biobb-io 4.1.0__tar.gz → 4.1.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (29) hide show
  1. {biobb_io-4.1.0 → biobb_io-4.1.1}/PKG-INFO +20 -12
  2. {biobb_io-4.1.0 → biobb_io-4.1.1}/README.md +17 -10
  3. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/__init__.py +1 -1
  4. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/common.py +3 -3
  5. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io.egg-info/PKG-INFO +20 -12
  6. {biobb_io-4.1.0 → biobb_io-4.1.1}/setup.py +2 -2
  7. {biobb_io-4.1.0 → biobb_io-4.1.1}/LICENSE +0 -0
  8. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/__init__.py +0 -0
  9. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/alphafold.py +0 -0
  10. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/api_binding_site.py +0 -0
  11. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/canonical_fasta.py +0 -0
  12. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/drugbank.py +0 -0
  13. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/ideal_sdf.py +0 -0
  14. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/ligand.py +0 -0
  15. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/memprotmd_sim.py +0 -0
  16. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/memprotmd_sim_list.py +0 -0
  17. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/memprotmd_sim_search.py +0 -0
  18. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/mmcif.py +0 -0
  19. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/pdb.py +0 -0
  20. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/pdb_cluster_zip.py +0 -0
  21. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/pdb_variants.py +0 -0
  22. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/structure_info.py +0 -0
  23. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/test/__init__.py +0 -0
  24. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io.egg-info/SOURCES.txt +0 -0
  25. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io.egg-info/dependency_links.txt +0 -0
  26. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io.egg-info/entry_points.txt +0 -0
  27. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io.egg-info/requires.txt +0 -0
  28. {biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io.egg-info/top_level.txt +0 -0
  29. {biobb_io-4.1.0 → biobb_io-4.1.1}/setup.cfg +0 -0
{biobb_io-4.1.0 → biobb_io-4.1.1}/PKG-INFO RENAMED
@@ -1,11 +1,11 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: biobb_io
3
- Version: 4.1.0
3
+ Version: 4.1.1
4
4
  Summary: Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
5
5
  Home-page: https://github.com/bioexcel/biobb_io
6
6
  Author: Biobb developers
7
7
  Author-email: pau.andrio@bsc.es
8
- Project-URL: Documentation, http://biobb_io.readthedocs.io/en/latest/
8
+ Project-URL: Documentation, http://biobb-io.readthedocs.io/en/latest/
9
9
  Project-URL: Bioexcel, https://bioexcel.eu/
10
10
  Keywords: Bioinformatics Workflows BioExcel Compatibility
11
11
  Classifier: Development Status :: 3 - Alpha
@@ -18,13 +18,14 @@ Classifier: Operating System :: POSIX
18
18
  Requires-Python: >=3.8
19
19
  Description-Content-Type: text/markdown
20
20
  License-File: LICENSE
21
+ Requires-Dist: biobb_common==4.1.0
21
22
 
22
23
  [![](https://img.shields.io/github/v/tag/bioexcel/biobb_io?label=Version)](https://GitHub.com/bioexcel/biobb_io/tags/)
23
24
  [![](https://img.shields.io/pypi/v/biobb-io.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-io/)
24
25
  [![](https://img.shields.io/conda/vn/bioconda/biobb_io?label=Conda)](https://anaconda.org/bioconda/biobb_io)
25
26
  [![](https://img.shields.io/conda/dn/bioconda/biobb_io?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_io)
26
27
  [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_io?tab=tags)
27
- [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.0--pyhdfd78af_0)
28
+ [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0)
28
29
 
29
30
  [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_io)
30
31
  [![](https://img.shields.io/pypi/pyversions/biobb-io.svg?label=Python%20Versions)](https://pypi.org/project/biobb-io/)
@@ -43,6 +44,13 @@ License-File: LICENSE
43
44
  [![](https://img.shields.io/github/last-commit/bioexcel/biobb_io?label=Last%20Commit)](https://github.com/bioexcel/biobb_io/commits/master)
44
45
  [![](https://img.shields.io/github/issues/bioexcel/biobb_io.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_io/issues/)
45
46
 
