bibsync 0.4.1__tar.gz → 0.4.3__tar.gz

{bibsync-0.4.1 → bibsync-0.4.3}/.pre-commit-config.yaml

@@ -38,7 +38,7 @@ repos:
           - id: ruff-format
 
     - repo: https://github.com/astral-sh/uv-pre-commit
-      rev: 0.11.25
+      rev: 0.11.27
       hooks:
           - id: uv-lock
 
@@ -53,18 +53,18 @@ repos:
           - id: taplo-format
 
     - repo: https://github.com/crate-ci/typos
-      rev: v1.47.2
+      rev: v1.48.0
       hooks:
           - id: typos
             args: []
 
     - repo: https://github.com/rbubley/mirrors-prettier
-      rev: v3.9.1
+      rev: v3.9.4
       hooks:
           - id: prettier
 
     - repo: https://github.com/DavidAnson/markdownlint-cli2
-      rev: v0.22.1
+      rev: v0.23.0
       hooks:
           - id: markdownlint-cli2
             args: [--config, .markdownlint.yaml]

bibsync-0.4.3/.pre-commit-hooks.yaml

@@ -0,0 +1,12 @@
+- id: bibsync
+  name: bibsync
+  description: Synchronize BibTeX entries from TeX and Markdown citation keys
+  entry: bibsync
+  language: rust
+  types_or: [tex, bib, markdown]
+- id: bibsync-bin
+  name: bibsync
+  description: Synchronize BibTeX entries from TeX and Markdown citation keys using a pre-built release binary
+  entry: scripts/pre-commit-bibsync
+  language: script
+  types_or: [tex, bib, markdown]

{bibsync-0.4.1 → bibsync-0.4.3}/CITATION.cff

@@ -1,7 +1,7 @@
 cff-version: 1.2.0
 title: "bibsync: A Rust package to automatically resolve, synchronize, and validate LaTeX citations across BibTeX databases"
-version: "0.4.1"
-date-released: "2026-06-30"
+version: "0.4.3"
+date-released: "2026-07-07"
 license: "BSD-3-Clause"
 type: software
 authors:

{bibsync-0.4.1 → bibsync-0.4.3}/Cargo.lock

@@ -90,9 +90,9 @@ checksum = "f2032f911046de80f0a198e0901378627c33f59ea0ac00e363d481118bd70a53"
 
 [[package]]
 name = "aws-lc-rs"
-version = "1.17.0"
+version = "1.17.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5ec2f1fc3ec205783a5da9a7e6c1509cc69dedf09a1949e412c1e18469326d00"
+checksum = "4342d8937fc7e5dd9b1c60292261c0670c882a2cd1719cfc11b1af41731e32ad"
 dependencies = [
  "aws-lc-sys",
  "zeroize",
@@ -100,14 +100,15 @@ dependencies = [
 
 [[package]]
 name = "aws-lc-sys"
-version = "0.41.0"
+version = "0.42.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1a2f9779ce85b93ab6170dd940ad0169b5766ff848247aff13bb788b832fe3f4"
+checksum = "6d9ceb1da931507a12f4fccea479dccd00da1943e1b4ae72d8e502d707361444"
 dependencies = [
  "cc",
  "cmake",
  "dunce",
  "fs_extra",
+ "pkg-config",
 ]
 
 [[package]]
@@ -118,7 +119,7 @@ checksum = "72b3254f16251a8381aa12e40e3c4d2f0199f8c6508fbecb9d91f575e0fbb8c6"
 
 [[package]]
 name = "bibsync"
-version = "0.4.1"
+version = "0.4.3"
 dependencies = [
  "assert_cmd",
  "clap",
@@ -164,9 +165,9 @@ checksum = "8ae3f5d315924270530207e2a68396c3cc547f6dca3fbdca317cfb1a51edb593"
 
 [[package]]
 name = "cc"
-version = "1.2.65"
+version = "1.2.66"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e228eec9be7c17ccb640b59b36a5cd805ea2a564a4c5e162c2f659fea30d3b96"
+checksum = "f5d6cac793997bd970000024b2934968efe83b382de4fdcf4fcb46b6ee4ad996"
 dependencies = [
  "find-msvc-tools",
  "jobserver",
@@ -186,6 +187,17 @@ version = "0.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "613afe47fcd5fac7ccf1db93babcb082c5994d996f20b8b159f2ad1658eb5724"
 
