biobb-io 4.1.1__tar.gz → 4.2.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (30) hide show
  1. {biobb_io-4.1.1 → biobb_io-4.2.0}/PKG-INFO +9 -9
  2. {biobb_io-4.1.1 → biobb_io-4.2.0}/README.md +7 -7
  3. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/__init__.py +1 -1
  4. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io.egg-info/PKG-INFO +9 -9
  5. biobb_io-4.2.0/biobb_io.egg-info/requires.txt +1 -0
  6. {biobb_io-4.1.1 → biobb_io-4.2.0}/setup.py +2 -2
  7. biobb_io-4.1.1/biobb_io.egg-info/requires.txt +0 -1
  8. {biobb_io-4.1.1 → biobb_io-4.2.0}/LICENSE +0 -0
  9. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/__init__.py +0 -0
  10. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/alphafold.py +0 -0
  11. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/api_binding_site.py +0 -0
  12. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/canonical_fasta.py +0 -0
  13. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/common.py +0 -0
  14. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/drugbank.py +0 -0
  15. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/ideal_sdf.py +0 -0
  16. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/ligand.py +0 -0
  17. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/memprotmd_sim.py +0 -0
  18. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/memprotmd_sim_list.py +0 -0
  19. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/memprotmd_sim_search.py +0 -0
  20. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/mmcif.py +0 -0
  21. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/pdb.py +0 -0
  22. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/pdb_cluster_zip.py +0 -0
  23. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/pdb_variants.py +0 -0
  24. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/structure_info.py +0 -0
  25. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/test/__init__.py +0 -0
  26. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io.egg-info/SOURCES.txt +0 -0
  27. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io.egg-info/dependency_links.txt +0 -0
  28. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io.egg-info/entry_points.txt +0 -0
  29. {biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io.egg-info/top_level.txt +0 -0
  30. {biobb_io-4.1.1 → biobb_io-4.2.0}/setup.cfg +0 -0
{biobb_io-4.1.1 → biobb_io-4.2.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: biobb_io
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- Version: 4.1.1
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+ Version: 4.2.0
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  Summary: Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
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  Home-page: https://github.com/bioexcel/biobb_io
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  Author: Biobb developers
@@ -18,14 +18,14 @@ Classifier: Operating System :: POSIX
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  Requires-Python: >=3.8
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: biobb_common==4.1.0
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+ Requires-Dist: biobb_common==4.2.0
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  [![](https://img.shields.io/github/v/tag/bioexcel/biobb_io?label=Version)](https://GitHub.com/bioexcel/biobb_io/tags/)
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  [![](https://img.shields.io/pypi/v/biobb-io.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-io/)
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  [![](https://img.shields.io/conda/vn/bioconda/biobb_io?label=Conda)](https://anaconda.org/bioconda/biobb_io)
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  [![](https://img.shields.io/conda/dn/bioconda/biobb_io?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_io)
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  [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_io?tab=tags)
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- [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0)
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+ [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.2.0--pyhdfd78af_0)
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  [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_io)
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  [![](https://img.shields.io/pypi/pyversions/biobb-io.svg?label=Python%20Versions)](https://pypi.org/project/biobb-io/)
@@ -63,7 +63,7 @@ The latest documentation of this package can be found in our readthedocs site:
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  [latest API documentation](http://biobb-io.readthedocs.io/en/latest/).
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  ### Version
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- v4.1.1 2024.1
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+ v4.2.0 2024.1
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  ### Installation
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  Using PIP:
@@ -72,7 +72,7 @@ Using PIP:
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  * Installation:
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- pip install "biobb_io==4.1.1"
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+ pip install "biobb_io==4.2.0"
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  * Usage: [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html)
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@@ -80,7 +80,7 @@ Using ANACONDA:
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  * Installation:
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- conda install -c bioconda "biobb_io==4.1.1"
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+ conda install -c bioconda "biobb_io==4.2.0"
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  * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html)
@@ -89,12 +89,12 @@ Using DOCKER:
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  * Installation:
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- docker pull quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0
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+ docker pull quay.io/biocontainers/biobb_io:4.2.0--pyhdfd78af_0
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  * Usage:
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- docker run quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0 <command>
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+ docker run quay.io/biocontainers/biobb_io:4.2.0--pyhdfd78af_0 <command>
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  The command list and specification can be found at the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html).
@@ -106,7 +106,7 @@ Using SINGULARITY:
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  * Installation:
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- singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0
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+ singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.2.0--pyhdfd78af_0
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  * Usage:
{biobb_io-4.1.1 → biobb_io-4.2.0}/README.md RENAMED
@@ -3,7 +3,7 @@
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  [![](https://img.shields.io/conda/vn/bioconda/biobb_io?label=Conda)](https://anaconda.org/bioconda/biobb_io)
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  [![](https://img.shields.io/conda/dn/bioconda/biobb_io?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_io)
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  [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_io?tab=tags)
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- [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0)
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+ [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.2.0--pyhdfd78af_0)
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  [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_io)
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  [![](https://img.shields.io/pypi/pyversions/biobb-io.svg?label=Python%20Versions)](https://pypi.org/project/biobb-io/)
@@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site:
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  [latest API documentation](http://biobb-io.readthedocs.io/en/latest/).