47
+ [![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F-green)](https://fair-software.eu)
48
+ [![](https://www.bestpractices.dev/projects/8847/badge)](https://www.bestpractices.dev/projects/8847)
49
+
50
+ [](https://bestpractices.coreinfrastructure.org/projects/8847/badge)
51
+
52
+ [//]: # (The previous line invisible link is for compatibility with the howfairis script https://github.com/fair-software/howfairis-github-action/tree/main wich uses the old bestpractices URL)
53
+
46
54
  # biobb_io
47
55
 
48
56
  ### Introduction
@@ -52,10 +60,10 @@ Biobb (BioExcel building blocks) packages are Python building blocks that
52
60
  create new layer of compatibility and interoperability over popular
53
61
  bioinformatics tools.
54
62
  The latest documentation of this package can be found in our readthedocs site:
55
- [latest API documentation](http://biobb_io.readthedocs.io/en/latest/).
63
+ [latest API documentation](http://biobb-io.readthedocs.io/en/latest/).
56
64
 
57
65
  ### Version
58
- v4.1.0 2023.3
66
+ v4.1.1 2024.1
59
67
 
60
68
  ### Installation
61
69
  Using PIP:
@@ -64,7 +72,7 @@ Using PIP:
64
72
 
65
73
  * Installation:
66
74
 
67
- pip install "biobb_io==4.1.0"
75
+ pip install "biobb_io==4.1.1"
68
76
 
69
77
  * Usage: [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html)
70
78
 
@@ -72,7 +80,7 @@ Using ANACONDA:
72
80
  * Installation:
73
81
 
74
82
 
75
- conda install -c bioconda "biobb_io==4.1.0"
83
+ conda install -c bioconda "biobb_io==4.1.1"
76
84
 
77
85
 
78
86
  * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html)
@@ -81,12 +89,12 @@ Using DOCKER:
81
89
  * Installation:
82
90
 
83
91
 
84
- docker pull quay.io/biocontainers/biobb_io:4.1.0--pyhdfd78af_0
92
+ docker pull quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0
85
93
 
86
94
  * Usage:
87
95
 
88
96
 
89
- docker run quay.io/biocontainers/biobb_io:4.1.0--pyhdfd78af_0 <command>
97
+ docker run quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0 <command>
90
98
 
91
99
 
92
100
  The command list and specification can be found at the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html).
@@ -98,7 +106,7 @@ Using SINGULARITY:
98
106
  * Installation:
99
107
 
100
108
 
101
- singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.0--pyhdfd78af_0
109
+ singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0
102
110
 
103
111
 
104
112
  * Usage:
@@ -113,8 +121,8 @@ The command list and specification can be found at the [Command Line documentati
113
121
  ### Copyright & Licensing
114
122
  This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
115
123
 
116
- * (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)
117
- * (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
124
+ * (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)
125
+ * (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
118
126
 
119
127
  Licensed under the
120
128
  [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.
{biobb_io-4.1.0 → biobb_io-4.1.1}/README.md RENAMED
@@ -3,7 +3,7 @@
3
3
  [![](https://img.shields.io/conda/vn/bioconda/biobb_io?label=Conda)](https://anaconda.org/bioconda/biobb_io)
4
4
  [![](https://img.shields.io/conda/dn/bioconda/biobb_io?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_io)
5
5
  [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_io?tab=tags)
6
- [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.0--pyhdfd78af_0)
6
+ [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0)
7
7
 
8
8
  [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_io)
9
9
  [![](https://img.shields.io/pypi/pyversions/biobb-io.svg?label=Python%20Versions)](https://pypi.org/project/biobb-io/)
@@ -22,6 +22,13 @@
22
22
  [![](https://img.shields.io/github/last-commit/bioexcel/biobb_io?label=Last%20Commit)](https://github.com/bioexcel/biobb_io/commits/master)
23
23
  [![](https://img.shields.io/github/issues/bioexcel/biobb_io.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_io/issues/)
24
24
 
