bigraph-schema 0.0.53__tar.gz → 0.0.54__tar.gz

{bigraph-schema-0.0.53/bigraph_schema.egg-info → bigraph-schema-0.0.54}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bigraph-schema
-Version: 0.0.53
+Version: 0.0.54
 Summary: A serializable type schema for compositional systems biology
 Home-page: https://github.com/vivarium-collective/bigraph-schema
 Author: Eran Agmon, Ryan Spangler

{bigraph-schema-0.0.53 → bigraph-schema-0.0.54}/bigraph_schema/type_functions.py

@@ -1632,6 +1632,18 @@ def bind_enum(schema, state, key, subschema, substate, core):
 # Each function handles a specific type of schema and ensures that updates are resolved correctly.
 # Function signature: (schema, update, core)
 
+def resolve_maybe(schema, update, core):
+    value_schema = core.find_parameter(
+        schema,
+        'value')
+
+    inner_value = core.resolve_schemas(
+        value_schema,
+        update)
+
+    schema['_value'] = inner_value
+
+
 def resolve_map(schema, update, core):
     if isinstance(update, dict):
         value_schema = update.get(
@@ -2597,13 +2609,14 @@ base_types = {
 
     'maybe': {
         '_type': 'maybe',
-        '_default': NONE_SYMBOL,
+        '_default': None,
         '_apply': apply_maybe,
         '_check': check_maybe,
         '_slice': slice_maybe,
         '_serialize': serialize_maybe,
         '_deserialize': deserialize_maybe,
         '_dataclass': dataclass_maybe,
+        '_resolve': resolve_maybe,
         '_fold': fold_maybe,
         '_type_parameters': ['value'],
         '_description': 'type to represent values that could be empty'},

{bigraph-schema-0.0.53 → bigraph-schema-0.0.54}/bigraph_schema/type_system.py

@@ -1386,13 +1386,16 @@ class TypeSystem(Registry):
                 state,
                 head)
 
-            result_schema, result_state = self.set_slice(
-                down_schema,
-                down_state,
-                tail,
-                target_schema,
-                target_state,
-                defer=defer)
+            try:
+                result_schema, result_state = self.set_slice(
+                    down_schema,
+                    down_state,
+                    tail,
+                    target_schema,
+                    target_state,
+                    defer=defer)
+            except Exception as e:
+                raise Exception(f'failed to set_slice at path {path}\n{str(e)}')
 
             return self.bind(
                 schema,

{bigraph-schema-0.0.53 → bigraph-schema-0.0.54}/bigraph_schema/utilities.py

@@ -146,6 +146,7 @@ def lookup_dtype(data_name):
 
 
 def read_datatype(data_schema):
+    print(f'reading datatype from {data_schema}')
     return lookup_dtype(
         data_schema['_type'])
 

{bigraph-schema-0.0.53 → bigraph-schema-0.0.54/bigraph_schema.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bigraph-schema
-Version: 0.0.53
+Version: 0.0.54
 Summary: A serializable type schema for compositional systems biology
 Home-page: https://github.com/vivarium-collective/bigraph-schema
 Author: Eran Agmon, Ryan Spangler

{bigraph-schema-0.0.53 → bigraph-schema-0.0.54}/setup.py

@@ -1,7 +1,7 @@
 from setuptools import setup, find_packages
 
 
-VERSION = '0.0.53'
+VERSION = '0.0.54'
 
 
 with open("README.md", "r") as readme: