bge-python-sdk 0.6.1__tar.gz → 0.6.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (65) hide show
  1. bge-python-sdk-0.6.2/PKG-INFO +182 -0
  2. bge-python-sdk-0.6.2/bge_python_sdk.egg-info/PKG-INFO +182 -0
  3. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bge_python_sdk.egg-info/entry_points.txt +0 -1
  4. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/client.py +24 -12
  5. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/version.py +1 -1
  6. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/setup.cfg +1 -1
  7. bge-python-sdk-0.6.1/PKG-INFO +0 -167
  8. bge-python-sdk-0.6.1/bge_python_sdk.egg-info/PKG-INFO +0 -167
  9. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/LICENSE +0 -0
  10. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/MANIFEST.in +0 -0
  11. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/README.md +0 -0
  12. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bge_python_sdk.egg-info/SOURCES.txt +0 -0
  13. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bge_python_sdk.egg-info/dependency_links.txt +0 -0
  14. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bge_python_sdk.egg-info/requires.txt +0 -0
  15. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bge_python_sdk.egg-info/top_level.txt +0 -0
  16. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/__init__.py +0 -0
  17. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/__main__.py +0 -0
  18. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/constants.py +0 -0
  19. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/error.py +0 -0
  20. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/fs.py +0 -0
  21. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/http.py +0 -0
  22. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/__init__.py +0 -0
  23. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/command.py +0 -0
  24. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/__init__.py +0 -0
  25. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/__init__.py +0 -0
  26. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/__init__.py +0 -0
  27. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/aggregate_omics_data.py +0 -0
  28. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/download.py +0 -0
  29. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_data_items.py +0 -0
  30. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_externals.py +0 -0
  31. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_func_abundance.py +0 -0
  32. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_gene_abundance.py +0 -0
  33. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_range_stream.py +0 -0
  34. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_samples.py +0 -0
  35. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_taxon_abundance.py +0 -0
  36. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_user.py +0 -0
  37. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/get_variants.py +0 -0
  38. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/task.py +0 -0
  39. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/upload.py +0 -0
  40. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/api/commands/upload_dir.py +0 -0
  41. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/config.py +0 -0
  42. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/login.py +0 -0
  43. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/model.py +0 -0
  44. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/model_doc.py +0 -0
  45. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/token.py +0 -0
  46. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/commands/workon.py +0 -0
  47. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/constants.py +0 -0
  48. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/utils.py +0 -0
  49. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/management/validate.py +0 -0
  50. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/models.py +0 -0
  51. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/bgesdk/utils.py +0 -0
  52. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/pytest.ini +0 -0
  53. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/requirements.txt +0 -0
  54. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/setup.py +0 -0
  55. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/__init__.py +0 -0
  56. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/conftest.py +0 -0
  57. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_abundance.py +0 -0
  58. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_fs.py +0 -0
  59. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_model.py +0 -0
  60. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_models.py +0 -0
  61. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_oauth2.py +0 -0
  62. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_phenotype.py +0 -0
  63. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_samples.py +0 -0
  64. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_user.py +0 -0
  65. {bge-python-sdk-0.6.1 → bge-python-sdk-0.6.2}/tests/test_variants.py +0 -0
@@ -0,0 +1,182 @@
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+ Metadata-Version: 2.1
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+ Name: bge-python-sdk
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+ Version: 0.6.2
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+ Summary: 可用于调用 BGE 开放平台的相关接口。
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+ Home-page: https://github.com/teambge/bge-python-sdk
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+ Author: leafcoder,xiangji1204
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+ Author-email: leafcoder@gmail.com,xiangji1204@genomics.cn
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+ Maintainer: leafcoder
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+ Maintainer-email: leafcoder@gmail.com
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+ License: MIT
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+ Keywords: bge-python-sdk bge bgesdk sdk
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+ Classifier: Development Status :: 5 - Production/Stable
