bibsync 0.4.2__tar.gz → 0.4.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. {bibsync-0.4.2 → bibsync-0.4.4}/.pre-commit-config.yaml +3 -3
  2. bibsync-0.4.4/.pre-commit-hooks.yaml +12 -0
  3. {bibsync-0.4.2 → bibsync-0.4.4}/CITATION.cff +2 -2
  4. {bibsync-0.4.2 → bibsync-0.4.4}/Cargo.lock +29 -29
  5. {bibsync-0.4.2 → bibsync-0.4.4}/Cargo.toml +2 -2
  6. {bibsync-0.4.2 → bibsync-0.4.4}/PKG-INFO +30 -6
  7. {bibsync-0.4.2 → bibsync-0.4.4}/README.md +29 -5
  8. {bibsync-0.4.2 → bibsync-0.4.4}/pyproject.toml +1 -1
  9. bibsync-0.4.4/uv.lock +158 -0
  10. bibsync-0.4.2/.pre-commit-hooks.yaml +0 -12
  11. bibsync-0.4.2/uv.lock +0 -158
  12. {bibsync-0.4.2 → bibsync-0.4.4}/.gitignore +0 -0
  13. {bibsync-0.4.2 → bibsync-0.4.4}/.markdownlint.yaml +0 -0
  14. {bibsync-0.4.2 → bibsync-0.4.4}/.prettierrc +0 -0
  15. {bibsync-0.4.2 → bibsync-0.4.4}/.typos.toml +0 -0
  16. {bibsync-0.4.2 → bibsync-0.4.4}/CODE_OF_CONDUCT.md +0 -0
  17. {bibsync-0.4.2 → bibsync-0.4.4}/CONTRIBUTING.md +0 -0
  18. {bibsync-0.4.2 → bibsync-0.4.4}/LICENSE +0 -0
  19. {bibsync-0.4.2 → bibsync-0.4.4}/SECURITY.md +0 -0
  20. {bibsync-0.4.2 → bibsync-0.4.4}/SUPPORT.md +0 -0
  21. {bibsync-0.4.2 → bibsync-0.4.4}/benches/greeting.rs +0 -0
  22. {bibsync-0.4.2 → bibsync-0.4.4}/cliff.toml +0 -0
  23. {bibsync-0.4.2 → bibsync-0.4.4}/deny.toml +0 -0
  24. {bibsync-0.4.2 → bibsync-0.4.4}/docs/api/index.md +0 -0
  25. {bibsync-0.4.2 → bibsync-0.4.4}/docs/contributing.md +0 -0
  26. {bibsync-0.4.2 → bibsync-0.4.4}/docs/index.md +0 -0
  27. {bibsync-0.4.2 → bibsync-0.4.4}/docs/security.md +0 -0
  28. {bibsync-0.4.2 → bibsync-0.4.4}/docs/user-guide/examples.md +0 -0
  29. {bibsync-0.4.2 → bibsync-0.4.4}/docs/user-guide/installation.md +0 -0
  30. {bibsync-0.4.2 → bibsync-0.4.4}/docs/user-guide/pre-commit.md +0 -0
  31. {bibsync-0.4.2 → bibsync-0.4.4}/docs/user-guide/providers.md +0 -0
  32. {bibsync-0.4.2 → bibsync-0.4.4}/docs/user-guide/usage.md +0 -0
  33. {bibsync-0.4.2 → bibsync-0.4.4}/examples/README.md +0 -0
  34. {bibsync-0.4.2 → bibsync-0.4.4}/examples/greet.rs +0 -0
  35. {bibsync-0.4.2 → bibsync-0.4.4}/examples/inspire-main.bib +0 -0
  36. {bibsync-0.4.2 → bibsync-0.4.4}/examples/inspire-main.tex +0 -0
  37. {bibsync-0.4.2 → bibsync-0.4.4}/examples/main.bib +0 -0
  38. {bibsync-0.4.2 → bibsync-0.4.4}/examples/main.tex +0 -0
  39. {bibsync-0.4.2 → bibsync-0.4.4}/python/bibsync/__init__.py +0 -0
  40. {bibsync-0.4.2 → bibsync-0.4.4}/python/bibsync/__init__.pyi +0 -0
  41. {bibsync-0.4.2 → bibsync-0.4.4}/python/bibsync/__main__.py +0 -0
  42. {bibsync-0.4.2 → bibsync-0.4.4}/python/bibsync/py.typed +0 -0
  43. {bibsync-0.4.2 → bibsync-0.4.4}/renovate.json +0 -0
  44. {bibsync-0.4.2 → bibsync-0.4.4}/rust-toolchain.toml +0 -0
  45. {bibsync-0.4.2 → bibsync-0.4.4}/scripts/pre-commit-bibsync +0 -0
  46. {bibsync-0.4.2 → bibsync-0.4.4}/setup_repo.sh +0 -0
  47. {bibsync-0.4.2 → bibsync-0.4.4}/src/cli.rs +0 -0
  48. {bibsync-0.4.2 → bibsync-0.4.4}/src/lib.rs +0 -0
  49. {bibsync-0.4.2 → bibsync-0.4.4}/src/main.rs +0 -0
  50. {bibsync-0.4.2 → bibsync-0.4.4}/src/python.rs +0 -0
  51. {bibsync-0.4.2 → bibsync-0.4.4}/tests/cli.rs +0 -0
  52. {bibsync-0.4.2 → bibsync-0.4.4}/tests/examples.rs +0 -0
  53. {bibsync-0.4.2 → bibsync-0.4.4}/tests/python/test_bindings.py +0 -0
  54. {bibsync-0.4.2 → bibsync-0.4.4}/zensical.toml +0 -0
@@ -31,14 +31,14 @@ repos:
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  pass_filenames: false
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  - repo: https://github.com/astral-sh/ruff-pre-commit
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- rev: v0.15.20
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+ rev: v0.15.21
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  hooks:
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  - id: ruff
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  args: [--fix, --config=pyproject.toml]
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  - id: ruff-format
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  - repo: https://github.com/astral-sh/uv-pre-commit
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- rev: 0.11.26
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+ rev: 0.11.28
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  hooks:
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  - id: uv-lock
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@@ -59,7 +59,7 @@ repos:
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  args: []
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  - repo: https://github.com/rbubley/mirrors-prettier
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- rev: v3.9.4
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+ rev: v3.9.5
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  hooks:
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  - id: prettier
