bge-python-sdk 0.7.0__tar.gz → 1.0.0__tar.gz

bge-python-sdk-1.0.0/PKG-INFO

@@ -0,0 +1,185 @@
+Metadata-Version: 2.1
+Name: bge-python-sdk
+Version: 1.0.0
+Summary: 可用于调用 BGE 开放平台的相关接口。
+Home-page: https://github.com/teambge/bge-python-sdk
+Author: leafcoder,xiangji1204
+Author-email: leafcoder@gmail.com,xiangji1204@genomics.cn
+Maintainer: leafcoder
+Maintainer-email: leafcoder@gmail.com
+License: MIT
+Keywords: bge-python-sdk bge bgesdk sdk
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Natural Language :: Chinese (Simplified)
+Classifier: Operating System :: OS Independent
+Classifier: Operating System :: Microsoft :: Windows :: Windows 10
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Software Development :: Libraries
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Topic :: Utilities
+Requires-Python: >=3.6.3
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: aliyun-python-sdk-core
+Requires-Dist: six
+Requires-Dist: certifi
+Requires-Dist: chardet
+Requires-Dist: idna
+Requires-Dist: requests
+Requires-Dist: urllib3
+Requires-Dist: oss2
+Requires-Dist: docker
+Requires-Dist: pimento
+Requires-Dist: qprompt
+Requires-Dist: requests_toolbelt
+Requires-Dist: validator.py
+Requires-Dist: python-minifier
+Requires-Dist: rich
+
+
+<div align="center">
+
+# BGE 开放平台 SDK - Python 版
+
+
+<p>
+    <!-- Place this tag where you want the button to render. -->
+    <a class="github-button" href="https://github.com/teambge/bge-python-sdk/subscription" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Watch teambge/bge-python-sdk on GitHub">
+        <img alt="GitHub forks" src="https://img.shields.io/github/watchers/teambge/bge-python-sdk?style=social">
+    </a>
+    <a class="github-button" href="https://github.com/teambge/bge-python-sdk" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Star teambge/bge-python-sdk on GitHub">
+        <img alt="GitHub forks" src="https://img.shields.io/github/stars/teambge/bge-python-sdk?style=social">
+    </a>
+    <a class="github-button" href="https://github.com/teambge/bge-python-sdk/fork" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Fork teambge/bge-python-sdk on GitHub">
+        <img alt="GitHub forks" src="https://img.shields.io/github/forks/teambge/bge-python-sdk?style=social">
+    </a>
+</p>
+
+<p>
+    <img src="https://img.shields.io/github/v/release/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/v/release/teambge/bge-python-sdk" alt="GitHub release (latest by date)">
+    <img src="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" alt="GitHub top language">
+    <img src="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" alt="GitHub code size in bytes">
+    <img src="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" alt="GitHub commit activity">
+    <img src="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" data-origin="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" alt="PyPI - Downloads">
+</p>
+
+<pre>
+    ____  ____________   ______  __________  ______  _   __   _____ ____  __ __
+   / __ )/ ____/ ____/  / __ \ \/ /_  __/ / / / __ \/ | / /  / ___// __ \/ //_/
+  / __  / / __/ __/    / /_/ /\  / / / / /_/ / / / /  |/ /   \__ \/ / / / ,<   
+ / /_/ / /_/ / /___   / ____/ / / / / / __  / /_/ / /|  /   ___/ / /_/ / /| |  
+/_____/\____/_____/  /_/     /_/ /_/ /_/ /_/\____/_/ |_/   /____/_____/_/ |_| 
+</pre>
+
+</div>
+
+BGE 开放平台 是一个跨越多级数据的（多）组学数据平台，开发者在获得用户授权后，将可以通过开放平台提供的 API 访问关联用户的（多）组学数据，甚至写入数据。
+
+基于开放平台 API，开发者可避免重复开发采样、提取、测序和生信分析等繁复的流程，直接使用清洁的结构化数据。
+
+开发者可以通过开放平台提供的 API 创建极具创意性的（多）组学应用，如：
+
+* 包含药物代谢或药物服用建议的应用
+* 包含体检数据和营养代谢基因的餐饮应用
+* 包含肠道菌群数据和痛风相关基因的痛风管理应用
+* 基于祖源成分的社交网络应用，等等
+
+BGE 开放平台 API 基于 OAuth 2.0 开发，并使用 SSL/TLS 加密传输，确保用户数据正确无误地授权，并安全地传输到第三方应用，确保用户数据不会被未经授权的应用获得。
+
+# 安装
+
+推荐使用 pip 进行安装。
+
+```shell
+$ pip install -U bge-python-sdk
+```
+
+或者
+
+```shell
+$ make install
+```
+
+再或者
+
+```shell
+$ python setup.py install
+```
+
+# SDK 文档
+
+更加详细的 SDK 文档请查看 [SDK Documents](https://api.bge.genomics.cn/doc/#/sdk/README)。
+
+# 快速开始
+
+BGE 开放平台支持 OAuth2 的两种模式，分别是用户授权模式、客户端模式。
+
+详情请参考开放平台文档 [https://api.bge.genomics.cn/doc](https://api.bge.genomics.cn/doc) 。
+
+## ENDPOINTS
+
+BGE 开放平台提供了如下可用的 `endpoint`。
+
+| endpoint                    | 解释                                                        |
+| --------------------------- | ----------------------------------------------------------- |
+| https://api.bge.genomics.cn | **线上环境** 主域名地址                                     |
+| https://api.bge.omgut.com   | **线上环境** 副域名地址，主域名地址不可用时可替换此域名地址 |
+
+## 授权码模式
+
+```python
+from bgesdk import OAuth2, API
+
+code = '???????'  # 用户确认授权后平台返回的授权码
+client_id = 'demo'
+client_secret = 'demo'
+redirect_uri = 'http://test.cn'
+oauth2 = OAuth2(
+    client_id, client_secret,
+    endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
+    verbose=False)
+token = oauth2.exchange_authorization_code(code, redirect_uri)
+
+api = oauth2.get_api(token.access_token)
+print(api.get_user())
+
+api = API(token.access_token)
+print(api.get_user())
+```
+
+## 客户端模式
+
+```python
+from bgesdk import OAuth2, API
+
+client_id = 'demo'
+client_secret = 'demo'
+oauth2 = OAuth2(
+    client_id, client_secret,
+    endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
+    verbose=False)
+token = oauth2.get_credentials_token()
+
+api = oauth2.get_api(token.access_token)
+print(api.get_variants('E-B1243433', 'rs333'))
+
+api = API(token.access_token)
+print(api.get_variants('E-B1243433', 'rs333'))
+```
+
+# Contributors
+
+* xiangji1204's [github](https://github.com/xiangji1204)
+* leafcoder(leafcoder@gmail.com)'s [github](https://github.com/leafcoder)

