PyPI - bio2zarr - Versions diffs - 0.1.0__tar.gz → 0.1.1__tar.gz - Mend

bio2zarr 0.1.0tar.gz → 0.1.1tar.gz

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Files changed (54) hide show

{bio2zarr-0.1.0 → bio2zarr-0.1.1}/CHANGELOG.md RENAMED Viewed

@@ -1,3 +1,10 @@
+# 0.1.1 2024-06-19
+Maintenance release:
+- Pin numpy to < 2
+- Pin Zarr to < 3
 # 0.1.0 2024-06-10
 - Initial production-ready version.

{bio2zarr-0.1.0 → bio2zarr-0.1.1}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bio2zarr
-Version: 0.1.0
+Version: 0.1.1
 Summary: Convert bioinformatics data to Zarr
 Author-email: sgkit Developers <project@sgkit.dev>
 License:                                  Apache License
@@ -223,8 +223,8 @@ Classifier: Topic :: Scientific/Engineering
 Requires-Python: >=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: numpy
-Requires-Dist: zarr>=2.17
+Requires-Dist: numpy<2
+Requires-Dist: zarr<3,>=2.17
 Requires-Dist: click
 Requires-Dist: tabulate
 Requires-Dist: tqdm

{bio2zarr-0.1.0 → bio2zarr-0.1.1}/bio2zarr/_version.py RENAMED Viewed

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
-__version__ = version = '0.1.0'
-__version_tuple__ = version_tuple = (0, 1, 0)
+__version__ = version = '0.1.1'
+__version_tuple__ = version_tuple = (0, 1, 1)

{bio2zarr-0.1.0 → bio2zarr-0.1.1}/bio2zarr.egg-info/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bio2zarr
-Version: 0.1.0
+Version: 0.1.1
 Summary: Convert bioinformatics data to Zarr
 Author-email: sgkit Developers <project@sgkit.dev>
 License:                                  Apache License
@@ -223,8 +223,8 @@ Classifier: Topic :: Scientific/Engineering
 Requires-Python: >=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: numpy
-Requires-Dist: zarr>=2.17
+Requires-Dist: numpy<2
+Requires-Dist: zarr<3,>=2.17
 Requires-Dist: click
 Requires-Dist: tabulate
 Requires-Dist: tqdm

{bio2zarr-0.1.0 → bio2zarr-0.1.1}/bio2zarr.egg-info/requires.txt RENAMED Viewed

@@ -1,5 +1,5 @@
-numpy
-zarr>=2.17
+numpy<2
+zarr<3,>=2.17
 click
 tabulate
 tqdm

{bio2zarr-0.1.0 → bio2zarr-0.1.1}/docs/Makefile RENAMED Viewed

@@ -24,6 +24,7 @@ dist: ${CASTS}
 clean:
 	rm -fR $(BUILDDIR)
 	rm -f _static/*.cast
+	rm sample.vcf.gz*
 sample.vcf.gz:
@@ -35,12 +36,15 @@ sample.vcf.gz:
 _static/vcf2zarr_convert.cast: sample.vcf.gz
 	rm -fR sample.vcz
-	asciinema-automation cast_scripts/vcf2zarr_convert.sh $@
+	asciinema-automation -d cast_scripts/vcf2zarr_convert.sh $@
+	cat _static/vcf2zarr_convert.log
+	asciinema play _static/vcf2zarr_convert.cast
 	cp -R sample.vcz vcf2zarr
 # TODO rename this cast
 _static/vcf2zarr_explode.cast: sample.vcf.gz
 	rm -Rf sample.icf sample.vcz
-	asciinema-automation cast_scripts/vcf2zarr_explode.sh $@
+	asciinema-automation -d cast_scripts/vcf2zarr_explode.sh $@
+	cat _static/vcf2zarr_explode.log
+	asciinema play _static/vcf2zarr_explode.cast
 	cp -R sample.icf sample.vcz vcf2zarr

{bio2zarr-0.1.0 → bio2zarr-0.1.1}/pyproject.toml RENAMED Viewed

@@ -11,8 +11,8 @@ authors = [
   {name = "sgkit Developers", email = "project@sgkit.dev"},
 ]
 dependencies = [
-  "numpy",
-  "zarr >= 2.17",
+  "numpy < 2",
+  "zarr >= 2.17,< 3",
   "click",
   "tabulate",
   "tqdm",
@@ -60,7 +60,7 @@ dev = [
 ]
 [tool.setuptools]
-packages = ["bio2zarr"]
+packages = ["bio2zarr", "bio2zarr.vcf2zarr"]
 [tool.setuptools_scm]
 version_file = "bio2zarr/_version.py"