bib2graph 0.1.0__tar.gz

bib2graph-0.1.0/LICENSE

@@ -0,0 +1,190 @@
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+
+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may choose to offer,
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bib2graph-0.1.0/PKG-INFO

@@ -0,0 +1,206 @@
+Metadata-Version: 2.1
+Name: bib2graph
+Version: 0.1.0
+Summary: A Python package for bibliometric data processing and network analysis
+Home-page: https://github.com/complexluise/bib2graph
+License: Apache-2.0
+Keywords: bibliometrics,network-analysis,citation-analysis,data-science,neo4j
+Author: Luis Eduardo Higuera Calderon
+Author-email: lhiguerac@unal.edu.co
+Maintainer: Luis Eduardo Higuera Calderon
+Maintainer-email: lhiguerac@unal.edu.co
+Requires-Python: >=3.12,<4.0
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Requires-Dist: bibtexparser (>=1.4.0,<2.0.0)
+Requires-Dist: crossrefapi (>=1.5.0,<2.0.0)
+Requires-Dist: elsapy (>=0.5.0,<0.6.0)
+Requires-Dist: lxml (>=5.4.0,<6.0.0)
+Requires-Dist: neomodel (>=5.4.5,<6.0.0)
+Requires-Dist: networkx (>=3.1,<4.0)
+Requires-Dist: pandas (>=2.0.0,<3.0.0)
+Requires-Dist: pys2 (>=1.1.0,<2.0.0)
+Requires-Dist: requests (>=2.31.0,<3.0.0)
+Project-URL: Documentation, https://github.com/complexluise/bib2graph
+Project-URL: Repository, https://github.com/complexluise/bib2graph
+Description-Content-Type: text/markdown
+
+
+# bib2graph
+
+Un paquete de Python para el procesamiento de datos bibliométricos y análisis de redes.
+
+[![PyPI version](https://img.shields.io/pypi/v/bib2graph.svg)](https://pypi.org/project/bib2graph/)
+[![License](https://img.shields.io/github/license/complexluise/bib2graph.svg)](https://github.com/complexluise/bib2graph/blob/main/LICENSE)
+[![Python Versions](https://img.shields.io/pypi/pyversions/bib2graph.svg)](https://pypi.org/project/bib2graph/)
+
+## Descripción
+
+`bib2graph` es un pipeline de datos completo para el análisis bibliométrico de publicaciones científicas. Transforma datos bibliográficos en representaciones de red para análisis avanzados. El pipeline consta de tres fases principales:
+
+1. **Ingesta de Datos**: Analiza y normaliza metadatos bibliográficos desde BibTeX y los carga en una base de datos de grafos Neo4j.
+
+2. **Enriquecimiento de Datos**: Consulta APIs externas (Semantic Scholar, CrossRef, Scopus) para obtener metadatos adicionales como citas, referencias completas, ORCIDs de autores e información de financiamiento.
+
+3. **Extracción de Redes**: Genera varias redes para análisis, incluyendo redes de co-citación, redes de colaboración entre autores, redes de colaboración institucional y redes de co-ocurrencia de palabras clave.
+
+## Arquitectura
+
+La arquitectura del sistema consta de tres módulos principales:
+
+1. **Módulo de Ingesta de Datos** (`consigue_los_articulos.py`): Responsable de cargar datos desde diferentes fuentes y normalizarlos para su almacenamiento en Neo4j.
+
+2. **Módulo de Enriquecimiento de Datos** (`enriquecimiento.py`): Consulta APIs externas para obtener metadatos adicionales y actualizar la base de datos.
+
+3. **Módulo de Análisis de Redes** (`analisis_red.py`): Extrae diferentes tipos de redes del grafo y las exporta para análisis posterior.
+
+## Requisitos
+
+- Python 3.12 o superior
+- Base de datos Neo4j (instalación local o en la nube)
+- Claves de API para servicios externos (opcional):
+  - API de Semantic Scholar
+  - API de Scopus
+
+## Instalación
+
+### Desde PyPI (Recomendado)
+
+```bash
+pip install bib2graph
+```
+
+### Desde el Código Fuente
+
+1. Clonar el repositorio:
+   ```bash
+   git clone https://github.com/complexluise/bib2graph.git
+   cd bib2graph
+   ```
+
+2. Instalar dependencias con Poetry:
+   ```bash
+   poetry install
+   ```
+
+### Configuración
+