bge-python-sdk-1.0.0/bge_python_sdk.egg-info/PKG-INFO

@@ -0,0 +1,185 @@
+Metadata-Version: 2.1
+Name: bge-python-sdk
+Version: 1.0.0
+Summary: 可用于调用 BGE 开放平台的相关接口。
+Home-page: https://github.com/teambge/bge-python-sdk
+Author: leafcoder,xiangji1204
+Author-email: leafcoder@gmail.com,xiangji1204@genomics.cn
+Maintainer: leafcoder
+Maintainer-email: leafcoder@gmail.com
+License: MIT
+Keywords: bge-python-sdk bge bgesdk sdk
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Natural Language :: Chinese (Simplified)
+Classifier: Operating System :: OS Independent
+Classifier: Operating System :: Microsoft :: Windows :: Windows 10
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Software Development :: Libraries
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Topic :: Utilities
+Requires-Python: >=3.6.3
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: aliyun-python-sdk-core
+Requires-Dist: six
+Requires-Dist: certifi
+Requires-Dist: chardet
+Requires-Dist: idna
+Requires-Dist: requests
+Requires-Dist: urllib3
+Requires-Dist: oss2
+Requires-Dist: docker
+Requires-Dist: pimento
+Requires-Dist: qprompt
+Requires-Dist: requests_toolbelt
+Requires-Dist: validator.py
+Requires-Dist: python-minifier
+Requires-Dist: rich
+
+
+<div align="center">
+
+# BGE 开放平台 SDK - Python 版
+
+
+<p>
+    <!-- Place this tag where you want the button to render. -->
+    <a class="github-button" href="https://github.com/teambge/bge-python-sdk/subscription" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Watch teambge/bge-python-sdk on GitHub">
+        <img alt="GitHub forks" src="https://img.shields.io/github/watchers/teambge/bge-python-sdk?style=social">
+    </a>
+    <a class="github-button" href="https://github.com/teambge/bge-python-sdk" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Star teambge/bge-python-sdk on GitHub">
+        <img alt="GitHub forks" src="https://img.shields.io/github/stars/teambge/bge-python-sdk?style=social">
+    </a>
+    <a class="github-button" href="https://github.com/teambge/bge-python-sdk/fork" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Fork teambge/bge-python-sdk on GitHub">
+        <img alt="GitHub forks" src="https://img.shields.io/github/forks/teambge/bge-python-sdk?style=social">
+    </a>
+</p>
+
+<p>
+    <img src="https://img.shields.io/github/v/release/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/v/release/teambge/bge-python-sdk" alt="GitHub release (latest by date)">
+    <img src="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" alt="GitHub top language">
+    <img src="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" alt="GitHub code size in bytes">
+    <img src="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" alt="GitHub commit activity">
+    <img src="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" data-origin="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" alt="PyPI - Downloads">
+</p>
+
+<pre>
+    ____  ____________   ______  __________  ______  _   __   _____ ____  __ __