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@@ -0,0 +1,12 @@
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+ - id: bibsync
2
+ name: bibsync
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+ description: Synchronize BibTeX entries from TeX and Markdown citation keys
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+ entry: bibsync
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+ language: rust
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+ types_or: [tex, bib, markdown]
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+ - id: bibsync-bin
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+ name: bibsync
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+ description: Synchronize BibTeX entries from TeX and Markdown citation keys using a pre-built release binary
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+ entry: scripts/pre-commit-bibsync
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+ language: script
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+ types_or: [tex, bib, markdown]
@@ -1,7 +1,7 @@
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  cff-version: 1.2.0
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  title: "bibsync: A Rust package to automatically resolve, synchronize, and validate LaTeX citations across BibTeX databases"
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- version: "0.4.2"
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- date-released: "2026-07-07"
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+ version: "0.4.4"
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+ date-released: "2026-07-14"
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  license: "BSD-3-Clause"
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  type: software
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  authors:
@@ -119,7 +119,7 @@ checksum = "72b3254f16251a8381aa12e40e3c4d2f0199f8c6508fbecb9d91f575e0fbb8c6"
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  [[package]]
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  name = "bibsync"
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- version = "0.4.2"
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+ version = "0.4.4"
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  dependencies = [
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  "assert_cmd",
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  "clap",
@@ -159,15 +159,15 @@ checksum = "72f5acc6cb2ba439de613abc23857ec3d78374d8ed5ac84e9d11336e87da8649"
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  [[package]]
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  name = "bytes"
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- version = "1.12.0"
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+ version = "1.12.1"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "8ae3f5d315924270530207e2a68396c3cc547f6dca3fbdca317cfb1a51edb593"
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+ checksum = "fc652a48c352aef3ea3aed32080501cf3ef6ed5da78602a020c991775b0aff04"
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  name = "cc"
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- version = "1.2.66"
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+ version = "1.2.67"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "f5d6cac793997bd970000024b2934968efe83b382de4fdcf4fcb46b6ee4ad996"
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+ checksum = "e17dd265a7d0f31ef544e1b20e03add05d3b45b491b633b10d67145d2acc1a38"
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  dependencies = [
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@@ -483,9 +483,9 @@ dependencies = [
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  name = "http-body"
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- version = "1.0.1"
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+ version = "1.1.0"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "1efedce1fb8e6913f23e0c92de8e62cd5b772a67e7b3946df930a62566c93184"
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+ checksum = "ca2a8f2913ee65f60facd6a5905613afaa448497a0230cc41ce022d93290bc2c"
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  dependencies = [
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@@ -493,9 +493,9 @@ dependencies = [
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  name = "http-body-util"
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- version = "0.1.3"
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+ version = "0.1.4"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "b021d93e26becf5dc7e1b75b1bed1fd93124b374ceb73f43d4d4eafec896a64a"
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+ checksum = "e9f41fd6a08e4d4ec69df65976da761afd5ad5e58a9d4acb46bd1c953a9e3ff2"
