bioguider 0.2.28__tar.gz → 0.2.29__tar.gz

{bioguider-0.2.28 → bioguider-0.2.29}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioguider
-Version: 0.2.28
+Version: 0.2.29
 Summary: An AI-Powered package to help biomedical developers to generate clear documentation
 License: MIT
 Author: Cankun Wang

{bioguider-0.2.28 → bioguider-0.2.29}/bioguider/generation/output_manager.py

@@ -3,14 +3,14 @@ from __future__ import annotations
 import os
 import json
 from datetime import datetime
-from typing import Dict, List, Tuple
+from typing import Dict, List, Optional, Tuple
 
 from .models import OutputArtifact, GenerationManifest, PlannedEdit
 
 
 class OutputManager:
-    def __init__(self, base_outputs_dir: str = "outputs"):
-        self.base_outputs_dir = base_outputs_dir
+    def __init__(self, base_outputs_dir: Optional[str] = None):
+        self.base_outputs_dir = base_outputs_dir or "outputs"
 
     def prepare_output_dir(self, repo_url_or_name: str) -> str:
         repo_name = self._extract_repo_name(repo_url_or_name)

{bioguider-0.2.28 → bioguider-0.2.29}/bioguider/managers/generation_manager.py

@@ -2,7 +2,7 @@ from __future__ import annotations
 
 import os
 from pathlib import Path
-from typing import Tuple, Dict, List
+from typing import Optional, Tuple, Dict, List
 
 from bioguider.generation import (
     EvaluationReportLoader,
@@ -20,7 +20,7 @@ from bioguider.utils.file_utils import parse_repo_url
 
 
 class DocumentationGenerationManager:
-    def __init__(self, llm, step_callback):
+    def __init__(self, llm, step_callback, output_dir: Optional[str] = None):
         self.llm = llm
         self.step_callback = step_callback
         self.repo_url_or_path: str | None = None
@@ -30,7 +30,7 @@ class DocumentationGenerationManager:
         self.style_analyzer = StyleAnalyzer()
         self.planner = ChangePlanner()
         self.renderer = DocumentRenderer()
-        self.output = OutputManager()
+        self.output = OutputManager(base_outputs_dir=output_dir)
         self.llm_gen = LLMContentGenerator(llm)
         self.llm_cleaner = LLMCleaner(llm)
 

{bioguider-0.2.28 → bioguider-0.2.29}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "bioguider"
-version = "0.2.28"
+version = "0.2.29"
 description = "An AI-Powered package to help biomedical developers to generate clear documentation"
 authors = [
     "Cankun Wang <Cankun.Wang@osumc.edu>",