bib-optimizer 0.3.5__tar.gz → 0.4.0__tar.gz

{bib_optimizer-0.3.5/src/bib_optimizer.egg-info → bib_optimizer-0.4.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bib_optimizer
-Version: 0.3.5
+Version: 0.4.0
 Summary: Clean and optimize bib file.
 Author-email: Ka Wa Yip <yipkawa@gmail.com>
 License: MIT License
@@ -53,7 +53,7 @@ Requires-Dist: pytest; extra == "dev"
 Dynamic: license-file
 
   <figure>
-    <img src="logo.png" alt="logo" height="143" />
+    <img src="https://github.com/kwyip/bib_optimizer/blob/main/logo.png?raw=True" alt="logo" height="143" />
     <!-- <figcaption>An elephant at sunset</figcaption> -->
   </figure>
 
@@ -122,21 +122,14 @@ _🐍 This requires Python 3.8 or newer versions_
 
 You may test the installation using the sample input files (`sample_main.tex` and `sample_ref.bib`) located in the test folder.
 
-<figure>
-  <img src="sample_main_shot.png" alt="sample_main_shot" height="199"/>
-  &nbsp;
-  <img src="sample_ref_shot.png" alt="sample_ref_shot" height="199" />
-  <figcaption>
-    <i><code>sample_main.tex</code> and <code>sample_ref.bib</code></i>
-  </figcaption>
-</figure>
-
-<figure>
-  <img src="sample_ref_opt_shot.png" alt="sample_ref_opt_shot" height="199" />
-  <figcaption>
-    <i>A sample <code>ref_opt.bib</code> after running 
-      <code>bibopt sample_main.tex sample_ref.bib ref_opt.bib</code></i>
-  </figcaption> 
-</figure>
+<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_main_shot.png?raw=True" alt="sample_main_shot" height="200"/>&nbsp;&nbsp;<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_ref_shot.png?raw=True" alt="sample_ref_shot" height="200" />
+
+_`sample_main.tex` and `sample_ref.bib`_
+
+<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_ref_opt_shot.png?raw=True" alt="sample_ref_opt_shot" height="200" />
+
+_A sample `ref_opt.bib` after running `bibopt sample_main.tex sample_ref.bib ref_opt.bib`_
+
+---
 
 ♥ Lastly executed on Python `3.10` on 2025-04-16.

{bib_optimizer-0.3.5 → bib_optimizer-0.4.0}/README.md

@@ -1,5 +1,5 @@
   <figure>
-    <img src="logo.png" alt="logo" height="143" />
+    <img src="https://github.com/kwyip/bib_optimizer/blob/main/logo.png?raw=True" alt="logo" height="143" />
     <!-- <figcaption>An elephant at sunset</figcaption> -->
   </figure>
 
@@ -68,21 +68,14 @@ _🐍 This requires Python 3.8 or newer versions_
 
 You may test the installation using the sample input files (`sample_main.tex` and `sample_ref.bib`) located in the test folder.
 
-<figure>
-  <img src="sample_main_shot.png" alt="sample_main_shot" height="199"/>
-  &nbsp;
-  <img src="sample_ref_shot.png" alt="sample_ref_shot" height="199" />
-  <figcaption>
-    <i><code>sample_main.tex</code> and <code>sample_ref.bib</code></i>
-  </figcaption>
-</figure>
-
-<figure>
-  <img src="sample_ref_opt_shot.png" alt="sample_ref_opt_shot" height="199" />
-  <figcaption>
-    <i>A sample <code>ref_opt.bib</code> after running 
-      <code>bibopt sample_main.tex sample_ref.bib ref_opt.bib</code></i>
-  </figcaption> 
-</figure>
+<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_main_shot.png?raw=True" alt="sample_main_shot" height="200"/>&nbsp;&nbsp;<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_ref_shot.png?raw=True" alt="sample_ref_shot" height="200" />
+
+_`sample_main.tex` and `sample_ref.bib`_
+
+<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_ref_opt_shot.png?raw=True" alt="sample_ref_opt_shot" height="200" />
+
+_A sample `ref_opt.bib` after running `bibopt sample_main.tex sample_ref.bib ref_opt.bib`_
+
+---
 
 ♥ Lastly executed on Python `3.10` on 2025-04-16.