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  ### Version
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- v4.1.1 2024.1
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+ v4.2.0 2024.1
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46
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  ### Installation
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  Using PIP:
@@ -50,7 +50,7 @@ Using PIP:
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  * Installation:
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53
- pip install "biobb_io==4.1.1"
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+ pip install "biobb_io==4.2.0"
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  * Usage: [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html)
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@@ -58,7 +58,7 @@ Using ANACONDA:
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  * Installation:
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- conda install -c bioconda "biobb_io==4.1.1"
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+ conda install -c bioconda "biobb_io==4.2.0"
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  * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html)
@@ -67,12 +67,12 @@ Using DOCKER:
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  * Installation:
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- docker pull quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0
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+ docker pull quay.io/biocontainers/biobb_io:4.2.0--pyhdfd78af_0
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  * Usage:
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- docker run quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0 <command>
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+ docker run quay.io/biocontainers/biobb_io:4.2.0--pyhdfd78af_0 <command>
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  The command list and specification can be found at the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html).
@@ -84,7 +84,7 @@ Using SINGULARITY:
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  * Installation:
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- singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0
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+ singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.2.0--pyhdfd78af_0
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  * Usage:
{biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/__init__.py RENAMED
@@ -1,3 +1,3 @@
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  name = "biobb_io"
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  __all__ = ["api"]
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- __version__ = "4.1.1"
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+ __version__ = "4.2.0"
{biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: biobb-io
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- Version: 4.1.1
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+ Version: 4.2.0
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  Summary: Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
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  Home-page: https://github.com/bioexcel/biobb_io
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  Author: Biobb developers
@@ -18,14 +18,14 @@ Classifier: Operating System :: POSIX
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  Requires-Python: >=3.8
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: biobb_common==4.1.0
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+ Requires-Dist: biobb_common==4.2.0
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  [![](https://img.shields.io/github/v/tag/bioexcel/biobb_io?label=Version)](https://GitHub.com/bioexcel/biobb_io/tags/)
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  [![](https://img.shields.io/pypi/v/biobb-io.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-io/)
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  [![](https://img.shields.io/conda/vn/bioconda/biobb_io?label=Conda)](https://anaconda.org/bioconda/biobb_io)
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  [![](https://img.shields.io/conda/dn/bioconda/biobb_io?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_io)
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  [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_io?tab=tags)
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- [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0)
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+ [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.2.0--pyhdfd78af_0)
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  [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_io)
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  [![](https://img.shields.io/pypi/pyversions/biobb-io.svg?label=Python%20Versions)](https://pypi.org/project/biobb-io/)
@@ -63,7 +63,7 @@ The latest documentation of this package can be found in our readthedocs site:
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  [latest API documentation](http://biobb-io.readthedocs.io/en/latest/).
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  ### Version
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- v4.1.1 2024.1
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+ v4.2.0 2024.1
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  ### Installation
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  Using PIP:
@@ -72,7 +72,7 @@ Using PIP:
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  * Installation:
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- pip install "biobb_io==4.1.1"
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+ pip install "biobb_io==4.2.0"
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  * Usage: [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html)
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@@ -80,7 +80,7 @@ Using ANACONDA:
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  * Installation:
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- conda install -c bioconda "biobb_io==4.1.1"
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+ conda install -c bioconda "biobb_io==4.2.0"
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85
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86
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  * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html)
@@ -89,12 +89,12 @@ Using DOCKER:
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  * Installation:
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- docker pull quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0
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+ docker pull quay.io/biocontainers/biobb_io:4.2.0--pyhdfd78af_0
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  * Usage:
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- docker run quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0 <command>
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+ docker run quay.io/biocontainers/biobb_io:4.2.0--pyhdfd78af_0 <command>
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  The command list and specification can be found at the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html).
@@ -106,7 +106,7 @@ Using SINGULARITY:
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  * Installation:
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- singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0
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+ singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.2.0--pyhdfd78af_0
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  * Usage:
biobb_io-4.2.0/biobb_io.egg-info/requires.txt ADDED
@@ -0,0 +1 @@
1
+ biobb_common==4.2.0
{biobb_io-4.1.1 → biobb_io-4.2.0}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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  setuptools.setup(
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  name="biobb_io",
8
- version="4.1.1",
8
+ version="4.2.0",
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  author="Biobb developers",
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  author_email="pau.andrio@bsc.es",
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  description="Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.",
@@ -18,7 +18,7 @@ setuptools.setup(
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  "Bioexcel": "https://bioexcel.eu/"
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  },
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  packages=setuptools.find_packages(exclude=['docs', 'test']),
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- install_requires=['biobb_common==4.1.0'],
21
+ install_requires=['biobb_common==4.2.0'],
22
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  python_requires='>=3.8',
23
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  entry_points={
24
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  "console_scripts": [
biobb_io-4.1.1/biobb_io.egg-info/requires.txt DELETED
@@ -1 +0,0 @@
1
- biobb_common==4.1.0
{biobb_io-4.1.1 → biobb_io-4.2.0}/LICENSE RENAMED
File without changes
{biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/mmcif.py RENAMED
File without changes
{biobb_io-4.1.1 → biobb_io-4.2.0}/biobb_io/api/pdb.py RENAMED
File without changes
{biobb_io-4.1.1 → biobb_io-4.2.0}/setup.cfg RENAMED
File without changes