+[[package]]
+name = "chacha20"
+version = "0.10.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d524456ba66e72eb8b115ff89e01e497f8e6d11d78b70b1aa13c0fbd97540a81"
+dependencies = [
+ "cfg-if",
+ "cpufeatures",
+ "rand_core",
+]
+
 [[package]]
 name = "clap"
 version = "4.6.1"
@@ -274,6 +286,15 @@ version = "0.8.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "773648b94d0e5d620f64f280777445740e61fe701025087ec8b57f45c791888b"
 
+[[package]]
+name = "cpufeatures"
+version = "0.3.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "8b2a41393f66f16b0823bb79094d54ac5fbd34ab292ddafb9a0456ac9f87d201"
+dependencies = [
+ "libc",
+]
+
 [[package]]
 name = "difflib"
 version = "0.4.0"
@@ -430,20 +451,6 @@ dependencies = [
  "wasm-bindgen",
 ]
 
-[[package]]
-name = "getrandom"
-version = "0.3.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "899def5c37c4fd7b2664648c28120ecec138e4d395b459e5ca34f9cce2dd77fd"
-dependencies = [
- "cfg-if",
- "js-sys",
- "libc",
- "r-efi 5.3.0",
- "wasip2",
- "wasm-bindgen",
-]
-
 [[package]]
 name = "getrandom"
 version = "0.4.3"
@@ -451,8 +458,11 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "300e883d756b2e4ec94e02791f39b04b522276138852cfc41d9fb7e904106099"
 dependencies = [
  "cfg-if",
+ "js-sys",
  "libc",
- "r-efi 6.0.0",
+ "r-efi",
+ "rand_core",
+ "wasm-bindgen",
 ]
 
 [[package]]
@@ -729,11 +739,11 @@ dependencies = [
 
 [[package]]
 name = "jobserver"
-version = "0.1.34"
+version = "0.1.35"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9afb3de4395d6b3e67a780b6de64b51c978ecf11cb9a462c66be7d4ca9039d33"
+checksum = "1c00acbd29eabad4a2392fa0e921c874934dbbf4194312ad20f04a0ed67a3cb3"
 dependencies = [
- "getrandom 0.3.4",
+ "getrandom 0.4.3",
  "libc",
 ]
 
@@ -840,6 +850,12 @@ version = "0.2.17"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "a89322df9ebe1c1578d689c92318e070967d1042b512afbe49518723f4e6d5cd"
 
+[[package]]
+name = "pkg-config"
+version = "0.3.33"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "19f132c84eca552bf34cab8ec81f1c1dcc229b811638f9d283dceabe58c5569e"
+
 [[package]]
 name = "portable-atomic"
 version = "1.13.1"
@@ -855,15 +871,6 @@ dependencies = [
  "zerovec",
 ]
 
-[[package]]
-name = "ppv-lite86"
-version = "0.2.21"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "85eae3c4ed2f50dcfe72643da4befc30deadb458a9b590d720cde2f2b1e97da9"
-dependencies = [
- "zerocopy",
-]
-
 [[package]]
 name = "predicates"
 version = "3.1.4"
@@ -982,15 +989,16 @@ dependencies = [
 
 [[package]]
 name = "quinn-proto"
-version = "0.11.15"
+version = "0.11.16"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4fcb935c5bec503c2f0e306bdd3e58bb9029dcb14fa8d9ac76e3a5256ac0763e"
+checksum = "2f4bfc015262b9df63c8845072ce59068853ff5872180c2ce2f13038b970e560"
 dependencies = [
  "aws-lc-rs",
  "bytes",
- "getrandom 0.3.4",
+ "getrandom 0.4.3",
  "lru-slab",
  "rand",
+ "rand_pcg",
  "ring",
  "rustc-hash",
  "rustls",
@@ -1004,16 +1012,16 @@ dependencies = [
 
