beta-parameterization 2.3.5__tar.gz → 4.0.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. beta_parameterization-4.0.0/CHANGELOG.md +332 -0
  2. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/CMakeLists.txt +39 -11
  3. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/PKG-INFO +1 -1
  4. beta_parameterization-4.0.0/README.md +191 -0
  5. beta_parameterization-4.0.0/include/beta_parameterization.h +243 -0
  6. beta_parameterization-4.0.0/include/beta_parameterization.hpp +348 -0
  7. beta_parameterization-4.0.0/python/beta_parameterization/__init__.py +22 -0
  8. beta_parameterization-4.0.0/python/beta_parameterization/_cdefs.py +89 -0
  9. beta_parameterization-4.0.0/python/beta_parameterization/api.py +458 -0
  10. beta_parameterization-4.0.0/python/tests/test_api.py +318 -0
  11. beta_parameterization-4.0.0/src/beta_parameterization_c_api_mod.f08 +543 -0
  12. beta_parameterization-4.0.0/src/beta_parameterization_mod.f08 +996 -0
  13. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/src/beta_parameterization_workers_mod.f08 +90 -42
  14. beta_parameterization-4.0.0/tests/beta_param_boundary_test.f08 +256 -0
  15. beta_parameterization-4.0.0/tests/beta_param_equivalence_test.f08 +385 -0
  16. beta_parameterization-4.0.0/tests/beta_param_golden_test.f08 +152 -0
  17. beta_parameterization-4.0.0/tests/beta_param_lifecycle_test.f08 +115 -0
  18. beta_parameterization-4.0.0/tests/beta_param_outputs_test.f08 +187 -0
  19. beta_parameterization-4.0.0/tests/beta_param_property_test.f08 +157 -0
  20. beta_parameterization-4.0.0/tests/beta_param_resolve_test.f08 +81 -0
  21. beta_parameterization-4.0.0/tests/beta_param_standalone_test.f08 +124 -0
  22. beta_parameterization-4.0.0/tests/beta_param_statelessness_test.f08 +304 -0
  23. beta_parameterization-4.0.0/tests/beta_param_status_test.f08 +44 -0
  24. beta_parameterization-4.0.0/tests/beta_pes_sweep.f08 +231 -0
  25. beta_parameterization-4.0.0/tests/c_api_smoke_test.cpp +309 -0
  26. beta_parameterization-4.0.0/tests/golden_capture.f08 +112 -0
  27. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/tests/test_utils_mod.f08 +34 -1
  28. beta_parameterization-4.0.0/tests/thread_stress_test.cpp +242 -0
  29. beta_parameterization-2.3.5/include/beta_parameterization.h +0 -207
  30. beta_parameterization-2.3.5/include/beta_parameterization.hpp +0 -292
  31. beta_parameterization-2.3.5/python/beta_parameterization/__init__.py +0 -23
  32. beta_parameterization-2.3.5/python/beta_parameterization/_cdefs.py +0 -59
  33. beta_parameterization-2.3.5/python/beta_parameterization/api.py +0 -297
  34. beta_parameterization-2.3.5/python/tests/test_api.py +0 -185
  35. beta_parameterization-2.3.5/src/beta_parameterization_c_api_mod.f08 +0 -425
  36. beta_parameterization-2.3.5/src/beta_parameterization_mod.f08 +0 -828
  37. beta_parameterization-2.3.5/tests/beta_param_breakdown_test.f08 +0 -126
  38. beta_parameterization-2.3.5/tests/beta_param_com_test.f08 +0 -97
  39. beta_parameterization-2.3.5/tests/beta_param_core_test.f08 +0 -105
  40. beta_parameterization-2.3.5/tests/beta_param_error_test.f08 +0 -154
  41. beta_parameterization-2.3.5/tests/beta_param_golden_test.f08 +0 -165
  42. beta_parameterization-2.3.5/tests/beta_param_node_set_test.f08 +0 -335
  43. beta_parameterization-2.3.5/tests/c_api_smoke_test.cpp +0 -214
  44. beta_parameterization-2.3.5/tests/golden_capture.f08 +0 -88
  45. beta_parameterization-2.3.5/tests/thread_stress_test.cpp +0 -60
  46. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/.gitignore +0 -0
  47. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/LICENSE +0 -0
  48. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/ci/build-wheel.sh +0 -0
  49. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/pyproject.toml +0 -0
  50. {beta_parameterization-2.3.5 → beta_parameterization-4.0.0}/python/beta_parameterization/_libloader.py +0 -0
@@ -0,0 +1,332 @@
1
+ # Changelog
2
+
3
+ All notable changes to this project are documented here. Versions follow
4
+ semantic versioning; the format follows [Keep a Changelog](https://keepachangelog.com).