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+ Classifier: Intended Audience :: Developers
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+ Classifier: License :: OSI Approved :: MIT License
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+ Classifier: Natural Language :: Chinese (Simplified)
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Operating System :: Microsoft :: Windows :: Windows 10
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+ Classifier: Operating System :: POSIX :: Linux
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+ Classifier: Programming Language :: Python
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3.6
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+ Classifier: Programming Language :: Python :: 3.7
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+ Classifier: Programming Language :: Python :: 3.8
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+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Topic :: Software Development :: Libraries
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+ Classifier: Topic :: Software Development :: Libraries :: Python Modules
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+ Classifier: Topic :: Utilities
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+ Requires-Python: >=3.6.3
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: aliyun-python-sdk-core
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+ Requires-Dist: six
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+ Requires-Dist: certifi
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+ Requires-Dist: chardet
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+ Requires-Dist: idna
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+ Requires-Dist: requests
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+ Requires-Dist: urllib3
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+ Requires-Dist: oss2
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+ Requires-Dist: docker
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+ Requires-Dist: pimento
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+ Requires-Dist: qprompt
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+ Requires-Dist: requests_toolbelt
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+ Requires-Dist: validator.py
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+ Requires-Dist: python-minifier
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+ Requires-Dist: rich
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+
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+
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+ <div align="center">
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+
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+ # BGE 开放平台 SDK - Python 版
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+
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+
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+ <p>
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+ <!-- Place this tag where you want the button to render. -->
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+ <a class="github-button" href="https://github.com/teambge/bge-python-sdk/subscription" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Watch teambge/bge-python-sdk on GitHub">
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+ <img alt="GitHub forks" src="https://img.shields.io/github/watchers/teambge/bge-python-sdk?style=social">
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+ </a>
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+ <a class="github-button" href="https://github.com/teambge/bge-python-sdk" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Star teambge/bge-python-sdk on GitHub">
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+ <img alt="GitHub forks" src="https://img.shields.io/github/stars/teambge/bge-python-sdk?style=social">
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+ </a>
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+ <a class="github-button" href="https://github.com/teambge/bge-python-sdk/fork" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Fork teambge/bge-python-sdk on GitHub">
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+ <img alt="GitHub forks" src="https://img.shields.io/github/forks/teambge/bge-python-sdk?style=social">
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+ </a>
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+ </p>
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+
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+ <p>
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+ <img src="https://img.shields.io/github/v/release/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/v/release/teambge/bge-python-sdk" alt="GitHub release (latest by date)">
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+ <img src="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" alt="GitHub top language">
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+ <img src="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" alt="GitHub code size in bytes">
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+ <img src="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" alt="GitHub commit activity">
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+ <img src="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" data-origin="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" alt="PyPI - Downloads">
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+ </p>
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+
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+ <pre>
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+ ____ ____________ ______ __________ ______ _ __ _____ ____ __ __
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+ / __ )/ ____/ ____/ / __ \ \/ /_ __/ / / / __ \/ | / / / ___// __ \/ //_/
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+ / __ / / __/ __/ / /_/ /\ / / / / /_/ / / / / |/ / \__ \/ / / / ,<
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+ / /_/ / /_/ / /___ / ____/ / / / / / __ / /_/ / /| / ___/ / /_/ / /| |