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  dependencies = [
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  "bytes",
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  "futures-core",
@@ -790,15 +790,15 @@ checksum = "112b39cec0b298b6c1999fee3e31427f74f676e4cb9879ed1a121b43661a4154"
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  name = "memchr"
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- version = "2.8.2"
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+ version = "2.8.3"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "88904434abc2901f197fe8cc55f0445e7ded921dba5911dad2e2b39b48e663c4"
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+ checksum = "cf8baf1c55e62ffcace7a9f06f4bd9cd3f0c4beb022d3b367256b91b87513d98"
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  name = "mio"
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+ version = "1.2.2"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "02bd0af71c67b473010cbbc60715ee815645a4dc942899111f494b4b737d6fda"
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+ checksum = "30d65c71f1ce40ab09135ce117d742b9f8a19ff91a41a8b57ed50bc2de59c427"
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  dependencies = [
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@@ -1067,9 +1067,9 @@ dependencies = [
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- version = "1.12.4"
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+ version = "1.13.0"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "f1292b7759ae1cb9ec195452d1390a074f0cd8541ab7a5a8c31cd6db45d4a6ba"
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+ checksum = "2a0e75113e14dc5acb068cd0786884f214f1312650a3d36d269f5c4f3cdee8a2"
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  dependencies = [
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@@ -1079,9 +1079,9 @@ dependencies = [
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  name = "regex-automata"
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+ version = "0.4.15"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "6e1dd4122fc1595e8162618945476892eefca7b88c52820e74af6262213cae8f"
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+ checksum = "1f388202e4b80542a0921078cc23b6333bcf1409c1e3f86404cae4766a6131db"
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@@ -1184,9 +1184,9 @@ dependencies = [
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- checksum = "6b92b125634d9b795e7beca796cc790df15a7fb38323bf3196fda83292d06b1f"
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+ checksum = "3c54fcab019b409d04215d3a17cb438fd7fbf192ee61461f20f4fe18704bc138"
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@@ -1259,9 +1259,9 @@ dependencies = [
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- checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d"
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@@ -1379,9 +1379,9 @@ checksum = "f8fadd59c855ef2080decdef8ff161eb6661b86933c9d82e5ba29dc602a55aba"
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- checksum = "94f90157bb87cddf702797c5dadfa0be7d266cdf49e22da2fcaa32eff75b2c33"
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+ checksum = "11031e251abf8611c80f460e19dbdeb54a66db918e49c65a7065b46ac7aec520"
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@@ -1407,9 +1407,9 @@ checksum = "8ed6a63f02c8539c91a8685a86f4099661ba3da017932f6ebbea6de3f0fa7c90"
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- checksum = "52d1cfed4120b4d927bf7c0f86d2087a4a7d6027c906d9f9d525a80573b9be51"
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@@ -1531,9 +1531,9 @@ dependencies = [
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@@ -1980,6 +1980,6 @@ dependencies = [
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@@ -1,6 +1,6 @@
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  [package]
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  name = "bibsync"
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- version = "0.4.2"
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+ version = "0.4.4"
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  edition = "2024"
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  rust-version = "1.85"
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  authors = ["Isaac C. F. Wong"]
@@ -17,7 +17,7 @@ exclude = ["/.github", "/docs/template_documentation"]
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  [dependencies]
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+ regex = "1.13.0"
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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bibsync
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- Version: 0.4.2
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+ Version: 0.4.4