5
+
6
+ ## 4.0.0
7
+
8
+ Adoption of the two-tier shape parameterization contract on
9
+ `shape_core_mod` (fortran-foundations 3.0.0). The incremental tier is gone:
10
+ one-shot functions plus one read-only cache, built once and shared across
11
+ threads. Every public surface — Fortran, C, C++, Python — changes; nothing in
12
+ 3.x compiles against 4.0.0 unchanged.
13
+
14
+ ### Changed (breaking)
15
+
16
+ - **One cache type.** `tables_t` is renamed `cache_t`; the mutable 3.x
17
+ `cache_t`, `cache_init_shared_s`, the shared-tables mode and the `target`
18
+ requirement are removed. `cache_init_s(cache, max_params, thetas, status)`.
19
+ C: `beta_param_cache_create(max_params, thetas, n_thetas, status)`; the
20
+ `tables` handle and `beta_param_cache_create_shared` are removed. C++:
21
+ `Tables` is removed, `Cache(max_params, thetas)`. Python:
22
+ `Cache(max_params, thetas)`.
23
+ - **Caches are immutable and shareable.** Every compute takes the cache
24
+ read-only (`intent(in)`, `const` handle, `const` method) and is `pure` in
25
+ Fortran. Any number of threads may compute on one cache. The 3.0.0
26
+ thread-confinement rule is withdrawn.
27
+ - **Options are per call.** `conserve_volume` and `apply_com` move from cache
28
+ creation to each compute, after `params` and before the outputs. One cache
29
+ serves every combination. `cache_radius_grid_unchecked_s` takes `apply_com`
30
+ only: it never volume-scales.
31
+ - **`max_params` replaces `n_params`.** A cache accepts any vector of
32
+ `1 .. max_params` entries, up to 64 (the 8-parameter cap is gone). Missing
33
+ trailing parameters are zero.
34
+ - **Node sets are built from a cache**:
35
+ `node_set_build_s(node_set, cache, thetas, status)`; argument order of the
36
+ node compute is `(cache, params, node_set, conserve_volume, apply_com, radii,
37
+ dr_dthetas, status)`. A node set serves a cache when it was built from a
38
+ cache with at least that cache's `max_params`
39
+ (`BETA_PARAM_ERROR_NODE_SET_MISMATCH` otherwise) — judged on the two
40
+ objects, no longer on the vector length.
41
+ - **Status codes.** Code 6 (`SHAPE_ERROR_TABLES_NOT_INITIALIZED`) is retired
42
+ and never reused; an uninitialized cache passed to `node_set_build_s` now
43
+ returns 2. An empty one-shot vector returns 4 (was 5). `max_params > 64` at
44
+ init returns 1. C: a negative `n_thetas` returns 3 (was 5).
45
+ - **Getters.** `cache_n_params_f` becomes `cache_max_params_f`; C++
46
+ `Cache::n_params()` becomes `max_params()`; Python `Cache.n_params` becomes
47
+ `max_params`, and the `conserve_volume` / `apply_com` attributes are gone.
48
+
49
+ ### Removed
50
+
51
+ - The recompute engine and everything built on it: `cache_recompute_count_f`,
52
+ the `BETA_PARAM_I_*` indices, the dependency map, the minimality test suite.
53
+ - `SHAPE_CACHE_MAX_PARAMS`, `SHAPE_STANDALONE_MAX_PARAMS`
54
+ (use `SHAPE_MAX_PARAMS`), `BETA_PARAM_CACHE_MAX_PARAMS`, Python
55
+ `CACHE_MAX_PARAMS`, `Status.tables_not_initialized`.
56
+
57
+ ### Added
58
+
59
+ - **Trailing zeros are trimmed.** Both tiers reduce a vector to its last
60
+ nonzero entry before any arithmetic, so a short vector and its zero-padded
61
+ form return identical bits. Interior zeros are kept.