+Configurar variables de entorno para las claves de API y la conexión a Neo4j (opcional):
+
+```bash
+# Para Linux/macOS
+export SEMANTIC_SCHOLAR_API_KEY="tu_clave_api"
+export SCOPUS_API_KEY="tu_clave_api"
+export NEO4J_URI="bolt://localhost:7687"
+export NEO4J_USER="neo4j"
+export NEO4J_PASSWORD="tu_contraseña"
+
+# Para Windows (PowerShell)
+$env:SEMANTIC_SCHOLAR_API_KEY="tu_clave_api"
+$env:SCOPUS_API_KEY="tu_clave_api"
+$env:NEO4J_URI="bolt://localhost:7687"
+$env:NEO4J_USER="neo4j"
+$env:NEO4J_PASSWORD="tu_contraseña"
+```
+
+## Uso
+
+El script principal proporciona una interfaz de línea de comandos para ejecutar el pipeline completo o fases individuales:
+
+### Ejecutar el pipeline completo:
+```bash
+bib2graph --mode full
+```
+
+### Ejecutar solo la fase de ingesta de datos:
+```bash
+bib2graph --mode ingest --input data/file.bib --file-type bibtex
+```
+
+### Ejecutar solo la fase de enriquecimiento de datos:
+```bash
+bib2graph --mode enrich
+```
+
+### Ejecutar solo la fase de análisis de redes:
+```bash
+bib2graph --mode analyze --network-type cocitation --output-dir results
+```
+
+### Opciones disponibles:
+```
+--mode              Modo de operación (ingest, enrich, analyze, full)
+--input             Archivo o directorio de entrada
+--file-type         Tipo de archivo (csv, bibtex, json)
+--network-type      Tipo de red (cocitation, author, institution, keyword)
+--min-weight        Peso mínimo para relaciones
+--output-dir        Directorio para archivos de salida
+--community-algorithm  Algoritmo de detección de comunidades (louvain, label_propagation, greedy_modularity)
+--neo4j-uri         URI de conexión a Neo4j
+--neo4j-user        Nombre de usuario de Neo4j
+--neo4j-password    Contraseña de Neo4j
+```
+
+## Ejemplos
+
+### Procesar un archivo BibTeX y generar una red de co-citación:
+```bash
+bib2graph --mode full --input data/references.bib --network-type cocitation --output-dir results
+```
+
+### Generar una red de colaboración entre autores:
+```bash
+bib2graph --mode analyze --network-type author --output-dir results
+```
+
+### Generar una red de co-ocurrencia de palabras clave:
+```bash
+bib2graph --mode analyze --network-type keyword --output-dir results
+```
+
+### Procesar un archivo CSV con un peso mínimo de arista de 2:
+```bash
+bib2graph --mode full --input data/citations.csv --file-type csv --network-type cocitation --min-weight 2 --output-dir results
+```
+
+## Estructura del Proyecto
+
+```
+bib2graph/
+├── data/                      # Directorio de datos de entrada
+│   └── references.bib         # Archivo BibTeX de ejemplo
+├── src/                       # Código fuente
+│   ├── consigue_los_articulos.py  # Módulo de ingesta de datos
+│   ├── enriquecimiento.py     # Módulo de enriquecimiento de datos
+│   ├── analisis_red.py        # Módulo de análisis de redes
+│   ├── models.py              # Modelos de datos
+│   └── queries.py             # Consultas a la base de datos
+├── results/                   # Resultados generados
+├── main.py                    # Script principal
+├── pyproject.toml             # Configuración de Poetry
+├── .github/                   # Flujos de trabajo de GitHub
+│   └── workflows/             # Flujos de trabajo de CI/CD
+└── README.md                  # Documentación
+```
+
+## Licencia
+
+Este proyecto está licenciado bajo la Licencia Apache 2.0 - consulte el archivo [LICENSE](LICENSE) para más detalles.
+
+## Contribuciones
+
+¡Las contribuciones son bienvenidas! No dude en enviar un Pull Request.
+
+## Cita
+
+Si utiliza bib2graph en su investigación, por favor cítelo como:
+
+```
+Higuera-Calderon, L. E. (2025). bib2graph: Un paquete de Python para el procesamiento de datos bibliométricos y análisis de redes. 
+https://github.com/complexluise/bib2graph
+```