 [[package]]
 name = "quinn-udp"
-version = "0.5.14"
+version = "0.5.15"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "addec6a0dcad8a8d96a771f815f0eaf55f9d1805756410b39f5fa81332574cbd"
+checksum = "35a133f956daabe89a61a685c2649f13d82d5aa4bd5d12d1277e1072a21c0694"
 dependencies = [
  "cfg_aliases",
  "libc",
  "once_cell",
  "socket2",
  "tracing",
- "windows-sys 0.60.2",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -1025,12 +1033,6 @@ dependencies = [
  "proc-macro2",
 ]
 
-[[package]]
-name = "r-efi"
-version = "5.3.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f"
-
 [[package]]
 name = "r-efi"
 version = "6.0.0"
@@ -1039,31 +1041,28 @@ checksum = "f8dcc9c7d52a811697d2151c701e0d08956f92b0e24136cf4cf27b57a6a0d9bf"
 
 [[package]]
 name = "rand"
-version = "0.9.4"
+version = "0.10.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "44c5af06bb1b7d3216d91932aed5265164bf384dc89cd6ba05cf59a35f5f76ea"
+checksum = "c7f5fa3a058cd35567ef9bfa5e75732bee0f9e4c55fa90477bef2dfcdbc4be80"
 dependencies = [
- "rand_chacha",
+ "chacha20",
+ "getrandom 0.4.3",
  "rand_core",
 ]
 
 [[package]]
-name = "rand_chacha"
-version = "0.9.0"
+name = "rand_core"
+version = "0.10.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d3022b5f1df60f26e1ffddd6c66e8aa15de382ae63b3a0c1bfc0e4d3e3f325cb"
-dependencies = [
- "ppv-lite86",
- "rand_core",
-]
+checksum = "63b8176103e19a2643978565ca18b50549f6101881c443590420e4dc998a3c69"
 
 [[package]]
-name = "rand_core"
-version = "0.9.5"
+name = "rand_pcg"
+version = "0.10.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "76afc826de14238e6e8c374ddcc1fa19e374fd8dd986b0d2af0d02377261d83c"
+checksum = "caa0f4137e1c0a72f4c651489402276c8e8e1cf081f3b0ba156d2cbeef09e86a"
 dependencies = [
- "getrandom 0.3.4",
+ "rand_core",
 ]
 
 [[package]]
@@ -1157,9 +1156,9 @@ dependencies = [
 
 [[package]]
 name = "rustc-hash"
-version = "2.1.2"
+version = "2.1.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "94300abf3f1ae2e2b8ffb7b58043de3d399c73fa6f4b73826402a5c457614dbe"
+checksum = "6b1e7f9a428571be2dc5bc0505c13fb6bf936822b894ec87abf8a08a4e51742d"
 
 [[package]]
 name = "rustc_version"
@@ -1211,9 +1210,9 @@ dependencies = [
 
 [[package]]
 name = "rustls-pki-types"
-version = "1.14.1"
+version = "1.15.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "30a7197ae7eb376e574fe940d068c30fe0462554a3ddbe4eca7838e049c937a9"
+checksum = "764899a24af3980067ee14bc143654f297b22eaebfe3c7b6b211920a5a59b046"
 dependencies = [
  "web-time",
  "zeroize",
@@ -1260,9 +1259,9 @@ dependencies = [
 
 [[package]]
 name = "rustversion"
-version = "1.0.22"
+version = "1.0.23"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d"
+checksum = "cf54715a573b99ac80df0bc206da022bcd442c974952c7b9720069370852e21f"
 
 [[package]]
 name = "ryu"
@@ -1709,15 +1708,6 @@ version = "0.11.1+wasi-snapshot-preview1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ccf3ec651a847eb01de73ccad15eb7d99f80485de043efb2f370cd654f4ea44b"
 
-[[package]]
-name = "wasip2"
-version = "1.0.1+wasi-0.2.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0562428422c63773dad2c345a1882263bbf4d65cf3f42e90921f787ef5ad58e7"
-dependencies = [
- "wit-bindgen",
-]
-
 [[package]]
 name = "wasm-bindgen"
 version = "0.2.126"
@@ -1823,16 +1813,7 @@ version = "0.52.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d"
 dependencies = [
- "windows-targets 0.52.6",
-]
-
-[[package]]
-name = "windows-sys"
-version = "0.60.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f2f500e4d28234f72040990ec9d39e3a6b950f9f22d3dba18416c35882612bcb"
-dependencies = [
- "windows-targets 0.53.5",
+ "windows-targets",
 ]
 