62
+ - **README.md** with the shape definition, both tiers in Fortran, C and
63
+ Python, build instructions and version pins.
64
+ - **CI on push and pull request** (`.github/workflows/tests.yml`): every suite
65
+ in Debug and Release, pytest against the built library, and the
66
+ manylinux2014 wheel build.
67
+ - Test suites for the contract's families: `equivalence` (one-shot ≡ cached,
68
+ short ≡ zero-padded), `statelessness`, `boundary`, and a concurrency suite
69
+ running eight threads on one shared cache.
70
+
71
+ ### Fixed
72
+
73
+ - **COM correction on a non-positive volume integral.** With `apply_com`, a
74
+ shape far outside the valid domain (for example `[0, -20]`) made the Newton
75
+ step take the cube root of a negative number: a floating-point trap in Debug
76
+ builds, and in Release a result that depended on a NaN comparison. The
77
+ iteration now reports non-convergence (103). Without `apply_com` such a
78
+ shape is still rejected by the validity gate (100).
79
+ - **C API stack overflow on a large wrong size.** Marshalling buffers were
80
+ caller-sized automatic arrays; under Release a large wrong size argument
81
+ overflowed the stack before the size was checked. They are heap-allocated
82
+ now: the call returns `BETA_PARAM_ERROR_INVALID_BUFFER_SIZE`.
83
+ - **Allocation failure in cache or node-set build** returns
84
+ `SHAPE_ERROR_INVALID_GRID` (3) instead of terminating the process.
85
+
86
+ ### Build
87
+
88
+ - The library's own objects are compiled with `-fno-lto`. Under
89
+ `-flto -ffast-math` the summation kernels were inlined into each caller and
90
+ optimized per call site, so the same call could return different last bits
91
+ from different call sites. Without LTO every caller executes one machine-code
92
+ body per kernel, which is what makes the bitwise guarantees hold. Cost: about
93
+ 30% on shape evaluation time. Consumers keep LTO for their own code.
94
+ - fortran-foundations pin 2.4.0 → 3.0.0.
95
+
96
+ ## 3.0.0
97
+
98
+ Adoption of the three-tier shape parameterization contract against
99
+ `shape_core_mod` (fortran-foundations 2.4.0). Every public surface — Fortran,
100
+ C, C++, Python — changes. Read the breaking-change list before upgrading;
101
+ nothing in 2.x compiles against 3.0.0 unchanged.
102
+
103
+ ### BREAKING: thread-safety promise withdrawn
104
+
105
+ **The 2.x guarantee that one cache serves concurrent computes from many threads
106
+ is gone.** It was never true once the cache started tracking recompute state.
107
+
108
+ | object | 3.0.0 rule |
109
+ |---|---|
110
+ | `tables_t` / `beta_param_tables_t*` / `Tables` | immutable after creation; share across threads for concurrent reads |
111
+ | `node_set_t` / `beta_param_node_set_t*` / `NodeSet` | immutable after build; share across threads for concurrent reads |
112
+ | `cache_t` / `beta_param_cache_t*` / `Cache` / Python `Cache` | **THREAD-CONFINED**; every compute mutates it; concurrent use from more than one thread is undefined |
113
+
114
+ The supported pattern is one shared `tables_t` plus one cache per thread, built
115
+ with `cache_init_shared_s` / `beta_param_cache_create_shared()` /
116
+ `Tables`-taking `Cache` constructor. Callers that fanned out one 2.x cache
117
+ across an OpenMP region **must** hoist a per-thread cache; the old code will
118
+ race silently. C++ `Cache` compute methods are no longer `const` — the compiler
119
+ catches most of these at the call site.
120
+
121
+ **Fortran callers of `cache_init_shared_s` MUST declare their `tables_t` with
122
+ the `target` attribute.** The cache stores a pointer to it, and a pointer
123
+ associated with a non-target dummy becomes undefined when that procedure
124
+ returns (F2018 8.5.17). Without `target` the code compiles, links and usually
125
+ appears to work — then reads freed memory. Declare
126
+ `type(tables_t), target :: tables`.
127
+
128
+ ### Added
129
+
130
+ - **In-library volume conservation.** `conserve_volume` is a cache/standalone
131
+ creation flag. The factor `c = (2 / Σᵢ wᵢ Rᵢ³)^(1/3)` is computed on the
132
+ internal GL-512 set over the COM-corrected, unscaled shape, after validation,
133
+ and applied to radii, dR/dθ and the polar radii — never to β-space values.
