biocypher 0.10.0__tar.gz → 0.10.1__tar.gz

{biocypher-0.10.0 → biocypher-0.10.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: biocypher
-Version: 0.10.0
+Version: 0.10.1
 Summary: A unifying framework for biomedical research knowledge graphs
 Home-page: https://github.com/biocypher/biocypher
 License: MIT
@@ -81,7 +81,7 @@ Board](https://github.com/orgs/biocypher/projects/3/views/2).
 
 Install the package from PyPI using `pip install biocypher`. More comprehensive
 installation and configuration instructions can be found
-[here](https://biocypher.org/installation.html).
+[here](https://biocypher.org/BioCypher/installation/).
 
 Exemplary usage of BioCypher to build a graph database is shown in our tutorial
 and the various pipelines we have created. You can find these on the [Components

{biocypher-0.10.0 → biocypher-0.10.1}/README.md

@@ -44,7 +44,7 @@ Board](https://github.com/orgs/biocypher/projects/3/views/2).
 
 Install the package from PyPI using `pip install biocypher`. More comprehensive
 installation and configuration instructions can be found
-[here](https://biocypher.org/installation.html).
+[here](https://biocypher.org/BioCypher/installation/).
 
 Exemplary usage of BioCypher to build a graph database is shown in our tutorial
 and the various pipelines we have created. You can find these on the [Components

{biocypher-0.10.0 → biocypher-0.10.1}/biocypher/_metadata.py

@@ -10,7 +10,7 @@ import pathlib
 
 import toml
 
-_VERSION = "0.10.0"
+_VERSION = "0.10.1"
 
 
 def get_metadata():

{biocypher-0.10.0 → biocypher-0.10.1}/biocypher/output/in_memory/_airr.py

@@ -1,10 +1,15 @@
-from typing import Any, Optional
+from __future__ import annotations
+
+from typing import TYPE_CHECKING, Any, Optional
 
 from biocypher._create import BioCypherEdge, BioCypherNode
 from biocypher._deduplicate import Deduplicator
 from biocypher._logger import logger
 from biocypher.output.in_memory._in_memory_kg import _InMemoryKG
 
+if TYPE_CHECKING:
+    from scirpy.io import AirrCell
+
 try:
     from scirpy.io import AirrCell
 
@@ -354,6 +359,7 @@ class AirrKG(_InMemoryKG):
             list: List of generated AIRR cells
 
         """
+        self._check_dependencies()
         if not entities:
             msg = "No entities provided for conversion."
             raise ValueError(msg)
@@ -419,6 +425,7 @@ class AirrKG(_InMemoryKG):
         paired: bool,
         receptor_epitope_mapping: dict[str, set] | None = None,
     ) -> list[AirrCell]:
+        self._check_dependencies()
         cell = AirrCell(cell_id=cell_id)
 
         # Process both chains
@@ -464,6 +471,7 @@ class AirrKG(_InMemoryKG):
             List of cells with metadata added
 
         """
+        self._check_dependencies()
         cells = []
         if not metadata_nodes:
             cell["data_source"] = "BioCypher"

{biocypher-0.10.0 → biocypher-0.10.1}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "biocypher"
-version = "0.10.0"
+version = "0.10.1"
 description = "A unifying framework for biomedical research knowledge graphs"
 authors = [
     "Sebastian Lobentanzer <sebastian.lobentanzer@gmail.com>",