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+ /_____/\____/_____/ /_/ /_/ /_/ /_/ /_/\____/_/ |_/ /____/_____/_/ |_|
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+ </pre>
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+
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+ </div>
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+
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+ BGE 开放平台 是一个跨越多级数据的(多)组学数据平台,开发者在获得用户授权后,将可以通过开放平台提供的 API 访问关联用户的(多)组学数据,甚至写入数据。
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+
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+ 基于开放平台 API,开发者可避免重复开发采样、提取、测序和生信分析等繁复的流程,直接使用清洁的结构化数据。
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+
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+ 开发者可以通过开放平台提供的 API 创建极具创意性的(多)组学应用,如:
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+
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+ * 包含药物代谢或药物服用建议的应用
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+ * 包含体检数据和营养代谢基因的餐饮应用
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+ * 包含肠道菌群数据和痛风相关基因的痛风管理应用
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+ * 基于祖源成分的社交网络应用,等等
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+
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+ BGE 开放平台 API 基于 OAuth 2.0 开发,并使用 SSL/TLS 加密传输,确保用户数据正确无误地授权,并安全地传输到第三方应用,确保用户数据不会被未经授权的应用获得。
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+
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+ # 安装
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+
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+ 推荐使用 pip 进行安装。
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+
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+ ```shell
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+ $ pip install -U bge-python-sdk
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+ ```
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+
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+ 或者
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+
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+ ```shell
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+ $ make install
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+ ```
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+
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+ 再或者
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+
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+ ```shell
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+ $ python setup.py install
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+ ```
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+
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+ # SDK 文档
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+
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+ 更加详细的 SDK 文档请查看 [SDK Documents](https://api.bge.genomics.cn/doc/#/sdk/README)。
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+
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+ # 快速开始
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+
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+ BGE 开放平台支持 OAuth2 的两种模式,分别是用户授权模式、客户端模式。
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+
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+ 详情请参考开放平台文档 [https://api.bge.genomics.cn/doc](https://api.bge.genomics.cn/doc) 。
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+
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+ ## ENDPOINTS
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+
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+ BGE 开放平台提供了如下可用的 `endpoint`。
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+
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+ | endpoint | 解释 |
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+ | --------------------------- | ----------------------------------------------------------- |
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+ | https://api.bge.genomics.cn | **线上环境** 主域名地址 |
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+ | https://api.bge.omgut.com | **线上环境** 副域名地址,主域名地址不可用时可替换此域名地址 |
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+
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+ ## 授权码模式
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+
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+ ```python
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+ from bgesdk import OAuth2, API
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+
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+ code = '???????' # 用户确认授权后平台返回的授权码
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+ client_id = 'demo'
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+ client_secret = 'demo'
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+ redirect_uri = 'http://test.cn'
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+ oauth2 = OAuth2(
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+ client_id, client_secret,
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+ endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
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+ verbose=False)
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+ token = oauth2.exchange_authorization_code(code, redirect_uri)
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+
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+ api = oauth2.get_api(token.access_token)
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+ print(api.get_user())
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+
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+ api = API(token.access_token)
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+ print(api.get_user())
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+ ```
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+
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+ ## 客户端模式
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+
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+ ```python
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+ from bgesdk import OAuth2, API
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+