134
+ Consumers that rescaled shapes themselves (wmmm's
135
+ `compute_volume_factor_from_dense_f`) should drop their copy.
136
+ - `apply_com` as a creation flag, replacing the separate
137
+ `*_with_com_shift` entry points.
138
+ - `tables_t` — a shared, immutable tables level (normalization constants,
139
+ Gauss-Legendre set, Legendre tables at the primary thetas) with
140
+ `tables_init_s` / `tables_free_s` / `tables_max_l_f` / `tables_n_thetas_f`.
141
+ - `status_message_f(status)` (C: `beta_param_status_message`) — one pure lookup
142
+ returning a fixed string per code.
143
+ - `cache_radius_grid_unchecked_s` — the rendering/diagnostic path: no validity
144
+ gate, no volume scaling, usage errors only, so a rejected shape still yields
145
+ its outline. Its radii are UNSCALED even on a `conserve_volume` cache; mixing
146
+ it with the checked path draws two outlines of different size for one shape.
147
+ - `cache_recompute_count_f` plus the public intermediate indices
148
+ `BETA_PARAM_I_RESOLVED`, `_I_MIN_RADIUS`, `_I_VOLUME`, `_I_RADII`, `_I_DERIV`
149
+ — always-on recompute counters for cache-minimality testing.
150
+ - `BETA_PARAM_ERROR_NODE_SET_MISMATCH` (106) for an unbuilt node set or one
151
+ whose `max_l` is below the cache's `n_params`.
152
+ - Public constants for the two tier caps, so callers can check before creating
153
+ anything: `SHAPE_CACHE_MAX_PARAMS` (8) and `SHAPE_STANDALONE_MAX_PARAMS` (64)
154
+ re-exported from Fortran, `BETA_PARAM_CACHE_MAX_PARAMS` (8) and
155
+ `BETA_PARAM_MAX_PARAMS_LIMIT` (64) in the C header,
156
+ `beta_param::cache_max_params` / `beta_param::max_params_limit` in the C++
157
+ header, and `CACHE_MAX_PARAMS` (8) / `MAX_BETA_PARAMS_LIMIT` (64) in Python.
158
+ - The documented dependency map lives in the module header of
159
+ `src/beta_parameterization_mod.f08`: five intermediates, every mask = all
160
+ `n_params` bits.
161
+
162
+ ### Changed
163
+
164
+ - **BREAKING: the cached tier now caps `n_params` at 8, down from 64.** A cache
165
+ carries the recompute engine, whose per-intermediate dependency masks are
166
+ fixed-width, so `shape_core`'s `SHAPE_CACHE_MAX_PARAMS` = 8 is the hard limit.
167
+ `cache_init_s` / `cache_init_shared_s` reject `n_params > 8` with
168
+ `SHAPE_ERROR_TOO_MANY_PARAMS` (1) and `n_params < 1` with
169
+ `SHAPE_ERROR_INVALID_INIT` (5) — the engine check runs before any table is
170
+ built, so nothing is allocated. **The standalone tier is unaffected and still
171
+ accepts up to 64** (`SHAPE_STANDALONE_MAX_PARAMS`): it constructs no engine.
172
+ 2.x accepted `max_beta_params` up to 64 for the cache, so any consumer that
173
+ created a cache with more than 8 parameters — wmmm's
174
+ `number_of_deformation_parameters = 20` is the known case — fails at cache
175
+ creation and must either reduce its parameter count or move to the standalone
176
+ tier. Beta PES calculations realistically stay within 8 dimensions; wmmm's
177
+ 20 existed for fos→beta conversion, which is obsolete now that fos works on
178
+ the radius grid directly.
179
+ - **BREAKING: the internal uniform grid is gone.** 2.x caches took `n_grid` and
180
+ generated their own uniform theta grid. 3.0.0 takes an explicit **primary
181
+ theta set** — `tables_init_s(tables, max_l, thetas, status)`,
182
+ `cache_init_s(cache, n_params, thetas, ...)`. The caller owns the grid.
183
+ Pole values (θ = 0, π) are rejected as cache input; get them analytically
184
+ from `cache_resolve_shape_s`'s `r_north` / `r_south`.
