bids-validator-deno 2.0.6__tar.gz → 2.0.7__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of bids-validator-deno might be problematic. Click here for more details.

Files changed (104) hide show
  1. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/PKG-INFO +1 -1
  2. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/deno.json +1 -1
  3. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/pyproject.toml +3 -3
  4. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/tables.ts +8 -3
  5. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/LICENSE +0 -0
  6. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/README.md +0 -0
  7. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/pdm_build.py +0 -0
  8. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/.git-meta.json +0 -0
  9. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/bids-validator.ts +0 -0
  10. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/browser.test.ts +0 -0
  11. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/browser.ts +0 -0
  12. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/deno.test.ts +0 -0
  13. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/deno.ts +0 -0
  14. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/dwi.test.ts +0 -0
  15. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/dwi.ts +0 -0
  16. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/filetree.test.ts +0 -0
  17. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/filetree.ts +0 -0
  18. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/gzip.test.ts +0 -0
  19. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/gzip.ts +0 -0
  20. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/ignore.test.ts +0 -0
  21. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/ignore.ts +0 -0
  22. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/inheritance.test.ts +0 -0
  23. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/inheritance.ts +0 -0
  24. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/json.test.ts +0 -0
  25. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/json.ts +0 -0
  26. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/nifti.test.ts +0 -0
  27. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/nifti.ts +0 -0
  28. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/streams.test.ts +0 -0
  29. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/streams.ts +0 -0
  30. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/tiff.test.ts +0 -0
  31. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/tiff.ts +0 -0
  32. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/tsv.test.ts +0 -0
  33. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/files/tsv.ts +0 -0
  34. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/issues/datasetIssues.test.ts +0 -0
  35. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/issues/datasetIssues.ts +0 -0
  36. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/issues/list.test.ts +0 -0
  37. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/issues/list.ts +0 -0
  38. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/main.ts +0 -0
  39. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/applyRules.test.ts +0 -0
  40. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/applyRules.ts +0 -0
  41. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/associations.ts +0 -0
  42. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/context.test.ts +0 -0
  43. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/context.ts +0 -0
  44. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/entities.test.ts +0 -0
  45. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/entities.ts +0 -0
  46. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/expressionLanguage.test.ts +0 -0
  47. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/expressionLanguage.ts +0 -0
  48. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/fixtures.test.ts +0 -0
  49. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/modalities.ts +0 -0
  50. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/tables.test.ts +0 -0
  51. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/walk.test.ts +0 -0
  52. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/schema/walk.ts +0 -0
  53. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/setup/loadSchema.test.ts +0 -0
  54. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/setup/loadSchema.ts +0 -0
  55. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/setup/options.test.ts +0 -0
  56. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/setup/options.ts +0 -0
  57. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/setup/requestPermissions.ts +0 -0
  58. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/summary/collectSubjectMetadata.ts +0 -0
  59. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/summary/summary.test.ts +0 -0
  60. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/summary/summary.ts +0 -0
  61. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/README.md +0 -0
  62. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/bom-utf16.tsv +0 -0
  63. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/bom-utf8.json +0 -0
  64. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/generate-filenames.ts +0 -0
  65. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/local/bids_examples.test.ts +0 -0
  66. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/local/common.ts +0 -0
  67. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/local/derivatives.test.ts +0 -0