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+ client_id = 'demo'
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+ client_secret = 'demo'
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+ oauth2 = OAuth2(
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+ client_id, client_secret,
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+ endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
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+ verbose=False)
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+ token = oauth2.get_credentials_token()
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+
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+ api = oauth2.get_api(token.access_token)
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+ print(api.get_variants('E-B1243433', 'rs333'))
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+
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+ api = API(token.access_token)
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+ print(api.get_variants('E-B1243433', 'rs333'))
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+ ```
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+
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+ # Contributors
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+
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+ * xiangji1204's [github](https://github.com/xiangji1204)
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+ * leafcoder(leafcoder@gmail.com)'s [github](https://github.com/leafcoder)
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+ Metadata-Version: 2.1
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+ Name: bge-python-sdk
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+ Version: 0.6.2
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+ Summary: 可用于调用 BGE 开放平台的相关接口。
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+ Home-page: https://github.com/teambge/bge-python-sdk
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+ Author: leafcoder,xiangji1204
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+ Author-email: leafcoder@gmail.com,xiangji1204@genomics.cn
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+ Maintainer: leafcoder
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+ Maintainer-email: leafcoder@gmail.com
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+ License: MIT
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+ Keywords: bge-python-sdk bge bgesdk sdk
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+ Classifier: Development Status :: 5 - Production/Stable
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+ Classifier: Intended Audience :: Developers
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+ Classifier: License :: OSI Approved :: MIT License
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+ Classifier: Natural Language :: Chinese (Simplified)
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Operating System :: Microsoft :: Windows :: Windows 10
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+ Classifier: Operating System :: POSIX :: Linux
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+ Classifier: Programming Language :: Python
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3.6
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+ Classifier: Programming Language :: Python :: 3.7
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+ Classifier: Programming Language :: Python :: 3.8
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+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Topic :: Software Development :: Libraries
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+ Classifier: Topic :: Software Development :: Libraries :: Python Modules
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+ Classifier: Topic :: Utilities
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+ Requires-Python: >=3.6.3
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: aliyun-python-sdk-core
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+ Requires-Dist: six
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+ Requires-Dist: certifi
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+ Requires-Dist: chardet
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+ Requires-Dist: idna
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+ Requires-Dist: requests
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+ Requires-Dist: urllib3
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+ Requires-Dist: oss2
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+ Requires-Dist: docker
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+ Requires-Dist: pimento
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+ Requires-Dist: qprompt
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+ Requires-Dist: requests_toolbelt
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+ Requires-Dist: validator.py
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+ Requires-Dist: python-minifier
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+ Requires-Dist: rich
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+
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+
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+ <div align="center">
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+
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+ # BGE 开放平台 SDK - Python 版
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+
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+
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+ <p>
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+ <!-- Place this tag where you want the button to render. -->
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+ <a class="github-button" href="https://github.com/teambge/bge-python-sdk/subscription" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Watch teambge/bge-python-sdk on GitHub">
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+ <img alt="GitHub forks" src="https://img.shields.io/github/watchers/teambge/bge-python-sdk?style=social">
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+ </a>