25
+ [![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F-green)](https://fair-software.eu)
26
+ [![](https://www.bestpractices.dev/projects/8847/badge)](https://www.bestpractices.dev/projects/8847)
27
+
28
+ [](https://bestpractices.coreinfrastructure.org/projects/8847/badge)
29
+
30
+ [//]: # (The previous line invisible link is for compatibility with the howfairis script https://github.com/fair-software/howfairis-github-action/tree/main wich uses the old bestpractices URL)
31
+
25
32
  # biobb_io
26
33
 
27
34
  ### Introduction
@@ -31,10 +38,10 @@ Biobb (BioExcel building blocks) packages are Python building blocks that
31
38
  create new layer of compatibility and interoperability over popular
32
39
  bioinformatics tools.
33
40
  The latest documentation of this package can be found in our readthedocs site:
34
- [latest API documentation](http://biobb_io.readthedocs.io/en/latest/).
41
+ [latest API documentation](http://biobb-io.readthedocs.io/en/latest/).
35
42
 
36
43
  ### Version
37
- v4.1.0 2023.3
44
+ v4.1.1 2024.1
38
45
 
39
46
  ### Installation
40
47
  Using PIP:
@@ -43,7 +50,7 @@ Using PIP:
43
50
 
44
51
  * Installation:
45
52
 
46
- pip install "biobb_io==4.1.0"
53
+ pip install "biobb_io==4.1.1"
47
54
 
48
55
  * Usage: [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html)
49
56
 
@@ -51,7 +58,7 @@ Using ANACONDA:
51
58
  * Installation:
52
59
 
53
60
 
54
- conda install -c bioconda "biobb_io==4.1.0"
61
+ conda install -c bioconda "biobb_io==4.1.1"
55
62
 
56
63
 
57
64
  * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html)
@@ -60,12 +67,12 @@ Using DOCKER:
60
67
  * Installation:
61
68
 
62
69
 
63
- docker pull quay.io/biocontainers/biobb_io:4.1.0--pyhdfd78af_0
70
+ docker pull quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0
64
71
 
65
72
  * Usage:
66
73
 
67
74
 
68
- docker run quay.io/biocontainers/biobb_io:4.1.0--pyhdfd78af_0 <command>
75
+ docker run quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0 <command>
69
76
 
70
77
 
71
78
  The command list and specification can be found at the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html).
@@ -77,7 +84,7 @@ Using SINGULARITY:
77
84
  * Installation:
78
85
 
79
86
 
80
- singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.0--pyhdfd78af_0
87
+ singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0
81
88
 
82
89
 
83
90
  * Usage:
@@ -92,8 +99,8 @@ The command list and specification can be found at the [Command Line documentati
92
99
  ### Copyright & Licensing
93
100
  This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
94
101
 
95
- * (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)
96
- * (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
102
+ * (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)
103
+ * (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
97
104
 
98
105
  Licensed under the
99
106
  [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.
{biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/__init__.py RENAMED
@@ -1,3 +1,3 @@
1
1
  name = "biobb_io"
2
2
  __all__ = ["api"]
3
- __version__ = "4.1.0"
3
+ __version__ = "4.1.1"
{biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/common.py RENAMED
@@ -100,7 +100,7 @@ def download_ligand(ligand_code, api_id, out_log=None, global_log=None):
100
100
  url = "http://mmb.irbbarcelona.org/api/pdbMonomer/" + ligand_code.lower()
101
101
  text = requests.get(url, verify=False).content.decode('utf-8')
102
102
  elif api_id == 'pdbe':
103
- url = "ftp://ftp.ebi.ac.uk/pub/databases/msd/pdbechem_v2/{0}/{1}/{1}_ideal.pdb".format(ligand_code.upper()[0], ligand_code.upper())
103
+ url = "https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/" + ligand_code.upper() + "_ideal.pdb"
104
104
  text = urllib.request.urlopen(url).read().decode('utf-8')
105
105
 
