biomechzoo 0.4.4__tar.gz → 0.4.7__tar.gz

{biomechzoo-0.4.4/src/biomechzoo.egg-info → biomechzoo-0.4.7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: biomechzoo
-Version: 0.4.4
+Version: 0.4.7
 Summary: Python implementation of the biomechZoo toolbox
 License-Expression: MIT
 Project-URL: Homepage, https://github.com/mcgillmotionlab/biomechzoo
@@ -31,3 +31,15 @@ This is a development version of the biomechzoo toolbox for python.
 - We use Numpy 2.2.6 for compatibility with https://pypi.org/project/numba/
 
 See also http://www.github.com/mcgillmotionlab/biomechzoo or http://www.biomechzoo.com for more information
+
+## Developer notes
+
+### Installing a dev environment
+conda create -n biomechzoo-dev python=3.11
+conda activate biomechzoo-dev
+pip install -e ".[dev]"
+
+### import issues
+if using PyCharm: 
+- Right-click on src/.
+- Select Mark Directory as → Sources Root.

{biomechzoo-0.4.4 → biomechzoo-0.4.7}/README.md

@@ -13,4 +13,16 @@ This is a development version of the biomechzoo toolbox for python.
 - We use Python 3.11 for compatibility with https://github.com/stanfordnmbl/opencap-processing
 - We use Numpy 2.2.6 for compatibility with https://pypi.org/project/numba/
 
-See also http://www.github.com/mcgillmotionlab/biomechzoo or http://www.biomechzoo.com for more information
+See also http://www.github.com/mcgillmotionlab/biomechzoo or http://www.biomechzoo.com for more information
+
+## Developer notes
+
+### Installing a dev environment
+conda create -n biomechzoo-dev python=3.11
+conda activate biomechzoo-dev
+pip install -e ".[dev]"
+
+### import issues
+if using PyCharm: 
+- Right-click on src/.
+- Select Mark Directory as → Sources Root.

{biomechzoo-0.4.4 → biomechzoo-0.4.7}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "biomechzoo"
-version = "0.4.4"
+version = "0.4.7"
 description = "Python implementation of the biomechZoo toolbox"
 readme = "README.md"
 requires-python = ">=3.11,<3.12"   # max version for opencap-process tools is 3.11

biomechzoo-0.4.7/src/__init__.py

@@ -0,0 +1,33 @@
+"""
+BiomechZoo: A Python toolbox for processing and analyzing human movement data.
+
+This package provides functions for converting, processing, analyzing,
+and visualizing biomechanical data (e.g., motion capture, EMG, kinetics).
+
+Example:
+    from biomechzoo import BiomechZoo
+    from biomechzoo.conversion import c3d2zoo
+
+    zoo = BiomechZoo()
+    zoo.conversion.c3d2zoo('path/to/data')
+"""
+
+# Import main class or entry point
+from .biomechzo import BiomechZoo
+
+# Import commonly used submodules
+from . import conversion
+from . import processing
+from . import plotting
+from . import utils
+
+# Define what gets exposed with "from biomechzoo import *"
+__all__ = [
+    "BiomechZoo",
+    "conversion",
+    "processing",
+    "plotting",
+    "utils",
+]
+
+__version__ = "0.4.4"

{biomechzoo-0.4.4 → biomechzoo-0.4.7}/src/biomechzoo/biomechzoo.py

@@ -20,7 +20,6 @@ from biomechzoo.biomech_ops.normalize_data import normalize_data
 from biomechzoo.biomech_ops.phase_angle_data import phase_angle_data
 from biomechzoo.biomech_ops.continuous_relative_phase_data import continuous_relative_phase_data
 
-
 class BiomechZoo:
     def __init__(self, in_folder, inplace=False, subfolders=None, name_contains=None, verbose=0):
         self.verbose = verbose

{biomechzoo-0.4.4 → biomechzoo-0.4.7}/src/biomechzoo/processing/explodechannel_data.py

@@ -1,3 +1,5 @@
+import copy
+
 def explodechannel_data(data, channels=None):
     """ Explodes 3D channels (n x 3 arrays) into separate X, Y, Z channels.
 
@@ -10,8 +12,7 @@ def explodechannel_data(data, channels=None):
         data_new (dict): Modified zoo dictionary with exploded channels.
     """
 
-    data_new = data.copy()
-
+    data_new = copy.deepcopy(data)
     # Find default channels if none provided
     if channels is None:
         channels = []

{biomechzoo-0.4.4 → biomechzoo-0.4.7}/src/biomechzoo/processing/partition_data.py

@@ -1,5 +1,6 @@
 from biomechzoo.utils.findfield import findfield
 import warnings
+import copy
 
 
 def partition_data(data, evt_start, evt_end):
@@ -9,11 +10,15 @@ def partition_data(data, evt_start, evt_end):
     e1, _ = findfield(data, evt_start)
     e2, _ = findfield(data, evt_end)
 
-    data_new = data.copy()
+    data_new = copy.deepcopy(data)
     for ch_name, ch_data in data_new.items():
         if ch_name != 'zoosystem':
+            line = ch_data['line']
             try:
-                data_new[ch_name]['line'] = ch_data[e1[0]:e2[0],]
+                if line.ndim ==1:
+                    data_new[ch_name]['line'] = line[e1[0]:e2[0]]
+                else:
+                    data_new[ch_name]['line'] = line[e1[0]:e2[0], :]
             except (IndexError, ValueError) as e:
                 # IndexError: if e1[0]:e2[0] goes beyond the available indices
                 # ValueError: less likely, but may arise with shape mismatches
@@ -29,6 +34,7 @@ def partition_data(data, evt_start, evt_end):
                     continue  # do not change outlier markers
                 else:
                     new_frame = original_frame - e1[0] + 1
+                    print(new_frame)
                     data_new[ch_name]['event'][event_name][0] = new_frame
 
     return data_new

{biomechzoo-0.4.4 → biomechzoo-0.4.7/src/biomechzoo.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: biomechzoo
-Version: 0.4.4
+Version: 0.4.7
 Summary: Python implementation of the biomechZoo toolbox
 License-Expression: MIT
 Project-URL: Homepage, https://github.com/mcgillmotionlab/biomechzoo
@@ -31,3 +31,15 @@ This is a development version of the biomechzoo toolbox for python.
 - We use Numpy 2.2.6 for compatibility with https://pypi.org/project/numba/
 
 See also http://www.github.com/mcgillmotionlab/biomechzoo or http://www.biomechzoo.com for more information
+
+## Developer notes
+
+### Installing a dev environment
+conda create -n biomechzoo-dev python=3.11
+conda activate biomechzoo-dev
+pip install -e ".[dev]"
+
+### import issues
+if using PyCharm: 
+- Right-click on src/.
+- Select Mark Directory as → Sources Root.

{biomechzoo-0.4.4 → biomechzoo-0.4.7}/src/biomechzoo.egg-info/SOURCES.txt

@@ -1,6 +1,7 @@
 LICENSE
 README.md
 pyproject.toml
+src/__init__.py
 src/biomechzoo/__init__.py
 src/biomechzoo/__main__.py
 src/biomechzoo/biomechzoo.py

{biomechzoo-0.4.4 → biomechzoo-0.4.7}/src/biomechzoo.egg-info/top_level.txt

@@ -1 +1,2 @@
+__init__
 biomechzoo