bioguider 0.2.11__tar.gz → 0.2.12__tar.gz

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  1. {bioguider-0.2.11 → bioguider-0.2.12}/PKG-INFO +1 -1
  2. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/evaluation_installation_task.py +1 -1
  3. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/evaluation_readme_task.py +4 -0
  4. {bioguider-0.2.11 → bioguider-0.2.12}/pyproject.toml +1 -1
  5. {bioguider-0.2.11 → bioguider-0.2.12}/LICENSE +0 -0
  6. {bioguider-0.2.11 → bioguider-0.2.12}/README.md +0 -0
  7. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/__init__.py +0 -0
  8. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/__init__.py +0 -0
  9. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/agent_task.py +0 -0
  10. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/agent_tools.py +0 -0
  11. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/agent_utils.py +0 -0
  12. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/collection_execute_step.py +0 -0
  13. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/collection_observe_step.py +0 -0
  14. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/collection_plan_step.py +0 -0
  15. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/collection_task.py +0 -0
  16. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/collection_task_utils.py +0 -0
  17. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/common_agent.py +0 -0
  18. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/common_agent_2step.py +0 -0
  19. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/common_step.py +0 -0
  20. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/dockergeneration_execute_step.py +0 -0
  21. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/dockergeneration_observe_step.py +0 -0
  22. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/dockergeneration_plan_step.py +0 -0
  23. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/dockergeneration_task.py +0 -0
  24. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/dockergeneration_task_utils.py +0 -0
  25. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/evaluation_task.py +0 -0
  26. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/identification_execute_step.py +0 -0
  27. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/identification_observe_step.py +0 -0
  28. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/identification_plan_step.py +0 -0
  29. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/identification_task.py +0 -0
  30. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/identification_task_utils.py +0 -0
  31. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/peo_common_step.py +0 -0
  32. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/prompt_utils.py +0 -0
  33. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/python_ast_repl_tool.py +0 -0
  34. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/agents/rag_collection_task.py +0 -0
  35. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/conversation.py +0 -0
  36. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/database/summarized_file_db.py +0 -0
  37. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/managers/evaluation_manager.py +0 -0
  38. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/rag/__init__.py +0 -0
  39. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/rag/config.py +0 -0
  40. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/rag/data_pipeline.py +0 -0
  41. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/rag/embedder.py +0 -0
  42. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/rag/rag.py +0 -0
  43. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/settings.py +0 -0
  44. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/utils/constants.py +0 -0
  45. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/utils/default.gitignore +0 -0
  46. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/utils/file_utils.py +0 -0
  47. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/utils/gitignore_checker.py +0 -0
  48. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/utils/pyphen_utils.py +0 -0
  49. {bioguider-0.2.11 → bioguider-0.2.12}/bioguider/utils/utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: bioguider
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- Version: 0.2.11
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+ Version: 0.2.12
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  Summary: An AI-Powered package to help biomedical developers to generate clear documentation
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  License: MIT
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  Author: Cankun Wang
@@ -29,7 +29,7 @@ Your task is to analyze the provided files related to installation and generate
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  ### **Evaluation Criteria**
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- 1. **Installation Available**: Is the installation documents accessible and present?
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+ 1. **Installation Available**: Is the installation section in document (like README.md or INSTALLATION)?
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  * Output: `Yes` or `No`
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  2. **Installation Tutorial**: Is the installation tutorial provided?
@@ -84,6 +84,8 @@ Your final report must **exactly match** the following format. Do not add or omi
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  **License Information Included:**
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  * score: [Yes / No]
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  * suggestions: <suggestions to improve **License Information**>
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+ ** Code contributor / Author information included
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+ * score: [Yes / No]
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  **Overall Score:** [Poor / Fair / Good / Excellent]
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  ---
@@ -257,6 +259,7 @@ class StructuredEvaluationREADMEResult(BaseModel):
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  dependency_suggestions: Optional[str]=Field(description="Suggestions if dependencies are not clearly stated")
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  license_score: Optional[bool]=Field(description="A boolean value, Are contributor or maintainer details provided?")
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  license_suggestions: Optional[str]=Field(description="Suggestions to improve license information")
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+ contributor_author_score: Optional[bool]=Field(description="A boolean value. are contributors or author included?")
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  overall_score: str=Field(description="A overall scroll for the README quality, could be `Poor`, `Fair`, `Good`, or `Excellent`")
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  class EvaluationREADMEResult(BaseModel):
@@ -354,6 +357,7 @@ class EvaluationREADMETask(EvaluationTask):
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  dependency_suggestions="No dependency provided",
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  license_score=False,
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  license_suggestions="No license information",
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+ contributor_author_score=False,
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  overall_score="Poor",
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  ),
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  "structured_reasoning_process": f"{readme_file} is an empty file.",
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "bioguider"
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- version = "0.2.11"
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+ version = "0.2.12"
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  description = "An AI-Powered package to help biomedical developers to generate clear documentation"
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  authors = [
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  "Cankun Wang <Cankun.Wang@osumc.edu>",
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