{bib_optimizer-0.3.5 → bib_optimizer-0.4.0}/pyproject.toml

@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "bib_optimizer"
-version = "0.3.5"
+version = "0.4.0"
 description = "Clean and optimize bib file."
 authors = [
   { name="Ka Wa Yip", email="yipkawa@gmail.com" },
@@ -40,7 +40,7 @@ dev   = ["black", "bumpver", "isort", "mypy", "pytest"]
 bibopt = "bib_optimizer.__main__:main"
 
 [tool.bumpver]
-current_version = "0.3.5"
+current_version = "0.4.0"
 version_pattern = "MAJOR.MINOR.PATCH"
 commit_message  = "bump version {old_version} -> {new_version}"
 commit          = true

bib_optimizer-0.4.0/src/bib_optimizer/__init__.py

@@ -0,0 +1,2 @@
+# Version
+__version__ = "0.4.0"

{bib_optimizer-0.3.5 → bib_optimizer-0.4.0}/src/bib_optimizer/__main__.py

@@ -1,7 +1,7 @@
 """Version:
 --------
 
-- bib_optimizer v0.3.5
+- bib_optimizer v0.4.0
 """
 import sys
 from bib_optimizer import helpers

bib_optimizer-0.4.0/src/bib_optimizer/helpers.py

@@ -0,0 +1,68 @@
+import bibtexparser
+import re
+from bibtexparser.bwriter import BibTexWriter
+
+def _augment_func(filecontent, all_keys, temp_citations):
+    for e in re.findall(r'\\cite[tp]?\{([^}]+)\}', filecontent):
+        for c in e.split(','):  
+            c = c.strip()
+            if c not in temp_citations:
+                all_keys.append(c)
+                temp_citations.add(c)
+                
+    return all_keys, temp_citations
+                
+def bib_opt(filename, input_bib, output_bib):
+    with open(filename, 'r', encoding='utf-8') as file:
+        lines = file.readlines()
+    filtered_lines = [line for line in lines if not line.lstrip().startswith('%')]
+    filecontent = ''.join(filtered_lines)
+    
+    with open(input_bib, 'r', encoding='utf-8') as bibfile:
+        bib_database = bibtexparser.load(bibfile)
+
+    allowed_keys = []
+    all_keys = []
+    temp_citations = set()
+    
+    split_pattern = r'(.*?)(\\input[^\n]*\n)(.*?)((?=\\input)|\Z)'
+    matches = re.findall(split_pattern, filecontent, flags=re.DOTALL)
+    split_results = [(before, after.strip()) for before, input_line, after, _ in matches]
+    
+    input_pattern_extended = r'\\input\s*(?:{([^}]+)}|([^\s\n]+))'
+    matches = re.findall(input_pattern_extended, filecontent)
+    input_files_extended = [m[0] if m[0] else m[1] for m in matches]    
+
+    if not split_results:
+        all_keys, temp_citations = _augment_func(filecontent, all_keys, temp_citations)
+    else:
+        for split_result, input_file_extended in zip(split_results, input_files_extended):
+            all_keys, temp_citations = _augment_func(split_result[0], all_keys, temp_citations)
+            
+            if ".tex" not in input_file_extended:
+                input_file_extended += ".tex"
+            
+            with open(input_file_extended, 'r', encoding='utf-8') as file:
+                _lines = file.readlines()
+
+            _filtered_lines = [line for line in _lines if not line.lstrip().startswith('%')]
+            _filecontent = ''.join(_filtered_lines)     
+
+            all_keys, temp_citations = _augment_func(_filecontent, all_keys, temp_citations)
+            all_keys, temp_citations = _augment_func(split_result[1], all_keys, temp_citations)
+
+    for k in all_keys:
+        allowed_keys.append(k)
+    
+    entry_dict = {entry.get('ID'): entry for entry in bib_database.entries}
+    filtered_entries = [entry_dict[key] for key in allowed_keys if key in entry_dict]
+
+    writer = BibTexWriter()
+    writer.indent = '    '  
+    writer.order_entries_by = None  
+
+    new_bib_database = bibtexparser.bibdatabase.BibDatabase()
+    new_bib_database.entries = filtered_entries
+
+    with open(output_bib, 'w', encoding='utf-8') as bibfile:
+        bibfile.write(writer.write(new_bib_database))

