biofiles 0.0.3__tar.gz → 0.0.4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {biofiles-0.0.3 → biofiles-0.0.4}/PKG-INFO +2 -2
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/gff.py +4 -4
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles.egg-info/PKG-INFO +2 -2
- {biofiles-0.0.3 → biofiles-0.0.4}/pyproject.toml +1 -1
- {biofiles-0.0.3 → biofiles-0.0.4}/LICENSE +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/README.md +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/__init__.py +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/common.py +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/fasta.py +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/repeatmasker.py +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/types/__init__.py +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/types/feature.py +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/types/repeat.py +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles/types/sequence.py +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles.egg-info/SOURCES.txt +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles.egg-info/dependency_links.txt +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/biofiles.egg-info/top_level.txt +0 -0
- {biofiles-0.0.3 → biofiles-0.0.4}/setup.cfg +0 -0
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Metadata-Version: 2.
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Metadata-Version: 2.2
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Name: biofiles
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Version: 0.0.
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Version: 0.0.4
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Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
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Author-email: Tigran Saluev <tigran@saluev.com>
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Maintainer-email: Tigran Saluev <tigran@saluev.com>
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@@ -7,7 +7,7 @@ from typing import Iterator, cast, TextIO
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from biofiles.common import Strand, Reader, Writer
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from biofiles.types.feature import Feature, Gene, Exon
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__all__ = ["GFFReader"]
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__all__ = ["GFFReader", "GFF3Writer"]
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@dataclass
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feature.type_,
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str(feature.start_original),
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str(feature.end_original),
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str(feature.score) if feature.score is not None else "",
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str(feature.strand) if feature.strand is not None else "",
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str(feature.phase) if feature.phase is not None else "",
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str(feature.score) if feature.score is not None else ".",
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str(feature.strand) if feature.strand is not None else ".",
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str(feature.phase) if feature.phase is not None else ".",
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";".join(f"{k}={v}" for k, v in feature.attributes.items()),
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)
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self._output.write("\t".join(fields))
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Metadata-Version: 2.
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Metadata-Version: 2.2
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Name: biofiles
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Version: 0.0.
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Version: 0.0.4
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Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
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Author-email: Tigran Saluev <tigran@saluev.com>
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Maintainer-email: Tigran Saluev <tigran@saluev.com>
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