binsparse 0.1.0__tar.gz

binsparse-0.1.0/.github/workflows/ci.yml

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+name: CI
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+concurrency:
+  group: ci-${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test:
+    name: Test (${{ matrix.os }}, Python ${{ matrix.python-version }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.11", "3.14"]
+
+    steps:
+      - uses: actions/checkout@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: pip
+      - name: Install package and test dependencies
+        run: python -m pip install --upgrade pip pytest pytest-cov pytest-xdist -e .
+      - name: Run tests
+        run: python -m pytest -n auto --cov=binsparse --cov-report=term-missing
+
+  type-check:
+    name: Type check
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: "3.14"
+          cache: pip
+      - name: Install package and mypy
+        run: python -m pip install --upgrade pip mypy -e .
+      - name: Run mypy
+        run: python -m mypy
+
+  conversions:
+    name: ${{ matrix.name }} conversion
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - name: SciPy
+            extra: scipy
+            test: src/tests/test_conversion_scipy.py
+          - name: PyData/Sparse
+            extra: sparse
+            test: src/tests/test_conversion_sparse.py
+          - name: PyTorch
+            extra: torch
+            test: src/tests/test_conversion_torch.py
+
+    steps:
+      - uses: actions/checkout@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: "3.13"
+          cache: pip
+      - name: Install ${{ matrix.name }} adapter
+        run: python -m pip install --upgrade pip pytest pytest-cov -e ".[${{ matrix.extra }}]"
+      - name: Test ${{ matrix.name }} adapter
+        run: python -m pytest -q ${{ matrix.test }}
+
+  package:
+    name: Build package
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: "3.14"
+          cache: pip
+      - name: Install build tools
+        run: python -m pip install --upgrade pip build twine
+      - name: Build distributions
+        run: python -m build
+      - name: Validate distributions
+        run: python -m twine check dist/*
+      - uses: actions/upload-artifact@v7
+        with:
+          name: distributions
+          path: dist/
+          if-no-files-found: error

binsparse-0.1.0/.github/workflows/publish.yml

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+name: Publish
+
+on:
+  workflow_dispatch:
+
+permissions:
+  contents: write
+  id-token: write
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v6
+      - name: Set up Python
+        uses: actions/setup-python@v6
+        with:
+          python-version: "3.x"
+      - name: Install dependencies
+        run: python -m pip install build
+      - uses: prefix-dev/setup-pixi@v0.10.0
+        with:
+          pixi-version: v0.71.3
+      - name: Get version
+        run: |
+          VERSION=$(python -c 'import tomllib; print("v" + tomllib.load(open("pyproject.toml", "rb"))["project"]["version"])')
+          echo "VERSION=$VERSION" >> "$GITHUB_ENV"
+      - name: Build PyPI package
+        run: python -m build
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_TOKEN }}
+          skip-existing: true
+      - name: Authenticate with Prefix.dev
+        run: pixi auth login --token "${{ secrets.PREFIX_API_KEY }}" https://prefix.dev
+      - name: Build and publish to Prefix.dev
+        run: pixi publish --target-channel https://prefix.dev/willow-ahrens/binsparse
+      - name: Create a release
+        uses: softprops/action-gh-release@v3
+        env:
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          name: Release ${{ env.VERSION }}
+          make_latest: true
+          tag_name: ${{ env.VERSION }}

