_version_is_lower
+    _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION)
+except ImportError:
+    _version_not_supported = True
+
+if _version_not_supported:
+    raise RuntimeError(
+        f'The grpc package installed is at version {GRPC_VERSION},'
+        + f' but the generated code in biopb/image/bindata_pb2_grpc.py depends on'
+        + f' grpcio>={GRPC_GENERATED_VERSION}.'
+        + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}'
+        + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.'
+    )

biopb-0.1.0/gen/python/biopb/image/detection_request_pb2.py

@@ -0,0 +1,40 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: biopb/image/detection_request.proto
+# Protobuf Python Version: 5.27.2
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    27,
+    2,
+    '',
+    'biopb/image/detection_request.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+from google.protobuf import field_mask_pb2 as google_dot_protobuf_dot_field__mask__pb2
+from biopb.image import image_data_pb2 as biopb_dot_image_dot_image__data__pb2
+from biopb.image import detection_settings_pb2 as biopb_dot_image_dot_detection__settings__pb2
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n#biopb/image/detection_request.proto\x12\x0b\x62iopb.image\x1a google/protobuf/field_mask.proto\x1a\x1c\x62iopb/image/image_data.proto\x1a$biopb/image/detection_settings.proto\"\xaa\x01\n\x10\x44\x65tectionRequest\x12*\n\nimage_data\x18\x01 \x01(\x0b\x32\x16.biopb.image.ImageData\x12:\n\x12\x64\x65tection_settings\x18\x02 \x01(\x0b\x32\x1e.biopb.image.DetectionSettings\x12.\n\nfield_mask\x18\x03 \x01(\x0b\x32\x1a.google.protobuf.FieldMaskB\x0f\n\x0b\x62iopb.imageP\x01\x62\x06proto3')
+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'biopb.image.detection_request_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n\013biopb.imageP\001'
+  _globals['_DETECTIONREQUEST']._serialized_start=155
+  _globals['_DETECTIONREQUEST']._serialized_end=325
+# @@protoc_insertion_point(module_scope)

biopb-0.1.0/gen/python/biopb/image/detection_request_pb2_grpc.py

@@ -0,0 +1,24 @@
+# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT!
+"""Client and server classes corresponding to protobuf-defined services."""
+import grpc
+import warnings
+
+
+GRPC_GENERATED_VERSION = '1.67.1'
+GRPC_VERSION = grpc.__version__
+_version_not_supported = False
+
+try:
+    from grpc._utilities import first_version_is_lower
+    _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION)
+except ImportError:
+    _version_not_supported = True
+
+if _version_not_supported:
+    raise RuntimeError(
+        f'The grpc package installed is at version {GRPC_VERSION},'
+        + f' but the generated code in biopb/image/detection_request_pb2_grpc.py depends on'
+        + f' grpcio>={GRPC_GENERATED_VERSION}.'
+        + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}'
+        + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.'
+    )

biopb-0.1.0/gen/python/biopb/image/detection_response_pb2.py

@@ -0,0 +1,40 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: biopb/image/detection_response.proto
+# Protobuf Python Version: 5.27.2
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    27,
+    2,
+    '',
+    'biopb/image/detection_response.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+from biopb.image import roi_pb2 as biopb_dot_image_dot_roi__pb2
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n$biopb/image/detection_response.proto\x12\x0b\x62iopb.image\x1a\x15\x62iopb/image/roi.proto\"9\n\tScoredROI\x12\x1d\n\x03roi\x18\x01 \x01(\x0b\x32\x10.biopb.image.ROI\x12\r\n\x05score\x18\x02 \x01(\x02\"?\n\x11\x44\x65tectionResponse\x12*\n\ndetections\x18\x01 \x03(\x0b\x32\x16.biopb.image.ScoredROIB\x0f\n\x0b\x62iopb.imageP\x01\x62\x06proto3')
+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'biopb.image.detection_response_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n\013biopb.imageP\001'
+  _globals['_SCOREDROI']._serialized_start=76
+  _globals['_SCOREDROI']._serialized_end=133
+  _globals['_DETECTIONRESPONSE']._serialized_start=135
+  _globals['_DETECTIONRESPONSE']._serialized_end=198
+# @@protoc_insertion_point(module_scope)

