biofiles 0.1.3__tar.gz → 0.1.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. {biofiles-0.1.3 → biofiles-0.1.4}/PKG-INFO +1 -1
  2. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/dialects/genomic_base.py +3 -0
  3. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles.egg-info/PKG-INFO +1 -1
  4. {biofiles-0.1.3 → biofiles-0.1.4}/pyproject.toml +1 -1
  5. {biofiles-0.1.3 → biofiles-0.1.4}/LICENSE +0 -0
  6. {biofiles-0.1.3 → biofiles-0.1.4}/README.md +0 -0
  7. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/__init__.py +0 -0
  8. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/bam.py +0 -0
  9. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/common.py +0 -0
  10. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/dialects/__init__.py +0 -0
  11. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/dialects/detector.py +0 -0
  12. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/dialects/gencode.py +0 -0
  13. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/dialects/refseq.py +0 -0
  14. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/dialects/stringtie.py +0 -0
  15. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/fai.py +0 -0
  16. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/fasta.py +0 -0
  17. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/gff.py +0 -0
  18. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/gtf.py +0 -0
  19. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/repeatmasker.py +0 -0
  20. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/types/__init__.py +0 -0
  21. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/types/alignment.py +0 -0
  22. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/types/feature.py +0 -0
  23. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/types/repeat.py +0 -0
  24. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/types/sequence.py +0 -0
  25. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/utility/__init__.py +0 -0
  26. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/utility/cli.py +0 -0
  27. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles/utility/feature.py +0 -0
  28. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles.egg-info/SOURCES.txt +0 -0
  29. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles.egg-info/dependency_links.txt +0 -0
  30. {biofiles-0.1.3 → biofiles-0.1.4}/biofiles.egg-info/top_level.txt +0 -0
  31. {biofiles-0.1.3 → biofiles-0.1.4}/setup.cfg +0 -0
{biofiles-0.1.3 → biofiles-0.1.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: biofiles
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- Version: 0.1.3
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+ Version: 0.1.4
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  Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
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  Author-email: Tigran Saluev <tigran@saluev.com>
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  Maintainer-email: Tigran Saluev <tigran@saluev.com>
{biofiles-0.1.3 → biofiles-0.1.4}/biofiles/dialects/genomic_base.py RENAMED
@@ -2,18 +2,21 @@ from biofiles.types.feature import Feature
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  class Gene(Feature):
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+ id: str
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  biotype: str
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  name: str
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  transcripts: list["Transcript"]
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  class Transcript(Feature):
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+ id: str
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  biotype: str
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  gene: Gene
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  exons: list["Exon"]
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  class Exon(Feature):
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+ number: int
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  transcript: Transcript
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  cdss: list["CDS"]
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{biofiles-0.1.3 → biofiles-0.1.4}/biofiles.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: biofiles
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- Version: 0.1.3
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+ Version: 0.1.4
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  Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
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  Author-email: Tigran Saluev <tigran@saluev.com>
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  Maintainer-email: Tigran Saluev <tigran@saluev.com>
{biofiles-0.1.3 → biofiles-0.1.4}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "biofiles"
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- version = "0.1.3"
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+ version = "0.1.4"
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  authors = [
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  { name="Tigran Saluev", email="tigran@saluev.com" },
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  ]
{biofiles-0.1.3 → biofiles-0.1.4}/LICENSE RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/README.md RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/biofiles/__init__.py RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/biofiles/bam.py RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/biofiles/common.py RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/biofiles/fai.py RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/biofiles/fasta.py RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/biofiles/gff.py RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/biofiles/gtf.py RENAMED
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{biofiles-0.1.3 → biofiles-0.1.4}/setup.cfg RENAMED
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