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+ <a class="github-button" href="https://github.com/teambge/bge-python-sdk" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Star teambge/bge-python-sdk on GitHub">
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+ <img alt="GitHub forks" src="https://img.shields.io/github/stars/teambge/bge-python-sdk?style=social">
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+ </a>
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+ <a class="github-button" href="https://github.com/teambge/bge-python-sdk/fork" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Fork teambge/bge-python-sdk on GitHub">
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+ <img alt="GitHub forks" src="https://img.shields.io/github/forks/teambge/bge-python-sdk?style=social">
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+ </a>
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+ </p>
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+
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+ <p>
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+ <img src="https://img.shields.io/github/v/release/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/v/release/teambge/bge-python-sdk" alt="GitHub release (latest by date)">
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+ <img src="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" alt="GitHub top language">
70
+ <img src="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" alt="GitHub code size in bytes">
71
+ <img src="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" alt="GitHub commit activity">
72
+ <img src="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" data-origin="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" alt="PyPI - Downloads">
73
+ </p>
74
+
75
+ <pre>
76
+ ____ ____________ ______ __________ ______ _ __ _____ ____ __ __
77
+ / __ )/ ____/ ____/ / __ \ \/ /_ __/ / / / __ \/ | / / / ___// __ \/ //_/
78
+ / __ / / __/ __/ / /_/ /\ / / / / /_/ / / / / |/ / \__ \/ / / / ,<
79
+ / /_/ / /_/ / /___ / ____/ / / / / / __ / /_/ / /| / ___/ / /_/ / /| |
80
+ /_____/\____/_____/ /_/ /_/ /_/ /_/ /_/\____/_/ |_/ /____/_____/_/ |_|
81
+ </pre>
82
+
83
+ </div>
84
+
85
+ BGE 开放平台 是一个跨越多级数据的(多)组学数据平台,开发者在获得用户授权后,将可以通过开放平台提供的 API 访问关联用户的(多)组学数据,甚至写入数据。
86
+
87
+ 基于开放平台 API,开发者可避免重复开发采样、提取、测序和生信分析等繁复的流程,直接使用清洁的结构化数据。
88
+
89
+ 开发者可以通过开放平台提供的 API 创建极具创意性的(多)组学应用,如:
90
+
91
+ * 包含药物代谢或药物服用建议的应用
92
+ * 包含体检数据和营养代谢基因的餐饮应用
93
+ * 包含肠道菌群数据和痛风相关基因的痛风管理应用
94
+ * 基于祖源成分的社交网络应用,等等
95
+
96
+ BGE 开放平台 API 基于 OAuth 2.0 开发,并使用 SSL/TLS 加密传输,确保用户数据正确无误地授权,并安全地传输到第三方应用,确保用户数据不会被未经授权的应用获得。
97
+
98
+ # 安装
99
+
100
+ 推荐使用 pip 进行安装。
101
+
102
+ ```shell
103
+ $ pip install -U bge-python-sdk
104
+ ```
105
+
106
+ 或者
107
+
108
+ ```shell
109
+ $ make install
110
+ ```
111
+
112
+ 再或者
113
+
114
+ ```shell
115
+ $ python setup.py install
116
+ ```
117
+
118
+ # SDK 文档
119
+
120
+ 更加详细的 SDK 文档请查看 [SDK Documents](https://api.bge.genomics.cn/doc/#/sdk/README)。
121
+
122
+ # 快速开始
123
+
124
+ BGE 开放平台支持 OAuth2 的两种模式,分别是用户授权模式、客户端模式。
125
+
126
+ 详情请参考开放平台文档 [https://api.bge.genomics.cn/doc](https://api.bge.genomics.cn/doc) 。
127
+
128
+ ## ENDPOINTS
129
+
130
+ BGE 开放平台提供了如下可用的 `endpoint`。
131
+
132
+ | endpoint | 解释 |
133
+ | --------------------------- | ----------------------------------------------------------- |
134
+ | https://api.bge.genomics.cn | **线上环境** 主域名地址 |
135
+ | https://api.bge.omgut.com | **线上环境** 副域名地址,主域名地址不可用时可替换此域名地址 |
136
+
137
+ ## 授权码模式
138
+
139
+ ```python
140
+ from bgesdk import OAuth2, API
141
+
142
+ code = '???????' # 用户确认授权后平台返回的授权码
143
+ client_id = 'demo'
144
+ client_secret = 'demo'
145
+ redirect_uri = 'http://test.cn'
146
+ oauth2 = OAuth2(
147
+ client_id, client_secret,
148
+ endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
149
+ verbose=False)
150
+ token = oauth2.exchange_authorization_code(code, redirect_uri)
151
+
152
+ api = oauth2.get_api(token.access_token)
153
+ print(api.get_user())
154
+
155
+ api = API(token.access_token)
156
+ print(api.get_user())
157
+ ```
158
+
159
+ ## 客户端模式
160
+
161
+ ```python
162
+ from bgesdk import OAuth2, API
163
+
164
+ client_id = 'demo'
165
+ client_secret = 'demo'
166
+ oauth2 = OAuth2(
167
+ client_id, client_secret,
168
+ endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
169
+ verbose=False)
170
+ token = oauth2.get_credentials_token()
171
+
172
+ api = oauth2.get_api(token.access_token)
173
+ print(api.get_variants('E-B1243433', 'rs333'))
174
+
175
+ api = API(token.access_token)
176
+ print(api.get_variants('E-B1243433', 'rs333'))
177
+ ```
178
+
179
+ # Contributors
180
+
181
+ * xiangji1204's [github](https://github.com/xiangji1204)
182
+ * leafcoder(leafcoder@gmail.com)'s [github](https://github.com/leafcoder)
@@ -1,3 +1,2 @@
1
1
  [console_scripts]
2
2
  bge = bgesdk.__main__:main
3
-
@@ -890,18 +890,30 @@ class API(object):
890
890
  timeout = self.timeout
891
891
  try:
892
892
  with requests.get(url, stream=True, timeout=timeout) as r:
893
- total = int(r.headers['content-length'])
894
- for chunk in r.iter_content(chunk_size):
895
- size += len(chunk)
896
- eq_size = int(size * prog_size / total)
897
- equal_s = '=' * eq_size
898
- blank_s = ' ' * (prog_size - eq_size)
899
- progress = '>'.join((equal_s, blank_s))
900
- percent = '%.2f%%' % float(size / total * 100)
901
- sys.stdout.write(
902
- '\r\t%s [%s]' % (percent.rjust(7), progress)
903
- )
904
- fp.write(chunk)
893
+ total = r.headers.get('content-length')
894
+ if total is not None:
895
+ total = int(total)
896
+ for chunk in r.iter_content(chunk_size):
897
+ size += len(chunk)
898
+ eq_size = int(size * prog_size / total)
899
+ equal_s = '=' * eq_size
900
+ blank_s = ' ' * (prog_size - eq_size)
901
+ progress = '>'.join((equal_s, blank_s))
902
+ percent = '%.2f%%' % float(size / total * 100)
903
+ sys.stdout.write(
904
+ '\r\t%s [%s]' % (percent.rjust(7), progress)
905
+ )
906
+ sys.stdout.flush()
907
+ fp.write(chunk)
908
+ else:
909
+ for chunk in r.iter_content(chunk_size):
910
+ size += len(chunk)
911
+ sys.stdout.write(
912
+ '\r\t已下载文件:%s' % human_byte(size).ljust(7)
913
+ )
914
+ sys.stdout.flush()
915
+ fp.write(chunk)
916
+ sys.stdout.write('\n')
905
917
  flush_func = getattr(fp, 'flush', None)