bib2graph-0.1.0/README.md

@@ -0,0 +1,174 @@
+
+# bib2graph
+
+Un paquete de Python para el procesamiento de datos bibliométricos y análisis de redes.
+
+[![PyPI version](https://img.shields.io/pypi/v/bib2graph.svg)](https://pypi.org/project/bib2graph/)
+[![License](https://img.shields.io/github/license/complexluise/bib2graph.svg)](https://github.com/complexluise/bib2graph/blob/main/LICENSE)
+[![Python Versions](https://img.shields.io/pypi/pyversions/bib2graph.svg)](https://pypi.org/project/bib2graph/)
+
+## Descripción
+
+`bib2graph` es un pipeline de datos completo para el análisis bibliométrico de publicaciones científicas. Transforma datos bibliográficos en representaciones de red para análisis avanzados. El pipeline consta de tres fases principales:
+
+1. **Ingesta de Datos**: Analiza y normaliza metadatos bibliográficos desde BibTeX y los carga en una base de datos de grafos Neo4j.
+
+2. **Enriquecimiento de Datos**: Consulta APIs externas (Semantic Scholar, CrossRef, Scopus) para obtener metadatos adicionales como citas, referencias completas, ORCIDs de autores e información de financiamiento.
+
+3. **Extracción de Redes**: Genera varias redes para análisis, incluyendo redes de co-citación, redes de colaboración entre autores, redes de colaboración institucional y redes de co-ocurrencia de palabras clave.
+
+## Arquitectura
+
+La arquitectura del sistema consta de tres módulos principales:
+
+1. **Módulo de Ingesta de Datos** (`consigue_los_articulos.py`): Responsable de cargar datos desde diferentes fuentes y normalizarlos para su almacenamiento en Neo4j.
+
+2. **Módulo de Enriquecimiento de Datos** (`enriquecimiento.py`): Consulta APIs externas para obtener metadatos adicionales y actualizar la base de datos.
+
+3. **Módulo de Análisis de Redes** (`analisis_red.py`): Extrae diferentes tipos de redes del grafo y las exporta para análisis posterior.
+
+## Requisitos
+
+- Python 3.12 o superior
+- Base de datos Neo4j (instalación local o en la nube)
+- Claves de API para servicios externos (opcional):
+  - API de Semantic Scholar
+  - API de Scopus
+
+## Instalación
+
+### Desde PyPI (Recomendado)
+
+```bash
+pip install bib2graph
+```
+
+### Desde el Código Fuente
+
+1. Clonar el repositorio:
+   ```bash
+   git clone https://github.com/complexluise/bib2graph.git
+   cd bib2graph
+   ```
+
+2. Instalar dependencias con Poetry:
+   ```bash
+   poetry install
+   ```
+
+### Configuración
+
+Configurar variables de entorno para las claves de API y la conexión a Neo4j (opcional):
+
+```bash
+# Para Linux/macOS
+export SEMANTIC_SCHOLAR_API_KEY="tu_clave_api"
+export SCOPUS_API_KEY="tu_clave_api"
+export NEO4J_URI="bolt://localhost:7687"
+export NEO4J_USER="neo4j"
+export NEO4J_PASSWORD="tu_contraseña"
+
+# Para Windows (PowerShell)
+$env:SEMANTIC_SCHOLAR_API_KEY="tu_clave_api"
+$env:SCOPUS_API_KEY="tu_clave_api"
+$env:NEO4J_URI="bolt://localhost:7687"
+$env:NEO4J_USER="neo4j"
+$env:NEO4J_PASSWORD="tu_contraseña"
+```
+
+## Uso
+
+El script principal proporciona una interfaz de línea de comandos para ejecutar el pipeline completo o fases individuales:
+
+### Ejecutar el pipeline completo:
+```bash
+bib2graph --mode full
+```
+
+### Ejecutar solo la fase de ingesta de datos:
+```bash
+bib2graph --mode ingest --input data/file.bib --file-type bibtex
+```
+
+### Ejecutar solo la fase de enriquecimiento de datos:
+```bash
+bib2graph --mode enrich
+```
+
+### Ejecutar solo la fase de análisis de redes:
+```bash
+bib2graph --mode analyze --network-type cocitation --output-dir results
+```
