bidsreader 0.1.0__tar.gz → 0.2.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (34) hide show
  1. {bidsreader-0.1.0 → bidsreader-0.2.0}/PKG-INFO +1 -1
  2. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/__init__.py +2 -1
  3. bidsreader-0.2.0/bidsreader/public_helpers.py +17 -0
  4. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader.egg-info/PKG-INFO +1 -1
  5. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader.egg-info/SOURCES.txt +1 -0
  6. {bidsreader-0.1.0 → bidsreader-0.2.0}/pyproject.toml +1 -1
  7. {bidsreader-0.1.0 → bidsreader-0.2.0}/.github/workflows/publish.yml +0 -0
  8. {bidsreader-0.1.0 → bidsreader-0.2.0}/.github/workflows/test.yml +0 -0
  9. {bidsreader-0.1.0 → bidsreader-0.2.0}/.gitignore +0 -0
  10. {bidsreader-0.1.0 → bidsreader-0.2.0}/LICENSE +0 -0
  11. {bidsreader-0.1.0 → bidsreader-0.2.0}/README.md +0 -0
  12. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/_errorwrap.py +0 -0
  13. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/basereader.py +0 -0
  14. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/cmlbidsreader.py +0 -0
  15. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/convert.py +0 -0
  16. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/exc.py +0 -0
  17. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/filtering.py +0 -0
  18. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/helpers.py +0 -0
  19. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/units.py +0 -0
  20. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader.egg-info/dependency_links.txt +0 -0
  21. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader.egg-info/requires.txt +0 -0
  22. {bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader.egg-info/top_level.txt +0 -0
  23. {bidsreader-0.1.0 → bidsreader-0.2.0}/setup.cfg +0 -0
  24. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/__init__.py +0 -0
  25. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/conftest.py +0 -0
  26. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_basereader.py +0 -0
  27. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_cmlbidsreader.py +0 -0
  28. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_convert.py +0 -0
  29. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_errorwrap.py +0 -0
  30. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_exc.py +0 -0
  31. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_filtering.py +0 -0
  32. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_helpers.py +0 -0
  33. {bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_units.py +0 -0
  34. {bidsreader-0.1.0 → bidsreader-0.2.0}/tutorials/bidsreader_tutorial.ipynb +0 -0
{bidsreader-0.1.0 → bidsreader-0.2.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bidsreader
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- Version: 0.1.0
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+ Version: 0.2.0
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  Summary: Data loader and file reader for the OpenBIDS format
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  Author: Computational Memory Lab
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  License-Expression: MIT
{bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/__init__.py RENAMED
@@ -8,8 +8,9 @@ from .filtering import (
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  )
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  from .convert import mne_epochs_to_ptsa, mne_raw_to_ptsa
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  from .units import detect_unit, get_scale_factor, convert_unit
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+ from .public_helpers import get_data_index
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  from collections import namedtuple
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- __version__ = "0.1.0"
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+ __version__ = "0.2.0"
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  version_info = namedtuple("VersionInfo", "major,minor,patch")(
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  *__version__.split('.'))
bidsreader-0.2.0/bidsreader/public_helpers.py ADDED
@@ -0,0 +1,17 @@
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+ # imports
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+ import pandas as pd
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+ from pathlib import Path
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+ import re
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+
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+ def get_data_index(root, task):
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+ root = Path(root)
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+ rows = []
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+
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+ pattern = re.compile(r"sub-(?P<sub>[^_]+)_ses-(?P<ses>[^_]+)_task-" + re.escape(task), re.IGNORECASE)
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+
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+ for f in root.rglob(f"*task-{task}*beh.tsv"):
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+ m = pattern.search(f.name)
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+ if m:
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+ rows.append({"subject": m.group("sub"), "task": task, "session": m.group("ses")})
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+
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+ return pd.DataFrame(rows).drop_duplicates().sort_values(["subject", "session"]).reset_index(drop=True)
{bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bidsreader
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- Version: 0.1.0
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+ Version: 0.2.0
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  Summary: Data loader and file reader for the OpenBIDS format
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  Author: Computational Memory Lab
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  License-Expression: MIT
{bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader.egg-info/SOURCES.txt RENAMED
@@ -12,6 +12,7 @@ bidsreader/convert.py
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  bidsreader/exc.py
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  bidsreader/filtering.py
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  bidsreader/helpers.py
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+ bidsreader/public_helpers.py
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  bidsreader/units.py
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  bidsreader.egg-info/PKG-INFO
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  bidsreader.egg-info/SOURCES.txt
{bidsreader-0.1.0 → bidsreader-0.2.0}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "bidsreader"
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- version = "0.1.0"
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+ version = "0.2.0"
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  description = "Data loader and file reader for the OpenBIDS format"
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  readme = "README.md"
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  license = "MIT"
{bidsreader-0.1.0 → bidsreader-0.2.0}/.gitignore RENAMED
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{bidsreader-0.1.0 → bidsreader-0.2.0}/LICENSE RENAMED
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{bidsreader-0.1.0 → bidsreader-0.2.0}/README.md RENAMED
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{bidsreader-0.1.0 → bidsreader-0.2.0}/bidsreader/exc.py RENAMED
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{bidsreader-0.1.0 → bidsreader-0.2.0}/setup.cfg RENAMED
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{bidsreader-0.1.0 → bidsreader-0.2.0}/tests/__init__.py RENAMED
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{bidsreader-0.1.0 → bidsreader-0.2.0}/tests/conftest.py RENAMED
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{bidsreader-0.1.0 → bidsreader-0.2.0}/tests/test_exc.py RENAMED
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