906
918
  if flush_func:
907
919
  flush_func()
@@ -1,3 +1,3 @@
1
1
  #-*- coding: utf-8 -*-
2
2
 
3
- __version__ = '0.6.1'
3
+ __version__ = '0.6.2'
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bge-python-sdk
3
- version = 0.6.1
3
+ version = 0.6.2
4
4
  description = 可用于调用 BGE 开放平台的相关接口。
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,167 +0,0 @@
1
- Metadata-Version: 2.1
2
- Name: bge-python-sdk
3
- Version: 0.6.1
4
- Summary: 可用于调用 BGE 开放平台的相关接口。
5
- Home-page: https://github.com/teambge/bge-python-sdk
6
- Author: leafcoder,xiangji1204
7
- Author-email: leafcoder@gmail.com,xiangji1204@genomics.cn
8
- Maintainer: leafcoder
9
- Maintainer-email: leafcoder@gmail.com
10
- License: MIT
11
- Description:
12
- <div align="center">
13
-
14
- # BGE 开放平台 SDK - Python 版
15
-
16
-
17
- <p>
18
- <!-- Place this tag where you want the button to render. -->
19
- <a class="github-button" href="https://github.com/teambge/bge-python-sdk/subscription" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Watch teambge/bge-python-sdk on GitHub">
20
- <img alt="GitHub forks" src="https://img.shields.io/github/watchers/teambge/bge-python-sdk?style=social">
21
- </a>
22
- <a class="github-button" href="https://github.com/teambge/bge-python-sdk" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Star teambge/bge-python-sdk on GitHub">
23
- <img alt="GitHub forks" src="https://img.shields.io/github/stars/teambge/bge-python-sdk?style=social">
24
- </a>
25
- <a class="github-button" href="https://github.com/teambge/bge-python-sdk/fork" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Fork teambge/bge-python-sdk on GitHub">
26
- <img alt="GitHub forks" src="https://img.shields.io/github/forks/teambge/bge-python-sdk?style=social">
27
- </a>
28
- </p>
29
-
30
- <p>
31
- <img src="https://img.shields.io/github/v/release/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/v/release/teambge/bge-python-sdk" alt="GitHub release (latest by date)">
32
- <img src="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" alt="GitHub top language">
33
- <img src="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" alt="GitHub code size in bytes">
34
- <img src="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" alt="GitHub commit activity">
35
- <img src="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" data-origin="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" alt="PyPI - Downloads">
36
- </p>
37
-
38
- <pre>
39
- ____ ____________ ______ __________ ______ _ __ _____ ____ __ __
40
- / __ )/ ____/ ____/ / __ \ \/ /_ __/ / / / __ \/ | / / / ___// __ \/ //_/
41
- / __ / / __/ __/ / /_/ /\ / / / / /_/ / / / / |/ / \__ \/ / / / ,<
42
- / /_/ / /_/ / /___ / ____/ / / / / / __ / /_/ / /| / ___/ / /_/ / /| |
43
- /_____/\____/_____/ /_/ /_/ /_/ /_/ /_/\____/_/ |_/ /____/_____/_/ |_|
44
- </pre>
45
-
46
- </div>
47
-
48
- BGE 开放平台 是一个跨越多级数据的(多)组学数据平台,开发者在获得用户授权后,将可以通过开放平台提供的 API 访问关联用户的(多)组学数据,甚至写入数据。
49
-
50
- 基于开放平台 API,开发者可避免重复开发采样、提取、测序和生信分析等繁复的流程,直接使用清洁的结构化数据。
51
-
52
- 开发者可以通过开放平台提供的 API 创建极具创意性的(多)组学应用,如:
53
-
54
- * 包含药物代谢或药物服用建议的应用
55
- * 包含体检数据和营养代谢基因的餐饮应用
56
- * 包含肠道菌群数据和痛风相关基因的痛风管理应用
57
- * 基于祖源成分的社交网络应用,等等
58
-
59
- BGE 开放平台 API 基于 OAuth 2.0 开发,并使用 SSL/TLS 加密传输,确保用户数据正确无误地授权,并安全地传输到第三方应用,确保用户数据不会被未经授权的应用获得。
60
-
61
- # 安装
62
-
63
- 推荐使用 pip 进行安装。
64
-
65
- ```shell
66
- $ pip install -U bge-python-sdk
67
- ```
68
-
69
- 或者
70
-
71
- ```shell
72
- $ make install
73
- ```
74
-
75
- 再或者
76
-
77
- ```shell
78
- $ python setup.py install
79
- ```
80
-
81
- # SDK 文档
82
-
83
- 更加详细的 SDK 文档请查看 [SDK Documents](https://api.bge.genomics.cn/doc/#/sdk/README)。
84
-
85
- # 快速开始
86
-
87
- BGE 开放平台支持 OAuth2 的两种模式,分别是用户授权模式、客户端模式。
88
-
89
- 详情请参考开放平台文档 [https://api.bge.genomics.cn/doc](https://api.bge.genomics.cn/doc) 。
90
-
91
- ## ENDPOINTS
92
-
93
- BGE 开放平台提供了如下可用的 `endpoint`。
94
-
95
- | endpoint | 解释 |
96
- | --------------------------- | ----------------------------------------------------------- |
97
- | https://api.bge.genomics.cn | **线上环境** 主域名地址 |
98
- | https://api.bge.omgut.com | **线上环境** 副域名地址,主域名地址不可用时可替换此域名地址 |
99
-
100
- ## 授权码模式
101
-
102
- ```python
103
- from bgesdk import OAuth2, API
104
-
105
- code = '???????' # 用户确认授权后平台返回的授权码
106
- client_id = 'demo'
107
- client_secret = 'demo'
108
- redirect_uri = 'http://test.cn'
109
- oauth2 = OAuth2(
110
- client_id, client_secret,
111
- endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
112
- verbose=False)
113
- token = oauth2.exchange_authorization_code(code, redirect_uri)
114
-
115
- api = oauth2.get_api(token.access_token)
116
- print(api.get_user())
117
-
118
- api = API(token.access_token)
119
- print(api.get_user())
120
- ```
121
-
122
- ## 客户端模式
123
-
124
- ```python
125
- from bgesdk import OAuth2, API
126
-
127
- client_id = 'demo'
128
- client_secret = 'demo'
129
- oauth2 = OAuth2(
130
- client_id, client_secret,
131
- endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
132
- verbose=False)
133
- token = oauth2.get_credentials_token()
134
-
135
- api = oauth2.get_api(token.access_token)
136
- print(api.get_variants('E-B1243433', 'rs333'))
137
-
138
- api = API(token.access_token)
139
- print(api.get_variants('E-B1243433', 'rs333'))
140
- ```
141
-
142
- # Contributors
143
-
144
- * xiangji1204's [github](https://github.com/xiangji1204)
145
- * leafcoder(leafcoder@gmail.com)'s [github](https://github.com/leafcoder)
146
-
147
- Keywords: bge-python-sdk bge bgesdk sdk
148
- Platform: UNKNOWN
149
- Classifier: Development Status :: 5 - Production/Stable
150
- Classifier: Intended Audience :: Developers
151
- Classifier: License :: OSI Approved :: MIT License
152
- Classifier: Natural Language :: Chinese (Simplified)
153
- Classifier: Operating System :: OS Independent
154
- Classifier: Operating System :: Microsoft :: Windows :: Windows 10
155
- Classifier: Operating System :: POSIX :: Linux
156
- Classifier: Programming Language :: Python
157
- Classifier: Programming Language :: Python :: 3
158
- Classifier: Programming Language :: Python :: 3.6
159
- Classifier: Programming Language :: Python :: 3.7
160
- Classifier: Programming Language :: Python :: 3.8
161
- Classifier: Programming Language :: Python :: 3.9
162