185
+ - **BREAKING: all `message` arguments removed** from every entry point in
186
+ Fortran, C, C++ and Python. Diagnostics are the integer status plus
187
+ `status_message_f`. No per-call message formatting exists anywhere.
188
+ - **BREAKING (bitwise): the COM correction is now Newton's method** on the
189
+ numerator of the COM integral (`N(β10) = Σᵢ wᵢ xᵢ Rᵢ⁴`,
190
+ `N'(β10) = 4·C₁·Σᵢ wᵢ xᵢ² Rᵢ³`), replacing 2.x fixed-point iteration. The
191
+ tolerance (`|z_cm| < 1e-5`) and iteration cap (50) are unchanged, so the same
192
+ shapes converge — but **corrected β₁₀ and every downstream radius differ in
193
+ the last bits from 2.x**. Goldens were re-baselined; consumers pinning exact
194
+ values must re-baseline too.
195
+ - **BREAKING: `beta_con` is off the public surface.** 2.x
196
+ `cache_resolve_shape` returned the resolved coefficient array and
197
+ `compute_radius_and_derivative` took it back as an argument. 3.0.0 keeps
198
+ resolved coefficients inside the cache as intermediate 1;
199
+ `cache_resolve_shape_s` returns only `corrected_beta10`, `r_north`, `r_south`
200
+ and `volume_factor`, and node evaluation takes `(cache, node_set, params)`.
201
+ - Type-bound methods (`cache%init`, `cache%compute_radius_grid`, …) replaced by
202
+ free subroutines (`cache_init_s`, `cache_radius_grid_s`, …), matching the
203
+ contract's naming.
204
+ - Standalone tier: `compute_radius_grid_standalone_s(params, thetas,
205
+ conserve_volume, apply_com, radii, status)` and
206
+ `compute_radius_and_derivative_standalone_s(...)`. `n_params = size(params)`,
207
+ accepted up to the **standalone** cap of 64
208
+ (`SHAPE_STANDALONE_MAX_PARAMS` = `MAX_BETA_PARAMS_LIMIT`); above →
209
+ `SHAPE_ERROR_TOO_MANY_PARAMS`, never silent truncation. The
210
+ `max_beta_params` padding argument is removed. Tier 1 never constructs an
211
+ engine, which is why it keeps the higher cap.
212
+ - Failure semantics are now uniform: on ANY nonzero status inside a checked
213
+ cached compute the library zero-fills every output and invalidates the whole
214
+ engine, so the next call runs cold. Usage errors follow the contract's
215
+ normative order — a buffer-size mismatch (104) is reported before a node-set
216
+ mismatch (106).
217
+ - Minimum fortran-foundations is **2.4.0** (`shape_core_mod`); gcc-opts stays at
218
+ **2.0.0**.
219
+
220
+ ### Changed: status codes
221
+
222
+ Shared contract codes (0–99) come from `shape_core_mod`: `SHAPE_VALID` 0,
223
+ `SHAPE_ERROR_TOO_MANY_PARAMS` 1, `SHAPE_ERROR_CACHE_NOT_INITIALIZED` 2,
224
+ `SHAPE_ERROR_INVALID_GRID` 3 (theta floor: `size(thetas) >= 2`),
225
+ `SHAPE_ERROR_WRONG_PARAM_COUNT` 4, `SHAPE_ERROR_INVALID_INIT` 5,
226
+ `SHAPE_ERROR_TABLES_NOT_INITIALIZED` 6.