+
+### Opciones disponibles:
+```
+--mode              Modo de operación (ingest, enrich, analyze, full)
+--input             Archivo o directorio de entrada
+--file-type         Tipo de archivo (csv, bibtex, json)
+--network-type      Tipo de red (cocitation, author, institution, keyword)
+--min-weight        Peso mínimo para relaciones
+--output-dir        Directorio para archivos de salida
+--community-algorithm  Algoritmo de detección de comunidades (louvain, label_propagation, greedy_modularity)
+--neo4j-uri         URI de conexión a Neo4j
+--neo4j-user        Nombre de usuario de Neo4j
+--neo4j-password    Contraseña de Neo4j
+```
+
+## Ejemplos
+
+### Procesar un archivo BibTeX y generar una red de co-citación:
+```bash
+bib2graph --mode full --input data/references.bib --network-type cocitation --output-dir results
+```
+
+### Generar una red de colaboración entre autores:
+```bash
+bib2graph --mode analyze --network-type author --output-dir results
+```
+
+### Generar una red de co-ocurrencia de palabras clave:
+```bash
+bib2graph --mode analyze --network-type keyword --output-dir results
+```
+
+### Procesar un archivo CSV con un peso mínimo de arista de 2:
+```bash
+bib2graph --mode full --input data/citations.csv --file-type csv --network-type cocitation --min-weight 2 --output-dir results
+```
+
+## Estructura del Proyecto
+
+```
+bib2graph/
+├── data/                      # Directorio de datos de entrada
+│   └── references.bib         # Archivo BibTeX de ejemplo
+├── src/                       # Código fuente
+│   ├── consigue_los_articulos.py  # Módulo de ingesta de datos
+│   ├── enriquecimiento.py     # Módulo de enriquecimiento de datos
+│   ├── analisis_red.py        # Módulo de análisis de redes
+│   ├── models.py              # Modelos de datos
+│   └── queries.py             # Consultas a la base de datos
+├── results/                   # Resultados generados
+├── main.py                    # Script principal
+├── pyproject.toml             # Configuración de Poetry
+├── .github/                   # Flujos de trabajo de GitHub
+│   └── workflows/             # Flujos de trabajo de CI/CD
+└── README.md                  # Documentación
+```
+
+## Licencia
+
+Este proyecto está licenciado bajo la Licencia Apache 2.0 - consulte el archivo [LICENSE](LICENSE) para más detalles.
+
+## Contribuciones
+
+¡Las contribuciones son bienvenidas! No dude en enviar un Pull Request.
+
+## Cita
+
+Si utiliza bib2graph en su investigación, por favor cítelo como:
+
+```
+Higuera-Calderon, L. E. (2025). bib2graph: Un paquete de Python para el procesamiento de datos bibliométricos y análisis de redes. 
+https://github.com/complexluise/bib2graph
+```

bib2graph-0.1.0/bib2graph/__init__.py

@@ -0,0 +1,20 @@
+"""
+bib2graph - A Python package for bibliometric data processing and network analysis.
+
+This package provides tools for:
+1. Ingesting bibliographic data from various sources
+2. Enriching data with additional metadata from external APIs
+3. Extracting and analyzing bibliometric networks
+
+Main components:
+- BibliometricDataLoader: For loading and normalizing bibliographic data
+- BibliometricDataEnricher: For enriching data with additional metadata
+- BibliometricNetworkAnalyzer: For extracting and analyzing networks
+"""
+
+from bib2graph.consigue_los_articulos import BibliometricDataLoader
+from bib2graph.enriquecimiento import BibliometricDataEnricher
+from bib2graph.analisis_red import BibliometricNetworkAnalyzer
+from bib2graph.models import *
+
+__version__ = "0.1.0"