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  Classifier: Development Status :: 4 - Beta
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  Classifier: Environment :: Console
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  Classifier: Intended Audience :: Science/Research
@@ -134,7 +134,7 @@ For convenience, you can also use:
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  @software{wong2026bibsync,
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  author = {Wong, Isaac C. F.},
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  title = {bibsync: A Rust package to automatically resolve, synchronize, and validate LaTeX citations across BibTeX databases},
137
- version = {v0.4.2},
137
+ version = {v0.4.4},
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  year = {2026},
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  month = jul,
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  doi = {10.5281/zenodo.20422622},
@@ -281,12 +281,36 @@ provider and citekey or batch being resolved.
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  The repository includes `.pre-commit-hooks.yaml`, so other projects can use
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  `bibsync` as a pre-commit hook.
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284
+ Both hooks run on TeX (`.tex`), BibTeX (`.bib`), and Markdown (`.md`) files.
285
+ Every `@key` in a scanned file is treated as a citation, so scanning unrelated
286
+ Markdown can raise false positives — for example a `README.md` that uses GitHub
287
+ `@mentions`. **The recommended setup is to scope the hook to your citation
288
+ sources with `files:`** rather than relying on the default file matching.
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+
290
+ For a JOSS paper (`paper.md` + `paper.bib`):
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+
292
+ ```yaml
293
+ repos:
294
+ - repo: https://github.com/isaac-cf-wong/bibsync
295
+ rev: v0.4.4
296
+ hooks:
297
+ - id: bibsync-bin
298
+ files: ^paper\.md$
299
+ args: [--fix, --cache, --provider, inspire, --output, paper.bib]
300
+ ```
301
+
302
+ The `--output` bibliography is read and written even when it is not itself
303
+ matched by `files:`, so scoping to `paper.md` still keeps `paper.bib` in sync.
304
+
305
+ The remaining examples below omit `files:` for brevity; add it to match your
306
+ project layout.
307
+
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  Use the pre-built binary hook for faster installs:
285
309
 
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  ```yaml
287
311
  repos:
288
312
  - repo: https://github.com/isaac-cf-wong/bibsync
289
- rev: v0.4.2
313
+ rev: v0.4.4
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  hooks:
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315
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  args: [--cache, --provider, inspire, --output, references.bib]
@@ -301,7 +325,7 @@ installation:
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  ```yaml
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326
  repos:
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327
  - repo: https://github.com/isaac-cf-wong/bibsync
304
- rev: v0.4.2
328
+ rev: v0.4.4
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  args: [--provider, inspire, --output, references.bib]
@@ -313,7 +337,7 @@ writing changes. To let the hook update files, add `--fix` to the hook args:
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  ```yaml
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  repos:
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339
  - repo: https://github.com/isaac-cf-wong/bibsync
316
- rev: v0.4.2
340
+ rev: v0.4.4
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318
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  args: [--fix, --cache, --provider, inspire, --output, references.bib]
@@ -324,7 +348,7 @@ To skip manually curated entries, add `--ignore-file`:
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  ```yaml
325
349
  repos:
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350
  - repo: https://github.com/isaac-cf-wong/bibsync
327
- rev: v0.4.2
351
+ rev: v0.4.4
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  - id: bibsync-bin
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  args:
@@ -107,7 +107,7 @@ For convenience, you can also use:
107
107
  @software{wong2026bibsync,
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  author = {Wong, Isaac C. F.},
109
109
  title = {bibsync: A Rust package to automatically resolve, synchronize, and validate LaTeX citations across BibTeX databases},
110
- version = {v0.4.2},
110
+ version = {v0.4.4},
111
111
  year = {2026},
112
112
  month = jul,
113
113
  doi = {10.5281/zenodo.20422622},
@@ -254,12 +254,36 @@ provider and citekey or batch being resolved.