{bib_optimizer-0.3.5 → bib_optimizer-0.4.0/src/bib_optimizer.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bib_optimizer
-Version: 0.3.5
+Version: 0.4.0
 Summary: Clean and optimize bib file.
 Author-email: Ka Wa Yip <yipkawa@gmail.com>
 License: MIT License
@@ -53,7 +53,7 @@ Requires-Dist: pytest; extra == "dev"
 Dynamic: license-file
 
   <figure>
-    <img src="logo.png" alt="logo" height="143" />
+    <img src="https://github.com/kwyip/bib_optimizer/blob/main/logo.png?raw=True" alt="logo" height="143" />
     <!-- <figcaption>An elephant at sunset</figcaption> -->
   </figure>
 
@@ -122,21 +122,14 @@ _🐍 This requires Python 3.8 or newer versions_
 
 You may test the installation using the sample input files (`sample_main.tex` and `sample_ref.bib`) located in the test folder.
 
-<figure>
-  <img src="sample_main_shot.png" alt="sample_main_shot" height="199"/>
-  &nbsp;
-  <img src="sample_ref_shot.png" alt="sample_ref_shot" height="199" />
-  <figcaption>
-    <i><code>sample_main.tex</code> and <code>sample_ref.bib</code></i>
-  </figcaption>
-</figure>
-
-<figure>
-  <img src="sample_ref_opt_shot.png" alt="sample_ref_opt_shot" height="199" />
-  <figcaption>
-    <i>A sample <code>ref_opt.bib</code> after running 
-      <code>bibopt sample_main.tex sample_ref.bib ref_opt.bib</code></i>
-  </figcaption> 
-</figure>
+<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_main_shot.png?raw=True" alt="sample_main_shot" height="200"/>&nbsp;&nbsp;<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_ref_shot.png?raw=True" alt="sample_ref_shot" height="200" />
+
+_`sample_main.tex` and `sample_ref.bib`_
+
+<img src="https://github.com/kwyip/bib_optimizer/blob/main/sample_ref_opt_shot.png?raw=True" alt="sample_ref_opt_shot" height="200" />
+
+_A sample `ref_opt.bib` after running `bibopt sample_main.tex sample_ref.bib ref_opt.bib`_
+
+---
 
 ♥ Lastly executed on Python `3.10` on 2025-04-16.

{bib_optimizer-0.3.5 → bib_optimizer-0.4.0}/src/bib_optimizer.egg-info/SOURCES.txt

@@ -5,6 +5,7 @@ pyproject.toml
 src/bib_optimizer/__init__.py
 src/bib_optimizer/__main__.py
 src/bib_optimizer/helpers.py
+src/bib_optimizer/helpers_old.py
 src/bib_optimizer.egg-info/PKG-INFO
 src/bib_optimizer.egg-info/SOURCES.txt
 src/bib_optimizer.egg-info/dependency_links.txt

bib_optimizer-0.3.5/src/bib_optimizer/__init__.py

@@ -1,2 +0,0 @@
-# Version
-__version__ = "0.3.5"