biopb-0.1.0/gen/python/biopb/image/detection_response_pb2_grpc.py

@@ -0,0 +1,24 @@
+# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT!
+"""Client and server classes corresponding to protobuf-defined services."""
+import grpc
+import warnings
+
+
+GRPC_GENERATED_VERSION = '1.67.1'
+GRPC_VERSION = grpc.__version__
+_version_not_supported = False
+
+try:
+    from grpc._utilities import first_version_is_lower
+    _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION)
+except ImportError:
+    _version_not_supported = True
+
+if _version_not_supported:
+    raise RuntimeError(
+        f'The grpc package installed is at version {GRPC_VERSION},'
+        + f' but the generated code in biopb/image/detection_response_pb2_grpc.py depends on'
+        + f' grpcio>={GRPC_GENERATED_VERSION}.'
+        + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}'
+        + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.'
+    )

biopb-0.1.0/gen/python/biopb/image/detection_settings_pb2.py

@@ -0,0 +1,38 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: biopb/image/detection_settings.proto
+# Protobuf Python Version: 5.27.2
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    27,
+    2,
+    '',
+    'biopb/image/detection_settings.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+from google.protobuf import any_pb2 as google_dot_protobuf_dot_any__pb2
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n$biopb/image/detection_settings.proto\x12\x0b\x62iopb.image\x1a\x19google/protobuf/any.proto\"\xd5\x02\n\x11\x44\x65tectionSettings\x12\x1a\n\rmin_cell_area\x18\x01 \x01(\x02H\x01\x88\x01\x01\x12\x16\n\tmin_score\x18\x02 \x01(\x02H\x02\x88\x01\x01\x12#\n\x16segmentation_threshold\x18\x03 \x01(\x02H\x03\x88\x01\x01\x12\x14\n\x07nms_iou\x18\x04 \x01(\x02H\x04\x88\x01\x01\x12\x1c\n\x12\x63\x65ll_diameter_hint\x18\x06 \x01(\x02H\x00\x12\x16\n\x0cscaling_hint\x18\x07 \x01(\x02H\x00\x12\x12\n\nmodel_name\x18\x08 \x01(\t\x12\x31\n\x13model_configuration\x18\t \x01(\x0b\x32\x14.google.protobuf.AnyB\r\n\x0bresize_infoB\x10\n\x0e_min_cell_areaB\x0c\n\n_min_scoreB\x19\n\x17_segmentation_thresholdB\n\n\x08_nms_iouB\x0f\n\x0b\x62iopb.imageP\x01\x62\x06proto3')
+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'biopb.image.detection_settings_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n\013biopb.imageP\001'
+  _globals['_DETECTIONSETTINGS']._serialized_start=81
+  _globals['_DETECTIONSETTINGS']._serialized_end=422
+# @@protoc_insertion_point(module_scope)

biopb-0.1.0/gen/python/biopb/image/detection_settings_pb2_grpc.py

@@ -0,0 +1,24 @@
+# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT!
+"""Client and server classes corresponding to protobuf-defined services."""
+import grpc
+import warnings
+
+
+GRPC_GENERATED_VERSION = '1.67.1'
+GRPC_VERSION = grpc.__version__
+_version_not_supported = False
+
+try:
+    from grpc._utilities import first_version_is_lower
+    _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION)
+except ImportError:
+    _version_not_supported = True
+
+if _version_not_supported:
+    raise RuntimeError(
+        f'The grpc package installed is at version {GRPC_VERSION},'
+        + f' but the generated code in biopb/image/detection_settings_pb2_grpc.py depends on'
+        + f' grpcio>={GRPC_GENERATED_VERSION}.'
+        + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}'
+        + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.'
+    )