  68. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/local/empty_files.test.ts +0 -0
  69. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/local/hed-integration.test.ts +0 -0
  70. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/local/valid_dataset.test.ts +0 -0
  71. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/local/valid_filenames.test.ts +0 -0
  72. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/local/valid_headers.test.ts +0 -0
  73. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/nullReadBytes.ts +0 -0
  74. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/regression.test.ts +0 -0
  75. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/schema-expression-language.test.ts +0 -0
  76. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/simple-dataset.ts +0 -0
  77. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/tests/utils.ts +0 -0
  78. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/types/check.ts +0 -0
  79. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/types/columns.test.ts +0 -0
  80. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/types/columns.ts +0 -0
  81. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/types/filetree.ts +0 -0
  82. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/types/issues.ts +0 -0
  83. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/types/schema.ts +0 -0
  84. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/types/validation-result.ts +0 -0
  85. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/utils/errors.ts +0 -0
  86. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/utils/logger.test.ts +0 -0
  87. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/utils/logger.ts +0 -0
  88. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/utils/memoize.ts +0 -0
  89. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/utils/objectPathHandler.ts +0 -0
  90. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/utils/output.ts +0 -0
  91. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/bids.test.ts +0 -0
  92. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/bids.ts +0 -0
  93. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/citation.test.ts +0 -0
  94. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/citation.ts +0 -0
  95. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/filenameIdentify.test.ts +0 -0
  96. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/filenameIdentify.ts +0 -0
  97. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/filenameValidate.test.ts +0 -0
  98. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/filenameValidate.ts +0 -0
  99. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/hed.ts +0 -0
  100. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/internal/emptyFile.ts +0 -0
  101. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/internal/unusedFile.ts +0 -0
  102. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/json.ts +0 -0
  103. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/validators/validateFiles.test.ts +0 -0
  104. {bids_validator_deno-2.0.6 → bids_validator_deno-2.0.7}/src/version.ts +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bids-validator-deno
3
- Version: 2.0.6
3
+ Version: 2.0.7
4
4
  Summary: Typescript implementation of the BIDS validator
5
5
  Keywords: BIDS,BIDS validator
6
6
  Author: bids-standard developers
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@bids/validator",
3
- "version": "2.0.6",
3
+ "version": "2.0.7",
4
4
  "exports": {
5
5
  ".": "./src/bids-validator.ts",
6
6
  "./main": "./src/main.ts",
@@ -18,7 +18,7 @@ keywords = [
18
18
  "BIDS validator",
19
19
  ]
20
20
  dynamic = []
21
- version = "2.0.6"
21
+ version = "2.0.7"
22
22
 
23
23
  [project.license]
24
24
  text = "MIT"
@@ -55,8 +55,8 @@ scripts = [
55
55
  build = "cp39-*"
56
56
  skip = "*musllinux* *_i686 *-win32"
57
57
  build-frontend = "build"
58
- manylinux-x86_64-image = "quay.io/pypa/manylinux_2_24_x86_64:latest"
59
- manylinux-aarch64-image = "quay.io/pypa/manylinux_2_24_aarch64:latest"
58
+ manylinux-x86_64-image = "quay.io/pypa/manylinux_2_28_x86_64:latest"
59
+ manylinux-aarch64-image = "quay.io/pypa/manylinux_2_28_aarch64:latest"
60
60
  before-build = "curl -fsSL https://deno.land/install.sh | DENO_INSTALL=/usr/local sh && deno --version"
61
61
  test-command = "bids-validator-deno --version"
62
62
  overrides = [
@@ -239,6 +239,11 @@ export function evalAdditionalColumns(
239
239
  if (context.extension !== '.tsv') return
240
240
  const headers = Object.keys(context?.columns)
241
241
  if (rule.columns) {
242
+ if (!rule.additional_columns || rule.additional_columns === 'n/a' ) {
243
+ // Old schemas might be missing the field, so be permissive.
244
+ // New schemas indicate it is not applicable with 'n/a'.
245
+ return
246
+ }
242
247
  const ruleHeadersNames = Object.keys(rule.columns).map(
243
248
  // @ts-expect-error
244
249
  (x) => schema.objects.columns[x].name,
@@ -250,11 +255,11 @@ export function evalAdditionalColumns(
250
255
  if (rule.additional_columns?.startsWith('allowed')) {
251
256
  extraCols = extraCols.filter((header) => !(header in context.sidecar))
252
257
  }
253
- const code = rule.additional_columns === 'allowed'
254
- ? 'TSV_ADDITIONAL_COLUMNS_UNDEFINED'
258
+ const code = rule.additional_columns === 'not_allowed'
259
+ ? 'TSV_ADDITIONAL_COLUMNS_NOT_ALLOWED'
255
260
  : rule.additional_columns === 'allowed_if_defined'
256
261
  ? 'TSV_ADDITIONAL_COLUMNS_MUST_DEFINE'
257
- : 'TSV_ADDITIONAL_COLUMNS_NOT_ALLOWED'
262
+ : 'TSV_ADDITIONAL_COLUMNS_UNDEFINED'
258
263
  const issue = {
259
264
  code,
260
265
  location: context.path,