106
106
  fu.log("Downloading %s from: %s" % (ligand_code, url), out_log, global_log)
@@ -166,10 +166,10 @@ def download_ideal_sdf(ligand_code, api_id, out_log=None, global_log=None):
166
166
  """
167
167
 
168
168
  if api_id == 'pdb':
169
- url = "https://files.rcsb.org/ligands/view/" + ligand_code.upper() + "_ideal.sdf"
169
+ url = "https://files.rcsb.org/ligands/download/" + ligand_code.upper() + "_ideal.sdf"
170
170
  text = requests.get(url, verify=False).content.decode('utf-8')
171
171
  elif api_id == 'pdbe':
172
- url = "ftp://ftp.ebi.ac.uk/pub/databases/msd/pdbechem_v2/{0}/{1}/{1}_ideal.sdf".format(ligand_code.upper()[0], ligand_code.upper())
172
+ url = "https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/" + ligand_code.upper() + "_ideal.sdf"
173
173
  text = urllib.request.urlopen(url).read().decode('utf-8')
174
174
 
175
175
  fu.log("Downloading %s from: %s" % (ligand_code, url), out_log, global_log)
{biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io.egg-info/PKG-INFO RENAMED
@@ -1,11 +1,11 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: biobb-io
3
- Version: 4.1.0
3
+ Version: 4.1.1
4
4
  Summary: Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
5
5
  Home-page: https://github.com/bioexcel/biobb_io
6
6
  Author: Biobb developers
7
7
  Author-email: pau.andrio@bsc.es
8
- Project-URL: Documentation, http://biobb_io.readthedocs.io/en/latest/
8
+ Project-URL: Documentation, http://biobb-io.readthedocs.io/en/latest/
9
9
  Project-URL: Bioexcel, https://bioexcel.eu/
10
10
  Keywords: Bioinformatics Workflows BioExcel Compatibility
11
11
  Classifier: Development Status :: 3 - Alpha
@@ -18,13 +18,14 @@ Classifier: Operating System :: POSIX
18
18
  Requires-Python: >=3.8
19
19
  Description-Content-Type: text/markdown
20
20
  License-File: LICENSE
21
+ Requires-Dist: biobb_common==4.1.0
21
22
 
22
23
  [![](https://img.shields.io/github/v/tag/bioexcel/biobb_io?label=Version)](https://GitHub.com/bioexcel/biobb_io/tags/)
23
24
  [![](https://img.shields.io/pypi/v/biobb-io.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-io/)
24
25
  [![](https://img.shields.io/conda/vn/bioconda/biobb_io?label=Conda)](https://anaconda.org/bioconda/biobb_io)
25
26
  [![](https://img.shields.io/conda/dn/bioconda/biobb_io?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_io)
26
27
  [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_io?tab=tags)
27
- [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.0--pyhdfd78af_0)
28
+ [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0)
28
29
 
29
30
  [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_io)
30
31
  [![](https://img.shields.io/pypi/pyversions/biobb-io.svg?label=Python%20Versions)](https://pypi.org/project/biobb-io/)
@@ -43,6 +44,13 @@ License-File: LICENSE
43
44
  [![](https://img.shields.io/github/last-commit/bioexcel/biobb_io?label=Last%20Commit)](https://github.com/bioexcel/biobb_io/commits/master)
44
45
  [![](https://img.shields.io/github/issues/bioexcel/biobb_io.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_io/issues/)
45
46
 
47
+ [![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F-green)](https://fair-software.eu)
48
+ [![](https://www.bestpractices.dev/projects/8847/badge)](https://www.bestpractices.dev/projects/8847)
49
+
50
+ [](https://bestpractices.coreinfrastructure.org/projects/8847/badge)
51
+
52
+ [//]: # (The previous line invisible link is for compatibility with the howfairis script https://github.com/fair-software/howfairis-github-action/tree/main wich uses the old bestpractices URL)
53
+
46
54
  # biobb_io
47
55
 