 [[package]]
@@ -1850,31 +1831,14 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
 dependencies = [
- "windows_aarch64_gnullvm 0.52.6",
- "windows_aarch64_msvc 0.52.6",
- "windows_i686_gnu 0.52.6",
- "windows_i686_gnullvm 0.52.6",
- "windows_i686_msvc 0.52.6",
- "windows_x86_64_gnu 0.52.6",
- "windows_x86_64_gnullvm 0.52.6",
- "windows_x86_64_msvc 0.52.6",
-]
-
-[[package]]
-name = "windows-targets"
-version = "0.53.5"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4945f9f551b88e0d65f3db0bc25c33b8acea4d9e41163edf90dcd0b19f9069f3"
-dependencies = [
- "windows-link",
- "windows_aarch64_gnullvm 0.53.1",
- "windows_aarch64_msvc 0.53.1",
- "windows_i686_gnu 0.53.1",
- "windows_i686_gnullvm 0.53.1",
- "windows_i686_msvc 0.53.1",
- "windows_x86_64_gnu 0.53.1",
- "windows_x86_64_gnullvm 0.53.1",
- "windows_x86_64_msvc 0.53.1",
+ "windows_aarch64_gnullvm",
+ "windows_aarch64_msvc",
+ "windows_i686_gnu",
+ "windows_i686_gnullvm",
+ "windows_i686_msvc",
+ "windows_x86_64_gnu",
+ "windows_x86_64_gnullvm",
+ "windows_x86_64_msvc",
 ]
 
 [[package]]
@@ -1883,102 +1847,48 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
 
-[[package]]
-name = "windows_aarch64_gnullvm"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a9d8416fa8b42f5c947f8482c43e7d89e73a173cead56d044f6a56104a6d1b53"
-
 [[package]]
 name = "windows_aarch64_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
 
-[[package]]
-name = "windows_aarch64_msvc"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b9d782e804c2f632e395708e99a94275910eb9100b2114651e04744e9b125006"
-
 [[package]]
 name = "windows_i686_gnu"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
 
-[[package]]
-name = "windows_i686_gnu"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "960e6da069d81e09becb0ca57a65220ddff016ff2d6af6a223cf372a506593a3"
-
 [[package]]
 name = "windows_i686_gnullvm"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
 
-[[package]]
-name = "windows_i686_gnullvm"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fa7359d10048f68ab8b09fa71c3daccfb0e9b559aed648a8f95469c27057180c"
-
 [[package]]
 name = "windows_i686_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
 
-[[package]]
-name = "windows_i686_msvc"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e7ac75179f18232fe9c285163565a57ef8d3c89254a30685b57d83a38d326c2"
-
 [[package]]
 name = "windows_x86_64_gnu"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
 
-[[package]]
-name = "windows_x86_64_gnu"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9c3842cdd74a865a8066ab39c8a7a473c0778a3f29370b5fd6b4b9aa7df4a499"
-
 [[package]]
 name = "windows_x86_64_gnullvm"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
 
-[[package]]
-name = "windows_x86_64_gnullvm"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0ffa179e2d07eee8ad8f57493436566c7cc30ac536a3379fdf008f47f6bb7ae1"
-
 [[package]]
 name = "windows_x86_64_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
 
-[[package]]
-name = "windows_x86_64_msvc"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d6bbff5f0aada427a1e5a6da5f1f98158182f26556f345ac9e04d36d0ebed650"
-
-[[package]]
-name = "wit-bindgen"
-version = "0.46.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f17a85883d4e6d00e8a97c586de764dabcc06133f7f1d55dce5cdc070ad7fe59"
-
 [[package]]
 name = "writeable"
 version = "0.6.3"
@@ -2008,26 +1918,6 @@ dependencies = [
  "synstructure",
 ]
 
-[[package]]
-name = "zerocopy"
-version = "0.8.52"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ce1022995ff5ff5d841ad7d994facc23098cd40152f2c1d11cd607c6f530653f"
-dependencies = [
- "zerocopy-derive",
-]
-
-[[package]]
-name = "zerocopy-derive"
-version = "0.8.52"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1ae7f38b72ec2a254e2b87ef277cf2cd4fb97cbebf944faa6f33354da0867930"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn",
-]
-
 [[package]]
 name = "zerofrom"
 version = "0.1.8"

