biocypher 0.9.5__tar.gz → 0.9.6__tar.gz

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  1. {biocypher-0.9.5 → biocypher-0.9.6}/PKG-INFO +1 -1
  2. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_metadata.py +1 -1
  3. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/graph/_neo4j.py +1 -3
  4. {biocypher-0.9.5 → biocypher-0.9.6}/pyproject.toml +2 -2
  5. {biocypher-0.9.5 → biocypher-0.9.6}/LICENSE +0 -0
  6. {biocypher-0.9.5 → biocypher-0.9.6}/README.md +0 -0
  7. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/__init__.py +0 -0
  8. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_config/__init__.py +0 -0
  9. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_config/biocypher_config.yaml +0 -0
  10. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_config/test_config.yaml +0 -0
  11. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_config/test_schema_config.yaml +0 -0
  12. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_config/test_schema_config_disconnected.yaml +0 -0
  13. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_config/test_schema_config_extended.yaml +0 -0
  14. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_core.py +0 -0
  15. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_create.py +0 -0
  16. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_deduplicate.py +0 -0
  17. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_get.py +0 -0
  18. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_logger.py +0 -0
  19. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_mapping.py +0 -0
  20. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_misc.py +0 -0
  21. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_ontology.py +0 -0
  22. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_translate.py +0 -0
  23. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/__init__.py +0 -0
  24. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/connect/__init__.py +0 -0
  25. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/connect/_get_connector.py +0 -0
  26. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/connect/_neo4j_driver.py +0 -0
  27. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/in_memory/__init__.py +0 -0
  28. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/in_memory/_get_in_memory_kg.py +0 -0
  29. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/in_memory/_in_memory_kg.py +0 -0
  30. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/in_memory/_networkx.py +0 -0
  31. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/in_memory/_pandas.py +0 -0
  32. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/__init__.py +0 -0
  33. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/_batch_writer.py +0 -0
  34. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/_get_writer.py +0 -0
  35. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/_writer.py +0 -0
  36. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/graph/__init__.py +0 -0
  37. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/graph/_arangodb.py +0 -0
  38. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/graph/_networkx.py +0 -0
  39. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/graph/_owl.py +0 -0
  40. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/graph/_rdf.py +0 -0
  41. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/relational/__init__.py +0 -0
  42. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/relational/_csv.py +0 -0
  43. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/relational/_postgresql.py +0 -0
  44. {biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/relational/_sqlite.py +0 -0
{biocypher-0.9.5 → biocypher-0.9.6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: biocypher
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- Version: 0.9.5
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+ Version: 0.9.6
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  Summary: A unifying framework for biomedical research knowledge graphs
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  Home-page: https://github.com/biocypher/biocypher
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  License: MIT
{biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_metadata.py RENAMED
@@ -10,7 +10,7 @@ import pathlib
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  import toml
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- _VERSION = "0.9.5"
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+ _VERSION = "0.9.6"
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  def get_metadata():
{biocypher-0.9.5 → biocypher-0.9.6}/biocypher/output/write/graph/_neo4j.py RENAMED
@@ -278,9 +278,7 @@ class _Neo4jBatchWriter(_BatchWriter):
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  """
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  import_call_neo4j_v4 = self._get_import_call("import", "--database=", "--force=")
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  import_call_neo4j_v5 = self._get_import_call("database import full", "", "--overwrite-destination=")
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- neo4j_version_check = (
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- f"version=$({self._get_default_import_call_bin_prefix()}neo4j-admin --version | cut -d '.' -f 1)"
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- )
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+ neo4j_version_check = f"version=$({self.import_call_bin_prefix}neo4j-admin --version | cut -d '.' -f 1)"
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  import_script = (
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  f"#!/bin/bash\n{neo4j_version_check}\nif [[ $version -ge 5 ]]; "
{biocypher-0.9.5 → biocypher-0.9.6}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "biocypher"
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- version = "0.9.5"
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+ version = "0.9.6"
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  description = "A unifying framework for biomedical research knowledge graphs"
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  authors = [
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  "Sebastian Lobentanzer <sebastian.lobentanzer@gmail.com>",
@@ -59,7 +59,7 @@ hypothesis = "^6.50.1"
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  ipython = "^8.7.0"
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  ipykernel = "^6.23.1"
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  coverage-badge = "^1.1.0"
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- nbsphinx = "^0.9.5"
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+ nbsphinx = "^0.9.6"
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  ruff = "^0.2.0"
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  mike = "^2.1.3"
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{biocypher-0.9.5 → biocypher-0.9.6}/LICENSE RENAMED
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{biocypher-0.9.5 → biocypher-0.9.6}/README.md RENAMED
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{biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_core.py RENAMED
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{biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_get.py RENAMED
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{biocypher-0.9.5 → biocypher-0.9.6}/biocypher/_misc.py RENAMED
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