biopb-0.1.0/gen/python/biopb/image/image_data_pb2.py

@@ -0,0 +1,43 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: biopb/image/image_data.proto
+# Protobuf Python Version: 5.27.2
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    27,
+    2,
+    '',
+    'biopb/image/image_data.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+from biopb.image import roi_pb2 as biopb_dot_image_dot_roi__pb2
+from biopb.image import bindata_pb2 as biopb_dot_image_dot_bindata__pb2
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n\x1c\x62iopb/image/image_data.proto\x12\x0b\x62iopb.image\x1a\x15\x62iopb/image/roi.proto\x1a\x19\x62iopb/image/bindata.proto\"\xb6\x04\n\x06Pixels\x12%\n\x07\x62indata\x18\x03 \x01(\x0b\x32\x14.biopb.image.BinData\x12\x17\n\x0f\x64imension_order\x18\x04 \x01(\t\x12\r\n\x05\x64type\x18\x05 \x01(\t\x12\x0e\n\x06size_x\x18\t \x01(\r\x12\x0e\n\x06size_y\x18\n \x01(\r\x12\x0e\n\x06size_z\x18\x0b \x01(\r\x12\x0e\n\x06size_c\x18\x0c \x01(\r\x12\x0e\n\x06size_t\x18\r \x01(\r\x12\x1c\n\x0fphysical_size_x\x18\x0e \x01(\x02H\x00\x88\x01\x01\x12\x1c\n\x0fphysical_size_y\x18\x0f \x01(\x02H\x01\x88\x01\x01\x12\x1c\n\x0fphysical_size_z\x18\x10 \x01(\x02H\x02\x88\x01\x01\x12\x1a\n\x12physical_size_unit\x18\x11 \x01(\t\x12\x1b\n\x0etime_increment\x18\x12 \x01(\x02H\x03\x88\x01\x01\x12\x1b\n\x13time_increment_unit\x18\x15 \x01(\t\x12\x15\n\x08offset_x\x18\x16 \x01(\rH\x04\x88\x01\x01\x12\x15\n\x08offset_y\x18\x17 \x01(\rH\x05\x88\x01\x01\x12\x15\n\x08offset_z\x18\x18 \x01(\rH\x06\x88\x01\x01\x12\x15\n\x08offset_t\x18\x19 \x01(\rH\x07\x88\x01\x01\x42\x12\n\x10_physical_size_xB\x12\n\x10_physical_size_yB\x12\n\x10_physical_size_zB\x11\n\x0f_time_incrementB\x0b\n\t_offset_xB\x0b\n\t_offset_yB\x0b\n\t_offset_zB\x0b\n\t_offset_t\"1\n\x0fImageAnnotation\x12\x1e\n\x04rois\x18\x01 \x03(\x0b\x32\x10.biopb.image.ROI\"h\n\tImageData\x12#\n\x06pixels\x18\x01 \x01(\x0b\x32\x13.biopb.image.Pixels\x12\x36\n\x10image_annotation\x18\x02 \x01(\x0b\x32\x1c.biopb.image.ImageAnnotationB\x0f\n\x0b\x62iopb.imageP\x01\x62\x06proto3')
+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'biopb.image.image_data_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n\013biopb.imageP\001'
+  _globals['_PIXELS']._serialized_start=96
+  _globals['_PIXELS']._serialized_end=662
+  _globals['_IMAGEANNOTATION']._serialized_start=664
+  _globals['_IMAGEANNOTATION']._serialized_end=713
+  _globals['_IMAGEDATA']._serialized_start=715
+  _globals['_IMAGEDATA']._serialized_end=819
+# @@protoc_insertion_point(module_scope)

