biofiles 0.0.11__tar.gz → 0.0.12__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {biofiles-0.0.11 → biofiles-0.0.12}/PKG-INFO +3 -2
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/types/alignment.py +9 -1
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/utility/feature.py +1 -1
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles.egg-info/PKG-INFO +3 -2
- {biofiles-0.0.11 → biofiles-0.0.12}/pyproject.toml +1 -1
- {biofiles-0.0.11 → biofiles-0.0.12}/LICENSE +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/README.md +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/__init__.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/bam.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/common.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/fai.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/fasta.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/gff.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/gtf.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/repeatmasker.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/types/__init__.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/types/feature.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/types/repeat.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/types/sequence.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/utility/__init__.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles/utility/cli.py +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles.egg-info/SOURCES.txt +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles.egg-info/dependency_links.txt +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/biofiles.egg-info/top_level.txt +0 -0
- {biofiles-0.0.11 → biofiles-0.0.12}/setup.cfg +0 -0
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Metadata-Version: 2.
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Metadata-Version: 2.4
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Name: biofiles
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Version: 0.0.
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Version: 0.0.12
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Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
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Author-email: Tigran Saluev <tigran@saluev.com>
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Maintainer-email: Tigran Saluev <tigran@saluev.com>
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@@ -36,6 +36,7 @@ Classifier: Programming Language :: Python :: 3.12
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Requires-Python: >=3.10
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Dynamic: license-file
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# biofiles
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from dataclasses import dataclass
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__all__ = [
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__all__ = [
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"Alignment",
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"BAMFlag",
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"BAMTag",
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"CIGAR",
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"CIGAROpKind",
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"CIGAROperation",
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"ReferenceSequence",
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]
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from enum import IntFlag
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def _finalize_other(self, draft: FeatureDraft, result: Features) -> Feature:
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parent_id = self._extract_parent_id(draft)
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parent = result.by_id
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parent = result.by_id.get(parent_id) if parent_id is not None else None
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return Feature(
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sequence_id=draft.sequence_id,
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Metadata-Version: 2.
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Metadata-Version: 2.4
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Name: biofiles
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Version: 0.0.
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Version: 0.0.12
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Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
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Author-email: Tigran Saluev <tigran@saluev.com>
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Maintainer-email: Tigran Saluev <tigran@saluev.com>
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@@ -36,6 +36,7 @@ Classifier: Programming Language :: Python :: 3.12
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Requires-Python: >=3.10
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Dynamic: license-file
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# biofiles
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