- Classifier: Programming Language :: Python :: 3.10
163
- Classifier: Topic :: Software Development :: Libraries
164
- Classifier: Topic :: Software Development :: Libraries :: Python Modules
165
- Classifier: Topic :: Utilities
166
- Requires-Python: >=3.6.3
167
- Description-Content-Type: text/markdown
@@ -1,167 +0,0 @@
1
- Metadata-Version: 2.1
2
- Name: bge-python-sdk
3
- Version: 0.6.1
4
- Summary: 可用于调用 BGE 开放平台的相关接口。
5
- Home-page: https://github.com/teambge/bge-python-sdk
6
- Author: leafcoder,xiangji1204
7
- Author-email: leafcoder@gmail.com,xiangji1204@genomics.cn
8
- Maintainer: leafcoder
9
- Maintainer-email: leafcoder@gmail.com
10
- License: MIT
11
- Description:
12
- <div align="center">
13
-
14
- # BGE 开放平台 SDK - Python 版
15
-
16
-
17
- <p>
18
- <!-- Place this tag where you want the button to render. -->
19
- <a class="github-button" href="https://github.com/teambge/bge-python-sdk/subscription" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Watch teambge/bge-python-sdk on GitHub">
20
- <img alt="GitHub forks" src="https://img.shields.io/github/watchers/teambge/bge-python-sdk?style=social">
21
- </a>
22
- <a class="github-button" href="https://github.com/teambge/bge-python-sdk" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Star teambge/bge-python-sdk on GitHub">
23
- <img alt="GitHub forks" src="https://img.shields.io/github/stars/teambge/bge-python-sdk?style=social">
24
- </a>
25
- <a class="github-button" href="https://github.com/teambge/bge-python-sdk/fork" data-color-scheme="no-preference: light; light: light; dark: dark;" data-show-count="true" aria-label="Fork teambge/bge-python-sdk on GitHub">
26
- <img alt="GitHub forks" src="https://img.shields.io/github/forks/teambge/bge-python-sdk?style=social">
27
- </a>
28
- </p>
29
-
30
- <p>
31
- <img src="https://img.shields.io/github/v/release/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/v/release/teambge/bge-python-sdk" alt="GitHub release (latest by date)">
32
- <img src="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/top/teambge/bge-python-sdk" alt="GitHub top language">
33
- <img src="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/languages/code-size/teambge/bge-python-sdk" alt="GitHub code size in bytes">
34
- <img src="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" data-origin="https://img.shields.io/github/commit-activity/w/teambge/bge-python-sdk" alt="GitHub commit activity">
35
- <img src="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" data-origin="https://static.pepy.tech/personalized-badge/bge-python-sdk?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads" alt="PyPI - Downloads">
36
- </p>
37
-
38
- <pre>
39
- ____ ____________ ______ __________ ______ _ __ _____ ____ __ __
40
- / __ )/ ____/ ____/ / __ \ \/ /_ __/ / / / __ \/ | / / / ___// __ \/ //_/
41
- / __ / / __/ __/ / /_/ /\ / / / / /_/ / / / / |/ / \__ \/ / / / ,<
42
- / /_/ / /_/ / /___ / ____/ / / / / / __ / /_/ / /| / ___/ / /_/ / /| |
43
- /_____/\____/_____/ /_/ /_/ /_/ /_/ /_/\____/_/ |_/ /____/_____/_/ |_|
44
- </pre>
45
-
46
- </div>
47
-
48
- BGE 开放平台 是一个跨越多级数据的(多)组学数据平台,开发者在获得用户授权后,将可以通过开放平台提供的 API 访问关联用户的(多)组学数据,甚至写入数据。
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-
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- 基于开放平台 API,开发者可避免重复开发采样、提取、测序和生信分析等繁复的流程,直接使用清洁的结构化数据。
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-
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- 开发者可以通过开放平台提供的 API 创建极具创意性的(多)组学应用,如:
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-
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- * 包含药物代谢或药物服用建议的应用
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- * 包含体检数据和营养代谢基因的餐饮应用
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- * 包含肠道菌群数据和痛风相关基因的痛风管理应用
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- * 基于祖源成分的社交网络应用,等等
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-
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- BGE 开放平台 API 基于 OAuth 2.0 开发,并使用 SSL/TLS 加密传输,确保用户数据正确无误地授权,并安全地传输到第三方应用,确保用户数据不会被未经授权的应用获得。
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-
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- # 安装
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-
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- 推荐使用 pip 进行安装。
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-
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- ```shell
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- $ pip install -U bge-python-sdk
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- ```
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-
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- 或者
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-
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- ```shell
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- $ make install
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- ```
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-
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- 再或者
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-
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- ```shell
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- $ python setup.py install
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- ```
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-
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- # SDK 文档
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-
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- 更加详细的 SDK 文档请查看 [SDK Documents](https://api.bge.genomics.cn/doc/#/sdk/README)。
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-
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- # 快速开始
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-
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- BGE 开放平台支持 OAuth2 的两种模式,分别是用户授权模式、客户端模式。
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-
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- 详情请参考开放平台文档 [https://api.bge.genomics.cn/doc](https://api.bge.genomics.cn/doc) 。
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-
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- ## ENDPOINTS
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-