biopb-0.1.0/gen/python/biopb/image/image_data_pb2_grpc.py

@@ -0,0 +1,24 @@
+# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT!
+"""Client and server classes corresponding to protobuf-defined services."""
+import grpc
+import warnings
+
+
+GRPC_GENERATED_VERSION = '1.67.1'
+GRPC_VERSION = grpc.__version__
+_version_not_supported = False
+
+try:
+    from grpc._utilities import first_version_is_lower
+    _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION)
+except ImportError:
+    _version_not_supported = True
+
+if _version_not_supported:
+    raise RuntimeError(
+        f'The grpc package installed is at version {GRPC_VERSION},'
+        + f' but the generated code in biopb/image/image_data_pb2_grpc.py depends on'
+        + f' grpcio>={GRPC_GENERATED_VERSION}.'
+        + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}'
+        + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.'
+    )

biopb-0.1.0/gen/python/biopb/image/roi_pb2.py

@@ -0,0 +1,52 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: biopb/image/roi.proto
+# Protobuf Python Version: 5.27.2
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    27,
+    2,
+    '',
+    'biopb/image/roi.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+from biopb.image import bindata_pb2 as biopb_dot_image_dot_bindata__pb2
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n\x15\x62iopb/image/roi.proto\x12\x0b\x62iopb.image\x1a\x19\x62iopb/image/bindata.proto\"3\n\x05Point\x12\t\n\x01x\x18\x01 \x01(\x02\x12\t\n\x01y\x18\x02 \x01(\x02\x12\x0e\n\x01z\x18\x03 \x01(\x02H\x00\x88\x01\x01\x42\x04\n\x02_z\"[\n\tRectangle\x12$\n\x08top_left\x18\x01 \x01(\x0b\x32\x12.biopb.image.Point\x12(\n\x0c\x62ottom_right\x18\x02 \x01(\x0b\x32\x12.biopb.image.Point\"Y\n\x04Mask\x12)\n\trectangle\x18\x01 \x01(\x0b\x32\x16.biopb.image.Rectangle\x12&\n\x08\x62in_data\x18\x02 \x01(\x0b\x32\x14.biopb.image.BinData\"Q\n\x07\x45llipse\x12\"\n\x06\x63\x65nter\x18\x01 \x01(\x0b\x32\x12.biopb.image.Point\x12\"\n\x06radius\x18\x02 \x01(\x0b\x32\x12.biopb.image.Point\"-\n\x07Polygon\x12\"\n\x06points\x18\x01 \x03(\x0b\x32\x12.biopb.image.Point\"\xb1\x01\n\x04Mesh\x12!\n\x05verts\x18\x01 \x03(\x0b\x32\x12.biopb.image.Point\x12%\n\x05\x66\x61\x63\x65s\x18\x02 \x03(\x0b\x32\x16.biopb.image.Mesh.Face\x1a_\n\x04\x46\x61\x63\x65\x12\n\n\x02p1\x18\x01 \x01(\r\x12\n\n\x02p2\x18\x02 \x01(\r\x12\n\n\x02p3\x18\x03 \x01(\r\x12#\n\x07normals\x18\x04 \x03(\x0b\x32\x12.biopb.image.Point\x12\x0e\n\x06values\x18\x05 \x03(\x02\"\xf8\x01\n\x03ROI\x12#\n\x05point\x18\x01 \x01(\x0b\x32\x12.biopb.image.PointH\x00\x12+\n\trectangle\x18\x02 \x01(\x0b\x32\x16.biopb.image.RectangleH\x00\x12\'\n\x07\x65llipse\x18\x03 \x01(\x0b\x32\x14.biopb.image.EllipseH\x00\x12\'\n\x07polygon\x18\x04 \x01(\x0b\x32\x14.biopb.image.PolygonH\x00\x12!\n\x04mesh\x18\x05 \x01(\x0b\x32\x11.biopb.image.MeshH\x00\x12!\n\x04mask\x18\x06 \x01(\x0b\x32\x11.biopb.image.MaskH\x00\x42\x07\n\x05shapeB\x0f\n\x0b\x62iopb.imageP\x01\x62\x06proto3')
+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'biopb.image.roi_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n\013biopb.imageP\001'
+  _globals['_POINT']._serialized_start=65
+  _globals['_POINT']._serialized_end=116
+  _globals['_RECTANGLE']._serialized_start=118
+  _globals['_RECTANGLE']._serialized_end=209
+  _globals['_MASK']._serialized_start=211
+  _globals['_MASK']._serialized_end=300
+  _globals['_ELLIPSE']._serialized_start=302
+  _globals['_ELLIPSE']._serialized_end=383
+  _globals['_POLYGON']._serialized_start=385
+  _globals['_POLYGON']._serialized_end=430
+  _globals['_MESH']._serialized_start=433
+  _globals['_MESH']._serialized_end=610
+  _globals['_MESH_FACE']._serialized_start=515
+  _globals['_MESH_FACE']._serialized_end=610
+  _globals['_ROI']._serialized_start=613
+  _globals['_ROI']._serialized_end=861
+# @@protoc_insertion_point(module_scope)