227
+
228
+ Library codes are renamed `LEGENDRE_*` → `BETA_PARAM_ERROR_*` and renumbered
229
+ ≥ 100. This range is **append-only** from 3.0.0 on:
230
+
231
+ | old (2.x) | new (3.0.0) |
232
+ |---|---|
233
+ | `LEGENDRE_ERROR_NORTH_POLE` 1 | `BETA_PARAM_ERROR_NORTH_POLE` 100 |
234
+ | `LEGENDRE_ERROR_SOUTH_POLE` 2 | `BETA_PARAM_ERROR_SOUTH_POLE` 101 |
235
+ | `LEGENDRE_ERROR_INTERIOR_NEGATIVE` 4 | `BETA_PARAM_ERROR_INTERIOR_NEGATIVE` 102 |
236
+ | `LEGENDRE_ERROR_COM_NOT_CONVERGED` 7 | `BETA_PARAM_ERROR_COM_NOT_CONVERGED` 103 |
237
+ | `LEGENDRE_ERROR_INVALID_BUFFER_SIZE` 8 | `BETA_PARAM_ERROR_INVALID_BUFFER_SIZE` 104 |
238
+ | `LEGENDRE_ERROR_POLE_NODE` 9 | `BETA_PARAM_ERROR_POLE_NODE` 105 |
239
+ | — (new) | `BETA_PARAM_ERROR_NODE_SET_MISMATCH` 106 |
240
+ | `LEGENDRE_ERROR_EMPTY_PARAMS` 3 | → shared 4 (compute) / 5 (init) |
241
+ | `LEGENDRE_ERROR_INVALID_MAX_PARAMS` 5 | → shared 5 / 3 / 2 by cause |
242
+ | `LEGENDRE_ERROR_TOO_MANY_PARAMS` 6 | → shared 1 |
243
+ | `LEGENDRE_ERROR_NO_UNIFORM_GRID` 10 | removed (no uniform grid) |
244
+
245
+ Note that the old and new numbering overlap: 2.x code 1 meant "north pole",
246
+ 3.0.0 code 1 means "too many params". Callers comparing raw integers must be
247
+ updated, not merely recompiled.
248
+
249
+ ### Changed: C API
250
+
251
+ Handle-based, with statuses reported through out-parameters instead of
252
+ in-band returns:
253
+
254
+ - `beta_param_tables_create(max_l, thetas, n_thetas, int* status)` /
255
+ `beta_param_tables_destroy` — new handle type `beta_param_tables_t*`.
256
+ - `beta_param_cache_create(n_params, thetas, n_thetas, conserve_volume,
257
+ apply_com, int* status)` and
258
+ `beta_param_cache_create_shared(tables, n_params, conserve_volume, apply_com,
259
+ int* status)` — both return `NULL` on failure and write the rejecting code to
260
+ the nullable `status` out-param. The 2.x `n_grid` + `message` arguments are
261
+ gone.
262
+ - Computes drop the `compute_` infix and the `_with_com_shift` variants:
263
+ `beta_param_cache_radius_grid`, `_radius_and_derivative`,
264
+ `_radius_grid_unchecked`, `_resolve_shape`, `_node_radius_and_derivative`,
265
+ `beta_param_radius_grid_standalone`, `_radius_and_derivative_standalone`.
266
+ Each returns the status code directly.
267
+ - `beta_param_status_message(int)` returns a static string; no caller-supplied
268
+ message buffers anywhere.
269
+ - Lifetime rule: a tables handle passed to `beta_param_cache_create_shared()`
270
+ or `beta_param_node_set_create()` must outlive everything built from it;
271
+ `beta_param_cache_destroy()` never frees shared tables.
272
+
273
+ ### Changed: C++ header
274
+
275
+ `beta_parameterization.hpp` (C++20, header-only) exposes `Tables`, `Cache` and
276
+ `NodeSet` RAII wrappers. `Cache` is move-only and thread-confined; its compute
277
+ methods are non-`const`. Status strings come from `beta_param_status_message`.
278
+ The 2.x concurrent-compute documentation is replaced, not amended.
279
+
280
+ ### Changed: Python wheel
281
+
282
+ - **BREAKING: `NodeSet` is removed.** BetaRender's single-set usage maps onto
283
+ the primary theta set. Node sets return to Python only when a consumer needs
284
+ a genuine second set — the same principle that keeps `tables_t` out of
285
+ Python.
286
+ - **BREAKING: `theta_grid(n)` is now the OPEN uniform grid**
287
+ `theta_i = i·π/(n+1), i = 1..n`. The 2.x closed `linspace(0, π, n)` includes
288
+ both poles, which the pole guard now rejects as cache input. Close plotted
289
+ curves with the analytic `r_north` / `r_south` from `resolve_shape`.
290
+ - Module-level tier 1: `radius_grid(params, thetas, conserve_volume=False,
291
+ apply_com=False)`, `radius_and_derivative(...)`.
292
+ - `Cache(n_params, thetas, conserve_volume=False, apply_com=False)` with
293
+ `.radius_grid`, `.radius_and_derivative`, `.radius_grid_unchecked`,
294
+ `.resolve_shape`. Thread-confined.
