bigraph-schema 0.0.62__tar.gz → 0.0.63__tar.gz

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  1. {bigraph-schema-0.0.62/bigraph_schema.egg-info → bigraph-schema-0.0.63}/PKG-INFO +1 -1
  2. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/edge.py +19 -0
  3. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63/bigraph_schema.egg-info}/PKG-INFO +1 -1
  4. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/pyproject.toml +6 -1
  5. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/setup.py +1 -1
  6. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/.github/workflows/notebook_to_html.yml +0 -0
  7. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/.github/workflows/pytest.yml +0 -0
  8. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/.gitignore +0 -0
  9. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/AUTHORS.md +0 -0
  10. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/CLA.md +0 -0
  11. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/CODE_OF_CONDUCT.md +0 -0
  12. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/CONTRIBUTING.md +0 -0
  13. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/LICENSE +0 -0
  14. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/README.md +0 -0
  15. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/__init__.py +0 -0
  16. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/parse.py +0 -0
  17. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/protocols.py +0 -0
  18. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/registry.py +0 -0
  19. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/tests.py +0 -0
  20. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/type_functions.py +0 -0
  21. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/type_system.py +0 -0
  22. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/type_system_adjunct.py +0 -0
  23. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/units.py +0 -0
  24. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/utilities.py +0 -0
  25. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema.egg-info/SOURCES.txt +0 -0
  26. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema.egg-info/dependency_links.txt +0 -0
  27. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema.egg-info/requires.txt +0 -0
  28. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema.egg-info/top_level.txt +0 -0
  29. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/notebooks/core.ipynb +0 -0
  30. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/notebooks/demo.ipynb +0 -0
  31. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/notebooks/images/place-link.png +0 -0
  32. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/notebooks/images/reaction-after.png +0 -0
  33. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/notebooks/images/reaction-before.png +0 -0
  34. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/notebooks/images/redex-reactum.png +0 -0
  35. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/pytest.ini +0 -0
  36. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/release.sh +0 -0
  37. {bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/setup.cfg +0 -0
{bigraph-schema-0.0.62/bigraph_schema.egg-info → bigraph-schema-0.0.63}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bigraph-schema
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- Version: 0.0.62
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+ Version: 0.0.63
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  Summary: A serializable type schema for compositional systems biology
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  Home-page: https://github.com/vivarium-collective/bigraph-schema
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  Author: Eran Agmon, Ryan Spangler
{bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/bigraph_schema/edge.py RENAMED
@@ -6,6 +6,12 @@ Edge
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  Base class for all edges in the bigraph schema.
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  """
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+ def default_wires(schema):
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+ return {
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+ key: [key]
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+ for key in schema}
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+
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+
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  class Edge:
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  config_schema = {}
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@@ -52,8 +58,21 @@ class Edge:
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  return {}
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+ def default_inputs(self):
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+ schema = self.inputs()
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+ wires = default_wires(schema)
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+ return wires
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+
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+
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+ def default_outputs(self):
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+ schema = self.outputs()
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+ wires = default_wires(schema)
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+ return wires
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+
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+
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  def interface(self):
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  """Returns the schema for this type"""
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  return {
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  'inputs': self.inputs(),
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  'outputs': self.outputs()}
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+
{bigraph-schema-0.0.62 → bigraph-schema-0.0.63/bigraph_schema.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bigraph-schema
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- Version: 0.0.62
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+ Version: 0.0.63
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  Summary: A serializable type schema for compositional systems biology
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  Home-page: https://github.com/vivarium-collective/bigraph-schema
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  Author: Eran Agmon, Ryan Spangler
{bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/pyproject.toml RENAMED
@@ -1,8 +1,13 @@
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  [project]
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  name = "bigraph-schema"
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- version = "0.0.62"
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+ version = "0.0.63"
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  description = "A serializable type schema for compositional systems biology"
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  readme = "README.md"
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+ requires-python = ">=3.7"
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+ authors = [
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+ {name = "Eran Agmon"},
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+ {name = "Ryan Spangler"}
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+ ]
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  dependencies = [
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  "fire",
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  "numpy",
{bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/setup.py RENAMED
@@ -1,7 +1,7 @@
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  from setuptools import setup, find_packages
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- VERSION = '0.0.62'
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+ VERSION = '0.0.63'
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  with open("README.md", "r") as readme:
{bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/CLA.md RENAMED
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{bigraph-schema-0.0.62 → bigraph-schema-0.0.63}/LICENSE RENAMED
File without changes