biofiles 0.1.4__tar.gz → 0.1.5__tar.gz

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Files changed (31) hide show
  1. {biofiles-0.1.4 → biofiles-0.1.5}/PKG-INFO +1 -1
  2. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/dialects/gencode.py +4 -2
  3. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/dialects/genomic_base.py +8 -0
  4. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles.egg-info/PKG-INFO +1 -1
  5. {biofiles-0.1.4 → biofiles-0.1.5}/pyproject.toml +1 -1
  6. {biofiles-0.1.4 → biofiles-0.1.5}/LICENSE +0 -0
  7. {biofiles-0.1.4 → biofiles-0.1.5}/README.md +0 -0
  8. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/__init__.py +0 -0
  9. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/bam.py +0 -0
  10. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/common.py +0 -0
  11. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/dialects/__init__.py +0 -0
  12. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/dialects/detector.py +0 -0
  13. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/dialects/refseq.py +0 -0
  14. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/dialects/stringtie.py +0 -0
  15. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/fai.py +0 -0
  16. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/fasta.py +0 -0
  17. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/gff.py +0 -0
  18. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/gtf.py +0 -0
  19. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/repeatmasker.py +0 -0
  20. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/types/__init__.py +0 -0
  21. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/types/alignment.py +0 -0
  22. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/types/feature.py +0 -0
  23. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/types/repeat.py +0 -0
  24. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/types/sequence.py +0 -0
  25. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/utility/__init__.py +0 -0
  26. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/utility/cli.py +0 -0
  27. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles/utility/feature.py +0 -0
  28. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles.egg-info/SOURCES.txt +0 -0
  29. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles.egg-info/dependency_links.txt +0 -0
  30. {biofiles-0.1.4 → biofiles-0.1.5}/biofiles.egg-info/top_level.txt +0 -0
  31. {biofiles-0.1.4 → biofiles-0.1.5}/setup.cfg +0 -0
{biofiles-0.1.4 → biofiles-0.1.5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: biofiles
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- Version: 0.1.4
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+ Version: 0.1.5
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  Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
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  Author-email: Tigran Saluev <tigran@saluev.com>
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  Maintainer-email: Tigran Saluev <tigran@saluev.com>
{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/dialects/gencode.py RENAMED
@@ -9,6 +9,8 @@ from biofiles.dialects.genomic_base import (
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  Exon as BaseExon,
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  CDS as BaseCDS,
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  UTR as BaseUTR,
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+ FivePrimeUTR as BaseFivePrimeUTR,
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+ ThreePrimeUTR as BaseThreePrimeUTR,
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  )
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  from biofiles.types.feature import (
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  Feature,
@@ -196,13 +198,13 @@ class UTR(BaseUTR, type="utr"):
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  gene: Gene = utr_gene
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- class FivePrimeUTR(UTR, type="five_prime_utr"):
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+ class FivePrimeUTR(BaseFivePrimeUTR, type="five_prime_utr"):
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  id: NoneType = no_id_field()
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  transcript: Transcript = five_prime_utr_transcript
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  gene: Gene = five_prime_utr_gene
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- class ThreePrimeUTR(UTR, type="three_prime_utr"):
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+ class ThreePrimeUTR(BaseThreePrimeUTR, type="three_prime_utr"):
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  id: NoneType = no_id_field()
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  transcript: Transcript = three_prime_utr_transcript
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  gene: Gene = three_prime_utr_gene
{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/dialects/genomic_base.py RENAMED
@@ -27,3 +27,11 @@ class CDS(Feature):
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  class UTR(Feature):
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  transcript: Transcript
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+
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+
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+ class FivePrimeUTR(UTR):
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+ pass
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+
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+
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+ class ThreePrimeUTR(UTR):
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+ pass
{biofiles-0.1.4 → biofiles-0.1.5}/biofiles.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: biofiles
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- Version: 0.1.4
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+ Version: 0.1.5
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  Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
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  Author-email: Tigran Saluev <tigran@saluev.com>
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  Maintainer-email: Tigran Saluev <tigran@saluev.com>
{biofiles-0.1.4 → biofiles-0.1.5}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "biofiles"
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- version = "0.1.4"
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+ version = "0.1.5"
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  authors = [
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  { name="Tigran Saluev", email="tigran@saluev.com" },
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  ]
{biofiles-0.1.4 → biofiles-0.1.5}/LICENSE RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/README.md RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/__init__.py RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/bam.py RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/common.py RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/fai.py RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/fasta.py RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/gff.py RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/biofiles/gtf.py RENAMED
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{biofiles-0.1.4 → biofiles-0.1.5}/setup.cfg RENAMED
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