biopb-0.1.0/gen/python/biopb/image/roi_pb2_grpc.py

@@ -0,0 +1,24 @@
+# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT!
+"""Client and server classes corresponding to protobuf-defined services."""
+import grpc
+import warnings
+
+
+GRPC_GENERATED_VERSION = '1.67.1'
+GRPC_VERSION = grpc.__version__
+_version_not_supported = False
+
+try:
+    from grpc._utilities import first_version_is_lower
+    _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION)
+except ImportError:
+    _version_not_supported = True
+
+if _version_not_supported:
+    raise RuntimeError(
+        f'The grpc package installed is at version {GRPC_VERSION},'
+        + f' but the generated code in biopb/image/roi_pb2_grpc.py depends on'
+        + f' grpcio>={GRPC_GENERATED_VERSION}.'
+        + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}'
+        + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.'
+    )

biopb-0.1.0/gen/python/biopb/image/rpc_object_detection_pb2.py

@@ -0,0 +1,40 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: biopb/image/rpc_object_detection.proto
+# Protobuf Python Version: 5.27.2
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    27,
+    2,
+    '',
+    'biopb/image/rpc_object_detection.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+from google.protobuf import any_pb2 as google_dot_protobuf_dot_any__pb2
+from biopb.image import detection_request_pb2 as biopb_dot_image_dot_detection__request__pb2
+from biopb.image import detection_response_pb2 as biopb_dot_image_dot_detection__response__pb2
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n&biopb/image/rpc_object_detection.proto\x12\x0b\x62iopb.image\x1a\x19google/protobuf/any.proto\x1a#biopb/image/detection_request.proto\x1a$biopb/image/detection_response.proto2\xdd\x02\n\x0fObjectDetection\x12M\n\x0cRunDetection\x12\x1d.biopb.image.DetectionRequest\x1a\x1e.biopb.image.DetectionResponse\x12W\n\x12RunDetectionStream\x12\x1d.biopb.image.DetectionRequest\x1a\x1e.biopb.image.DetectionResponse(\x01\x30\x01\x12U\n\x12RunDetectionOnGrid\x12\x1d.biopb.image.DetectionRequest\x1a\x1e.biopb.image.DetectionResponse(\x01\x12K\n\x12RunModelAdaptation\x12\x1d.biopb.image.DetectionRequest\x1a\x14.google.protobuf.Any(\x01\x42\x0f\n\x0b\x62iopb.imageP\x01\x62\x06proto3')
+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'biopb.image.rpc_object_detection_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n\013biopb.imageP\001'
+  _globals['_OBJECTDETECTION']._serialized_start=158
+  _globals['_OBJECTDETECTION']._serialized_end=507
+# @@protoc_insertion_point(module_scope)