48
56
  ### Introduction
@@ -52,10 +60,10 @@ Biobb (BioExcel building blocks) packages are Python building blocks that
52
60
  create new layer of compatibility and interoperability over popular
53
61
  bioinformatics tools.
54
62
  The latest documentation of this package can be found in our readthedocs site:
55
- [latest API documentation](http://biobb_io.readthedocs.io/en/latest/).
63
+ [latest API documentation](http://biobb-io.readthedocs.io/en/latest/).
56
64
 
57
65
  ### Version
58
- v4.1.0 2023.3
66
+ v4.1.1 2024.1
59
67
 
60
68
  ### Installation
61
69
  Using PIP:
@@ -64,7 +72,7 @@ Using PIP:
64
72
 
65
73
  * Installation:
66
74
 
67
- pip install "biobb_io==4.1.0"
75
+ pip install "biobb_io==4.1.1"
68
76
 
69
77
  * Usage: [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html)
70
78
 
@@ -72,7 +80,7 @@ Using ANACONDA:
72
80
  * Installation:
73
81
 
74
82
 
75
- conda install -c bioconda "biobb_io==4.1.0"
83
+ conda install -c bioconda "biobb_io==4.1.1"
76
84
 
77
85
 
78
86
  * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-io.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html)
@@ -81,12 +89,12 @@ Using DOCKER:
81
89
  * Installation:
82
90
 
83
91
 
84
- docker pull quay.io/biocontainers/biobb_io:4.1.0--pyhdfd78af_0
92
+ docker pull quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0
85
93
 
86
94
  * Usage:
87
95
 
88
96
 
89
- docker run quay.io/biocontainers/biobb_io:4.1.0--pyhdfd78af_0 <command>
97
+ docker run quay.io/biocontainers/biobb_io:4.1.1--pyhdfd78af_0 <command>
90
98
 
91
99
 
92
100
  The command list and specification can be found at the [Command Line documentation](https://biobb-io.readthedocs.io/en/latest/command_line.html).
@@ -98,7 +106,7 @@ Using SINGULARITY:
98
106
  * Installation:
99
107
 
100
108
 
101
- singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.0--pyhdfd78af_0
109
+ singularity pull --name biobb_io.sif https://depot.galaxyproject.org/singularity/biobb_io:4.1.1--pyhdfd78af_0
102
110
 
103
111
 
104
112
  * Usage:
@@ -113,8 +121,8 @@ The command list and specification can be found at the [Command Line documentati
113
121
  ### Copyright & Licensing
114
122
  This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
115
123
 
116
- * (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)
117
- * (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
124
+ * (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)
125
+ * (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
118
126
 
119
127
  Licensed under the
120
128
  [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.
{biobb_io-4.1.0 → biobb_io-4.1.1}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
5
5
 
6
6
  setuptools.setup(
7
7
  name="biobb_io",
8
- version="4.1.0",
8
+ version="4.1.1",
9
9
  author="Biobb developers",
10
10
  author_email="pau.andrio@bsc.es",
11
11
  description="Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.",
@@ -14,7 +14,7 @@ setuptools.setup(
14
14
  keywords="Bioinformatics Workflows BioExcel Compatibility",
15
15
  url="https://github.com/bioexcel/biobb_io",
16
16
  project_urls={
17
- "Documentation": "http://biobb_io.readthedocs.io/en/latest/",
17
+ "Documentation": "http://biobb-io.readthedocs.io/en/latest/",
18
18
  "Bioexcel": "https://bioexcel.eu/"
19
19
  },
20
20
  packages=setuptools.find_packages(exclude=['docs', 'test']),
{biobb_io-4.1.0 → biobb_io-4.1.1}/LICENSE RENAMED
File without changes
{biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/mmcif.py RENAMED
File without changes
{biobb_io-4.1.0 → biobb_io-4.1.1}/biobb_io/api/pdb.py RENAMED
File without changes
{biobb_io-4.1.0 → biobb_io-4.1.1}/setup.cfg RENAMED
File without changes