binsparse-0.1.0/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[codz]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#   Usually these files are written by a python script from a template
+#   before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py.cover
+*.lcov
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+# Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+# uv.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+# poetry.lock
+# poetry.toml
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#   pdm recommends including project-wide configuration in pdm.toml, but excluding .pdm-python.
+#   https://pdm-project.org/en/latest/usage/project/#working-with-version-control
+# pdm.lock
+# pdm.toml
+.pdm-python
+.pdm-build/
+
+# pixi
+#   Similar to Pipfile.lock, it is generally recommended to include pixi.lock in version control.
+# pixi.lock
+#   Pixi creates a virtual environment in the .pixi directory, just like venv module creates one
+#   in the .venv directory. It is recommended not to include this directory in version control.
+.pixi/*
+!.pixi/config.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule*
+celerybeat.pid
+
+# Redis
+*.rdb
+*.aof
+*.pid
+
+# RabbitMQ
+mnesia/
+rabbitmq/
+rabbitmq-data/
+
+# ActiveMQ
+activemq-data/
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.envrc
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#   JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#   be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#   and can be added to the global gitignore or merged into this file.  For a more nuclear
+#   option (not recommended) you can uncomment the following to ignore the entire idea folder.
+# .idea/
+
+# Abstra
+#   Abstra is an AI-powered process automation framework.
+#   Ignore directories containing user credentials, local state, and settings.
+#   Learn more at https://abstra.io/docs
+.abstra/
+
+# Visual Studio Code
+#   Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore 
+#   that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
+#   and can be added to the global gitignore or merged into this file. However, if you prefer, 
+#   you could uncomment the following to ignore the entire vscode folder
+# .vscode/
+# Temporary file for partial code execution
+tempCodeRunnerFile.py
+
+# Ruff stuff:
+.ruff_cache/
+
+# PyPI configuration file
+.pypirc
+
+# Marimo
+marimo/_static/
+marimo/_lsp/
+__marimo__/
+
+# Streamlit
+.streamlit/secrets.toml

binsparse-0.1.0/PKG-INFO

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+Metadata-Version: 2.5
+Name: binsparse
+Version: 0.1.0
+Author-email: Willow Ahrens <ahrens@gatech.edu>
+Requires-Python: >=3.11
+Requires-Dist: h5py<4,>=3.16.0
+Requires-Dist: numpy<3,>=2
+Requires-Dist: semver<4,>=3
+Provides-Extra: conversions
+Requires-Dist: scipy; extra == 'conversions'
+Requires-Dist: sparse; extra == 'conversions'
+Requires-Dist: torch; extra == 'conversions'
+Provides-Extra: scipy
+Requires-Dist: scipy; extra == 'scipy'
+Provides-Extra: sparse
+Requires-Dist: sparse; extra == 'sparse'
+Provides-Extra: torch
+Requires-Dist: torch; extra == 'torch'

binsparse-0.1.0/bin/binsparse_to_binsparse

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+#!/usr/bin/env python3
+"""Round-trip a Binsparse file through the package representation."""
+
+from reference_cli.converters import binsparse_to_binsparse_main
+
+
+if __name__ == "__main__":
+    raise SystemExit(binsparse_to_binsparse_main())

binsparse-0.1.0/bin/binsparse_to_npy

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+#!/usr/bin/env python3
+"""Convert a Binsparse file to NumPy dense/pattern outputs."""
+
+from reference_cli.converters import binsparse_to_npy_main
+
+
+if __name__ == "__main__":
+    raise SystemExit(binsparse_to_npy_main())

binsparse-0.1.0/bin/npy_to_binsparse

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+#!/usr/bin/env python3
+"""Convert NumPy dense/pattern inputs to a Binsparse file."""
+
+from reference_cli.converters import npy_to_binsparse_main
+
+
+if __name__ == "__main__":
+    raise SystemExit(npy_to_binsparse_main())

binsparse-0.1.0/compliance-skips/numpy.txt

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+# NumPy has no explicit-storage pattern or fill metadata. Every generated test
+# varies one or both within a single test ID, so the suite cannot isolate a
+# supported NumPy case using its ID-substring skip mechanism.
+test_executables.py

binsparse-0.1.0/compliance-skips/reference.txt

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+# The reference executables implement every format exercised by the suite.

binsparse-0.1.0/compliance-skips/scipy.txt

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+# SciPy only represents two-dimensional CSR, CSC, and COO arrays with zero fill.
+# The generated suite varies fill values within each test ID, so unsupported cases
+# cannot be isolated more narrowly with the suite's ID-based skip mechanism.
+test_custom_0d
+test_custom_1d
+test_custom_2d
+test_custom_3d
+test_custom_nd
+test_predefined_1d
+test_predefined_2d

binsparse-0.1.0/compliance-skips/sparse.txt

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+# PyData/Sparse has no scalar COO and custom tests mix nested/non-COO levels.
+test_custom_0d
+test_custom_1d
+test_custom_2d
+test_custom_3d
+test_custom_nd
+# Dense and compressed predefined formats are not PyData/Sparse COO tensors.
+[DVEC-
+[CVEC-
+[DMAT-
+[DMATR-
+[DMATC-
+[CSR-
+[CSC-
+[DCSR-
+[DCSC-