bigraph-schema 0.0.17__tar.gz → 0.0.18__tar.gz

{bigraph-schema-0.0.17/bigraph_schema.egg-info → bigraph-schema-0.0.18}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bigraph-schema
-Version: 0.0.17
+Version: 0.0.18
 Summary: A serializable type schema for compositional systems biology
 Home-page: https://github.com/vivarium-collective/bigraph-schema
 Author: Eran Agmon, Ryan Spangler

{bigraph-schema-0.0.17 → bigraph-schema-0.0.18}/bigraph_schema/type_system.py

@@ -204,8 +204,9 @@ class TypeSystem:
 
                     state[key] = subupdate
         else:
-            raise Exception(f'trying to apply update\n  {update}\nto state\n  {state}\nwith '
-                            f'schema\n{schema}, but the update is not a dict')
+            raise Exception(
+                f'trying to apply update\n  {update}\nto state\n  {state}\n'
+                f'with schema\n{schema}, but the update is not a dict')
 
         return state
 
@@ -244,8 +245,9 @@ class TypeSystem:
 
                     state[key] = subupdate
         else:
-            raise Exception(f'trying to apply update\n  {update}\nto state\n  {state}\nwith '
-                            f'schema\n{schema}, but the update is not a dict')
+            raise Exception(
+                f'trying to apply update\n  {update}\nto state\n  {state}\n'
+                f'with schema\n{schema}, but the update is not a dict')
 
         return state
 
@@ -294,6 +296,9 @@ class TypeSystem:
                 raise Exception(
                     f'deserialize function not in the registry: {deserialize}')
 
+            if encoded is None:
+                encoded = self.default(schema)
+
             return deserialize_function(
                 encoded,
                 found.get('_bindings'),
@@ -439,15 +444,15 @@ class TypeSystem:
             result = get_path(instance, list(path) + list(wires))
         elif isinstance(wires, dict):
             result = {}
-            for port_key in wires:
-                if port_key in instance:
+            for port_key, port_path in wires.items():
+                if isinstance(port_path, dict) or get_path(instance, port_path) is not None:
                     inner_view = self.view(
                         schema[port_key],
-                        wires[port_key],
+                        port_path,
                         path,
                         instance)
 
-                    if inner_view:
+                    if inner_view is not None:
                         result[port_key] = inner_view
         else:
             raise Exception(f'trying to project state with these ports:\n{schema}\nbut not sure what these wires are:\n{wires}')

{bigraph-schema-0.0.17 → bigraph-schema-0.0.18/bigraph_schema.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bigraph-schema
-Version: 0.0.17
+Version: 0.0.18
 Summary: A serializable type schema for compositional systems biology
 Home-page: https://github.com/vivarium-collective/bigraph-schema
 Author: Eran Agmon, Ryan Spangler

{bigraph-schema-0.0.17 → bigraph-schema-0.0.18}/setup.py

@@ -1,7 +1,7 @@
 from setuptools import setup, find_packages
 
 
-VERSION = '0.0.17'
+VERSION = '0.0.18'
 
 
 with open("README.md", "r") as readme: