biomapper 0.3.2__tar.gz → 0.3.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (24) hide show
  1. {biomapper-0.3.2 → biomapper-0.3.3}/PKG-INFO +3 -1
  2. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/__init__.py +1 -1
  3. {biomapper-0.3.2 → biomapper-0.3.3}/pyproject.toml +3 -1
  4. {biomapper-0.3.2 → biomapper-0.3.3}/LICENSE +0 -0
  5. {biomapper-0.3.2 → biomapper-0.3.3}/README.md +0 -0
  6. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/core/__init__.py +0 -0
  7. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/core/protein_metadata_comparison.py +0 -0
  8. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/core/set_analysis.py +0 -0
  9. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/__init__.py +0 -0
  10. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/chebi_client.py +0 -0
  11. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/llm_mapper.py +0 -0
  12. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/metabolite_name_mapper.py +0 -0
  13. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/multi_provider_rag.py +0 -0
  14. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/rag_mapper.py +0 -0
  15. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/refmet_client.py +0 -0
  16. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/unichem_client.py +0 -0
  17. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/mapping/uniprot_focused_mapper.py +0 -0
  18. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/py.typed +0 -0
  19. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/schemas/__init__.py +0 -0
  20. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/schemas/llm_schema.py +0 -0
  21. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/schemas/provider_schemas.py +0 -0
  22. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/standardization/__init__.py +0 -0
  23. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/standardization/ramp_client.py +0 -0
  24. {biomapper-0.3.2 → biomapper-0.3.3}/biomapper/utils/__init__.py +0 -0
{biomapper-0.3.2 → biomapper-0.3.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: biomapper
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- Version: 0.3.2
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+ Version: 0.3.3
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  Summary: A unified Python toolkit for biological data harmonization and ontology mapping
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  Home-page: https://github.com/arpanauts/biomapper
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  License: MIT
@@ -21,6 +21,7 @@ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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  Provides-Extra: api
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  Provides-Extra: full
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  Requires-Dist: cloudpickle (>=3.0.0,<4.0.0)
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+ Requires-Dist: cryptography (>=43.0.1)
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  Requires-Dist: dspy-ai (>=2.1.8,<3.0.0)
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  Requires-Dist: langfuse (>=2.57.1,<3.0.0)
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  Requires-Dist: libChEBIpy (==1.0.10)
@@ -28,6 +29,7 @@ Requires-Dist: matplotlib (>=3.8.0,<4.0.0)
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  Requires-Dist: openai (>=1.14.0,<2.0.0)
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  Requires-Dist: pandas (>=2.0.0,<3.0.0)
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  Requires-Dist: python-dotenv (>=1.0.1,<2.0.0)
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+ Requires-Dist: python-multipart (==0.0.10)
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  Requires-Dist: pyyaml (>=6.0.1,<7.0.0)
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  Requires-Dist: requests (>=2.25.1,<3.0.0)
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  Requires-Dist: seaborn (>=0.13.0,<0.14.0)
{biomapper-0.3.2 → biomapper-0.3.3}/biomapper/__init__.py RENAMED
@@ -3,5 +3,5 @@
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  from .standardization import RaMPClient
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  from .core import SetAnalyzer
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- __version__ = "0.3.2"
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+ __version__ = "0.3.3"
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  __all__ = ["RaMPClient", "SetAnalyzer"]
{biomapper-0.3.2 → biomapper-0.3.3}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "biomapper"
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- version = "0.3.2"
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+ version = "0.3.3"
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  description = "A unified Python toolkit for biological data harmonization and ontology mapping"
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  authors = ["Trent Leslie <trent.leslie@phenomehealth.org>"]
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  license = "MIT"
@@ -43,6 +43,8 @@ openai = "^1.14.0"
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  python-dotenv = "^1.0.1"
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  dspy-ai = "^2.1.8"
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  cloudpickle = "^3.0.0"
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+ python-multipart = "0.0.10"
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+ cryptography = ">=43.0.1"
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  [tool.poetry.group.dev.dependencies]
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  pytest = "^7.4.3"
{biomapper-0.3.2 → biomapper-0.3.3}/LICENSE RENAMED
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{biomapper-0.3.2 → biomapper-0.3.3}/README.md RENAMED
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{biomapper-0.3.2 → biomapper-0.3.3}/biomapper/py.typed RENAMED
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