{bibsync-0.4.1 → bibsync-0.4.3}/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "bibsync"
-version = "0.4.1"
+version = "0.4.3"
 edition = "2024"
 rust-version = "1.85"
 authors = ["Isaac C. F. Wong"]

{bibsync-0.4.1 → bibsync-0.4.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bibsync
-Version: 0.4.1
+Version: 0.4.3
 Classifier: Development Status :: 4 - Beta
 Classifier: Environment :: Console
 Classifier: Intended Audience :: Science/Research
@@ -134,9 +134,9 @@ For convenience, you can also use:
 @software{wong2026bibsync,
   author  = {Wong, Isaac C. F.},
   title   = {bibsync: A Rust package to automatically resolve, synchronize, and validate LaTeX citations across BibTeX databases},
-  version = {v0.4.1},
+  version = {v0.4.3},
   year    = {2026},
-  month   = jun,
+  month   = jul,
   doi     = {10.5281/zenodo.20422622},
   url     = {https://doi.org/10.5281/zenodo.20422622}
 }
@@ -281,12 +281,36 @@ provider and citekey or batch being resolved.
 The repository includes `.pre-commit-hooks.yaml`, so other projects can use
 `bibsync` as a pre-commit hook.
 
+Both hooks run on TeX (`.tex`), BibTeX (`.bib`), and Markdown (`.md`) files.
+Every `@key` in a scanned file is treated as a citation, so scanning unrelated
+Markdown can raise false positives — for example a `README.md` that uses GitHub
+`@mentions`. **The recommended setup is to scope the hook to your citation
+sources with `files:`** rather than relying on the default file matching.
+
+For a JOSS paper (`paper.md` + `paper.bib`):
+
+```yaml
+repos:
+    - repo: https://github.com/isaac-cf-wong/bibsync
+      rev: v0.4.3
+      hooks:
+          - id: bibsync-bin
+            files: ^paper\.md$
+            args: [--fix, --cache, --provider, inspire, --output, paper.bib]
+```
+
+The `--output` bibliography is read and written even when it is not itself
+matched by `files:`, so scoping to `paper.md` still keeps `paper.bib` in sync.
+
+The remaining examples below omit `files:` for brevity; add it to match your
+project layout.
+
 Use the pre-built binary hook for faster installs:
 
 ```yaml
 repos:
     - repo: https://github.com/isaac-cf-wong/bibsync
-      rev: v0.4.1
+      rev: v0.4.3
       hooks:
           - id: bibsync-bin
             args: [--cache, --provider, inspire, --output, references.bib]
@@ -301,7 +325,7 @@ installation:
 ```yaml
 repos:
     - repo: https://github.com/isaac-cf-wong/bibsync
-      rev: v0.4.1
+      rev: v0.4.3
       hooks:
           - id: bibsync
             args: [--provider, inspire, --output, references.bib]
@@ -313,7 +337,7 @@ writing changes. To let the hook update files, add `--fix` to the hook args:
 ```yaml
 repos:
     - repo: https://github.com/isaac-cf-wong/bibsync
-      rev: v0.4.1
+      rev: v0.4.3
       hooks:
           - id: bibsync-bin
             args: [--fix, --cache, --provider, inspire, --output, references.bib]
@@ -324,7 +348,7 @@ To skip manually curated entries, add `--ignore-file`:
 ```yaml
 repos:
     - repo: https://github.com/isaac-cf-wong/bibsync
-      rev: v0.4.1
+      rev: v0.4.3
       hooks:
           - id: bibsync-bin
             args:

{bibsync-0.4.1 → bibsync-0.4.3}/README.md

@@ -107,9 +107,9 @@ For convenience, you can also use:
 @software{wong2026bibsync,
   author  = {Wong, Isaac C. F.},
   title   = {bibsync: A Rust package to automatically resolve, synchronize, and validate LaTeX citations across BibTeX databases},
-  version = {v0.4.1},
+  version = {v0.4.3},
   year    = {2026},
-  month   = jun,
+  month   = jul,
   doi     = {10.5281/zenodo.20422622},
   url     = {https://doi.org/10.5281/zenodo.20422622}
 }
@@ -254,12 +254,36 @@ provider and citekey or batch being resolved.
 The repository includes `.pre-commit-hooks.yaml`, so other projects can use
 `bibsync` as a pre-commit hook.
 