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- BGE 开放平台提供了如下可用的 `endpoint`。
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-
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- | endpoint | 解释 |
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- | --------------------------- | ----------------------------------------------------------- |
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- | https://api.bge.genomics.cn | **线上环境** 主域名地址 |
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- | https://api.bge.omgut.com | **线上环境** 副域名地址,主域名地址不可用时可替换此域名地址 |
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-
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- ## 授权码模式
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-
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- ```python
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- from bgesdk import OAuth2, API
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-
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- code = '???????' # 用户确认授权后平台返回的授权码
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- client_id = 'demo'
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- client_secret = 'demo'
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- redirect_uri = 'http://test.cn'
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- oauth2 = OAuth2(
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- client_id, client_secret,
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- endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
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- verbose=False)
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- token = oauth2.exchange_authorization_code(code, redirect_uri)
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-
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- api = oauth2.get_api(token.access_token)
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- print(api.get_user())
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-
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- api = API(token.access_token)
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- print(api.get_user())
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- ```
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-
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- ## 客户端模式
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-
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- ```python
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- from bgesdk import OAuth2, API
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-
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- client_id = 'demo'
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- client_secret = 'demo'
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- oauth2 = OAuth2(
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- client_id, client_secret,
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- endpoint='https://api.bge.genomics.cn', max_retries=3, timeout=16,
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- verbose=False)
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- token = oauth2.get_credentials_token()
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-
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- api = oauth2.get_api(token.access_token)
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- print(api.get_variants('E-B1243433', 'rs333'))
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-
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- api = API(token.access_token)
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- print(api.get_variants('E-B1243433', 'rs333'))
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- ```
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-
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- # Contributors
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-
144
- * xiangji1204's [github](https://github.com/xiangji1204)
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- * leafcoder(leafcoder@gmail.com)'s [github](https://github.com/leafcoder)
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-
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- Keywords: bge-python-sdk bge bgesdk sdk
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- Platform: UNKNOWN
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- Classifier: Development Status :: 5 - Production/Stable
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- Classifier: Intended Audience :: Developers
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- Classifier: License :: OSI Approved :: MIT License
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- Classifier: Natural Language :: Chinese (Simplified)
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- Classifier: Operating System :: OS Independent
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- Classifier: Operating System :: Microsoft :: Windows :: Windows 10
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- Classifier: Operating System :: POSIX :: Linux
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- Classifier: Programming Language :: Python
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- Classifier: Programming Language :: Python :: 3
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- Classifier: Programming Language :: Python :: 3.6
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- Classifier: Programming Language :: Python :: 3.7
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- Classifier: Programming Language :: Python :: 3.8
161
- Classifier: Programming Language :: Python :: 3.9
162
- Classifier: Programming Language :: Python :: 3.10
163
- Classifier: Topic :: Software Development :: Libraries
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- Classifier: Topic :: Software Development :: Libraries :: Python Modules
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- Classifier: Topic :: Utilities
166
- Requires-Python: >=3.6.3
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- Description-Content-Type: text/markdown
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