+   / __ )/ ____/ ____/  / __ \ \/ /_  __/ / / / __ \/ | / /  / ___// __ \/ //_/
+  / __  / / __/ __/    / /_/ /\  / / / / /_/ / / / /  |/ /   \__ \/ / / / ,<   
+ / /_/ / /_/ / /___   / ____/ / / / / / __  / /_/ / /|  /   ___/ / /_/ / /| |  
+/_____/\____/_____/  /_/     /_/ /_/ /_/ /_/\____/_/ |_/   /____/_____/_/ |_| 
+</pre>
+
+</div>
+
+BGE 开放平台 是一个跨越多级数据的（多）组学数据平台，开发者在获得用户授权后，将可以通过开放平台提供的 API 访问关联用户的（多）组学数据，甚至写入数据。
+
+基于开放平台 API，开发者可避免重复开发采样、提取、测序和生信分析等繁复的流程，直接使用清洁的结构化数据。
+
+开发者可以通过开放平台提供的 API 创建极具创意性的（多）组学应用，如：
+
+* 包含药物代谢或药物服用建议的应用
+* 包含体检数据和营养代谢基因的餐饮应用
+* 包含肠道菌群数据和痛风相关基因的痛风管理应用
+* 基于祖源成分的社交网络应用，等等
+
+BGE 开放平台 API 基于 OAuth 2.0 开发，并使用 SSL/TLS 加密传输，确保用户数据正确无误地授权，并安全地传输到第三方应用，确保用户数据不会被未经授权的应用获得。
+
+# 安装
+
+推荐使用 pip 进行安装。
+
+```shell
+$ pip install -U bge-python-sdk
+```
+
+或者
+
+```shell
+$ make install
+```
+
+再或者
+
+```shell
+$ python setup.py install
+```
+
+# SDK 文档
+
+更加详细的 SDK 文档请查看 [SDK Documents](https://api.bge.genomics.cn/doc/#/sdk/README)。
+
+# 快速开始
+
+BGE 开放平台支持 OAuth2 的两种模式，分别是用户授权模式、客户端模式。
+
+详情请参考开放平台文档 [https://api.bge.genomics.cn/doc](https://api.bge.genomics.cn/doc) 。
+
+## ENDPOINTS
+
+BGE 开放平台提供了如下可用的 `endpoint`。
+
+| endpoint                    | 解释                                                        |
+| --------------------------- | ----------------------------------------------------------- |
+| https://api.bge.genomics.cn | **线上环境** 主域名地址                                     |
+| https://api.bge.omgut.com   | **线上环境** 副域名地址，主域名地址不可用时可替换此域名地址 |
+
+## 授权码模式
+
+```python
+from bgesdk import OAuth2, API
+
+code = '???????'  # 用户确认授权后平台返回的授权码
+client_id = 'demo'
+client_secret = 'demo'
+redirect_uri = 'http://test.cn'
+oauth2 = OAuth2(
+    client_id, client_secret,
+    endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
+    verbose=False)
+token = oauth2.exchange_authorization_code(code, redirect_uri)
+
+api = oauth2.get_api(token.access_token)
+print(api.get_user())
+
+api = API(token.access_token)
+print(api.get_user())
+```
+
+## 客户端模式
+
+```python
+from bgesdk import OAuth2, API
+
+client_id = 'demo'
+client_secret = 'demo'
+oauth2 = OAuth2(
+    client_id, client_secret,
+    endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
+    verbose=False)
+token = oauth2.get_credentials_token()
+
+api = oauth2.get_api(token.access_token)
+print(api.get_variants('E-B1243433', 'rs333'))
+
+api = API(token.access_token)
+print(api.get_variants('E-B1243433', 'rs333'))
+```
+
+# Contributors
+
+* xiangji1204's [github](https://github.com/xiangji1204)
+* leafcoder(leafcoder@gmail.com)'s [github](https://github.com/leafcoder)

{bge-python-sdk-0.7.0 → bge-python-sdk-1.0.0}/bge_python_sdk.egg-info/SOURCES.txt

@@ -63,4 +63,5 @@ tests/test_oauth2.py
 tests/test_phenotype.py
 tests/test_samples.py
 tests/test_user.py
-tests/test_variants.py
+tests/test_variants.py
+tests/test_wgs.py

{bge-python-sdk-0.7.0 → bge-python-sdk-1.0.0}/bge_python_sdk.egg-info/entry_points.txt

@@ -1,3 +1,2 @@
 [console_scripts]
 bge = bgesdk.__main__:main
-