+Both hooks run on TeX (`.tex`), BibTeX (`.bib`), and Markdown (`.md`) files.
+Every `@key` in a scanned file is treated as a citation, so scanning unrelated
+Markdown can raise false positives — for example a `README.md` that uses GitHub
+`@mentions`. **The recommended setup is to scope the hook to your citation
+sources with `files:`** rather than relying on the default file matching.
+
+For a JOSS paper (`paper.md` + `paper.bib`):
+
+```yaml
+repos:
+    - repo: https://github.com/isaac-cf-wong/bibsync
+      rev: v0.4.3
+      hooks:
+          - id: bibsync-bin
+            files: ^paper\.md$
+            args: [--fix, --cache, --provider, inspire, --output, paper.bib]
+```
+
+The `--output` bibliography is read and written even when it is not itself
+matched by `files:`, so scoping to `paper.md` still keeps `paper.bib` in sync.
+
+The remaining examples below omit `files:` for brevity; add it to match your
+project layout.
+
 Use the pre-built binary hook for faster installs:
 
 ```yaml
 repos:
     - repo: https://github.com/isaac-cf-wong/bibsync
-      rev: v0.4.1
+      rev: v0.4.3
       hooks:
           - id: bibsync-bin
             args: [--cache, --provider, inspire, --output, references.bib]
@@ -274,7 +298,7 @@ installation:
 ```yaml
 repos:
     - repo: https://github.com/isaac-cf-wong/bibsync
-      rev: v0.4.1
+      rev: v0.4.3
       hooks:
           - id: bibsync
             args: [--provider, inspire, --output, references.bib]
@@ -286,7 +310,7 @@ writing changes. To let the hook update files, add `--fix` to the hook args:
 ```yaml
 repos:
     - repo: https://github.com/isaac-cf-wong/bibsync
-      rev: v0.4.1
+      rev: v0.4.3
       hooks:
           - id: bibsync-bin
             args: [--fix, --cache, --provider, inspire, --output, references.bib]
@@ -297,7 +321,7 @@ To skip manually curated entries, add `--ignore-file`:
 ```yaml
 repos:
     - repo: https://github.com/isaac-cf-wong/bibsync
-      rev: v0.4.1
+      rev: v0.4.3
       hooks:
           - id: bibsync-bin
             args:

{bibsync-0.4.1 → bibsync-0.4.3}/pyproject.toml

@@ -26,7 +26,7 @@ classifiers = [
 dynamic = ["version"]
 
 [dependency-groups]
-dev = ["pytest>=9.1.1", "ruff>=0.15.20", "prek>=0.4.5"]
+dev = ["pytest>=9.1.1", "ruff>=0.15.20", "prek>=0.4.8"]
 build = ["maturin>=1.14.1,<2"]
 
 [project.urls]

{bibsync-0.4.1 → bibsync-0.4.3}/uv.lock

@@ -21,7 +21,7 @@ dev = [
 [package.metadata.requires-dev]
 build = [{ name = "maturin", specifier = ">=1.14.1,<2" }]
 dev = [
-    { name = "prek", specifier = ">=0.4.5" },
+    { name = "prek", specifier = ">=0.4.8" },
     { name = "pytest", specifier = ">=9.1.1" },
     { name = "ruff", specifier = ">=0.15.20" },
 ]
@@ -85,26 +85,26 @@ wheels = [
 
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+version = "0.4.8"
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 ]
 
 [[package]]

bibsync-0.4.1/.pre-commit-hooks.yaml

@@ -1,12 +0,0 @@
-- id: bibsync
-  name: bibsync
-  description: Synchronize BibTeX entries from TeX citation keys
-  entry: bibsync
-  language: rust
-  types_or: [tex, bib]
-- id: bibsync-bin
-  name: bibsync
-  description: Synchronize BibTeX entries using a pre-built release binary
-  entry: scripts/pre-commit-bibsync
-  language: script
-  types_or: [tex, bib]