bio-grumpy 0.2.7__tar.gz → 1.0.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/.gitignore +5 -1
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/Cargo.lock +165 -35
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/Cargo.toml +2 -1
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/PKG-INFO +1 -1
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/src/common.rs +6 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/src/genome.rs +114 -2
- bio_grumpy-1.0.1/src/main.rs +146 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/src/vcf.rs +101 -0
- bio_grumpy-1.0.1/test/complex.vcf +14 -0
- bio_grumpy-0.2.7/src/main.rs +0 -122
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/.github/workflows/release.yaml +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/.github/workflows/test.yaml +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/LICENSE +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/README-python.md +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/README.md +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/pyproject.toml +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/reference/MN908947.3.gb +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/reference/NC_000962.3.gbk +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/reference/TEST-DNA.gbk +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/src/difference.rs +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/src/gene.rs +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/src/lib.rs +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/TEST-DNA-4-minor.vcf +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/TEST-DNA-4.vcf +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/TEST-DNA-misc-indel.vcf +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/TEST-DNA.vcf +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/dummy.vcf +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/minor-populations-revcomp-AD.vcf +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/minor-populations-revcomp.vcf +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/revcomp-del-first-pos.vcf +0 -0
- {bio_grumpy-0.2.7 → bio_grumpy-1.0.1}/test/tb-snp-after-del.vcf +0 -0
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|
/// True if the filter column passes
|
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#[pyo3(get, set)]
|
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|
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/// Whether this VCF row is complex
|
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|
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/// Complex VCF rows are edge cases where a row has a large (>1,000) bases for the ref as well as >1 alt
|
|
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|
+
/// This is used to flag when mutations' evidence isn't worth fetching due to size.
|
|
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|
+
pub is_complex: bool,
|
|
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|
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|
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|
#[pyclass(eq)]
|