254
254
  The repository includes `.pre-commit-hooks.yaml`, so other projects can use
255
255
  `bibsync` as a pre-commit hook.
256
256
 
257
+ Both hooks run on TeX (`.tex`), BibTeX (`.bib`), and Markdown (`.md`) files.
258
+ Every `@key` in a scanned file is treated as a citation, so scanning unrelated
259
+ Markdown can raise false positives — for example a `README.md` that uses GitHub
260
+ `@mentions`. **The recommended setup is to scope the hook to your citation
261
+ sources with `files:`** rather than relying on the default file matching.
262
+
263
+ For a JOSS paper (`paper.md` + `paper.bib`):
264
+
265
+ ```yaml
266
+ repos:
267
+ - repo: https://github.com/isaac-cf-wong/bibsync
268
+ rev: v0.4.4
269
+ hooks:
270
+ - id: bibsync-bin
271
+ files: ^paper\.md$
272
+ args: [--fix, --cache, --provider, inspire, --output, paper.bib]
273
+ ```
274
+
275
+ The `--output` bibliography is read and written even when it is not itself
276
+ matched by `files:`, so scoping to `paper.md` still keeps `paper.bib` in sync.
277
+
278
+ The remaining examples below omit `files:` for brevity; add it to match your
279
+ project layout.
280
+
257
281
  Use the pre-built binary hook for faster installs:
258
282
 
259
283
  ```yaml
260
284
  repos:
261
285
  - repo: https://github.com/isaac-cf-wong/bibsync
262
- rev: v0.4.2
286
+ rev: v0.4.4
263
287
  hooks:
264
288
  - id: bibsync-bin
265
289
  args: [--cache, --provider, inspire, --output, references.bib]
@@ -274,7 +298,7 @@ installation:
274
298
  ```yaml
275
299
  repos:
276
300
  - repo: https://github.com/isaac-cf-wong/bibsync
277
- rev: v0.4.2
301
+ rev: v0.4.4
278
302
  hooks:
279
303
  - id: bibsync
280
304
  args: [--provider, inspire, --output, references.bib]
@@ -286,7 +310,7 @@ writing changes. To let the hook update files, add `--fix` to the hook args:
286
310
  ```yaml
287
311
  repos:
288
312
  - repo: https://github.com/isaac-cf-wong/bibsync
289
- rev: v0.4.2
313
+ rev: v0.4.4
290
314
  hooks:
291
315
  - id: bibsync-bin
292
316
  args: [--fix, --cache, --provider, inspire, --output, references.bib]
@@ -297,7 +321,7 @@ To skip manually curated entries, add `--ignore-file`:
297
321
  ```yaml
298
322
  repos:
299
323
  - repo: https://github.com/isaac-cf-wong/bibsync
300
- rev: v0.4.2
324
+ rev: v0.4.4
301
325
  hooks:
302
326
  - id: bibsync-bin
303
327
  args:
@@ -26,7 +26,7 @@ classifiers = [
26
26
  dynamic = ["version"]
27
27
 
28
28
  [dependency-groups]
29
- dev = ["pytest>=9.1.1", "ruff>=0.15.20", "prek>=0.4.6"]
29
+ dev = ["pytest>=9.1.1", "ruff>=0.15.21", "prek>=0.4.8"]
30
30
  build = ["maturin>=1.14.1,<2"]
31
31
 
32
32
  [project.urls]
bibsync-0.4.4/uv.lock ADDED
@@ -0,0 +1,158 @@
1
+ version = 1
2
+ revision = 3
3
+ requires-python = ">=3.12"
4
+
5
+ [[package]]
6
+ name = "bibsync"
7
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8
+
9
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10
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12
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15
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16
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17
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19
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20
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21
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22
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23
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25
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