295
+ - **Returns are result objects, not exceptions**: `RadiusGridResult`,
296
+ `RadiusDerivativeResult`, `ResolvedShape`, each with `.ok`, `.status` and a
297
+ `.message` property. Shape-validation failures come back as a status-carrying
298
+ result; `BetaParamError` is raised only for usage errors (closed handle,
299
+ non-1-D params, create failure).
300
+ - The `Status` enum is renumbered per the table above.
301
+
302
+ ### Removed
303
+
304
+ - Concurrent-compute-on-one-cache support (see the breaking section above).
305
+ - The internally generated uniform theta grid and
306
+ `LEGENDRE_ERROR_NO_UNIFORM_GRID`.
307
+ - All `message` output arguments and the message-formatting code behind them.
308
+ - `*_with_com_shift` entry points (Fortran, C), superseded by the `apply_com`
309
+ creation flag.
310
+ - `beta_con` from every public signature.
311
+ - The `max_beta_params` padding argument on the standalone entry points.
312
+ - Python `NodeSet`.
313
+
314
+ ### Migration sketch
315
+
316
+ ```fortran
317
+ ! 2.x
318
+ call cache%init(max_beta_params = 4_ik, n_grid = 80_ik, error_code = ec, message = msg)
319
+ call cache%compute_radius_grid_with_com_shift(params, radii, ec, msg)
320
+ call cache%destroy()
321
+
322
+ ! 3.0.0 — the caller owns the theta set; flags are set once, at creation
323
+ thetas = [(i * PI / 81.0_rk, i = 1, 80)] ! open grid: no poles
324
+ call cache_init_s(cache, n_params = 4_ik, thetas = thetas, &
325
+ conserve_volume = .false., apply_com = .true., status = status)
326
+ call cache_radius_grid_s(cache, params, radii, status)
327
+ call cache_free_s(cache)
328
+ ```
329
+
330
+ ## 2.3.4 and earlier
331
+
332
+ No changelog was kept before 3.0.0. See the git history.
@@ -3,7 +3,7 @@ cmake_minimum_required(VERSION 3.20)
3
3
  include(FetchContent)
4
4
 
5
5
  project(beta-parameterization
6
- VERSION 2.3.4
6
+ VERSION 4.0.0
7
7
  LANGUAGES Fortran CXX
8
8
  DESCRIPTION "Beta parameterization for nuclear physics applications"
9
9
  )
@@ -14,19 +14,19 @@ set(CMAKE_CXX_EXTENSIONS OFF)
14
14
 
15
15
  # --- Fetch GCC compiler options package ---
16
16
  FetchContent_Declare(
17
- GCC-Compiler-Options
18
- GIT_REPOSITORY https://github.com/AleksanderAugustyn/GCC-Compiler-Options.git
17
+ gcc-compiler-options
18
+ GIT_REPOSITORY https://github.com/AleksanderAugustyn/gcc-compiler-options.git
19
19
  GIT_TAG 2.0.0
20
20
  )
21
- FetchContent_MakeAvailable(GCC-Compiler-Options)
21
+ FetchContent_MakeAvailable(gcc-compiler-options)
22
22
 
23
23
  # --- Fetch foundational Fortran modules ---
24
24
  FetchContent_Declare(
25
- Fortran-Foundations
26
- GIT_REPOSITORY https://github.com/AleksanderAugustyn/Fortran-Foundations.git
27
- GIT_TAG 2.3.2
25
+ fortran-foundations
26
+ GIT_REPOSITORY https://github.com/AleksanderAugustyn/fortran-foundations.git
27
+ GIT_TAG 3.0.0
28
28
  )
29
- FetchContent_MakeAvailable(Fortran-Foundations)
29
+ FetchContent_MakeAvailable(fortran-foundations)
30
30
 
31
31
  # --- Preprocessor & build type ---
32
32
  set(CMAKE_Fortran_PREPROCESS ON)
@@ -35,7 +35,7 @@ if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
35
35
  set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "RelWithDebInfo" "Release")
36
36
  endif ()
37
37
 
38
- # --- Compiler flags via GCC-Compiler-Options ---
38
+ # --- Compiler flags via gcc-compiler-options ---
39
39
  include(GCCCompilerOptions/FortranCompilerOptions)
40
40
  create_fortran_library_interface(TARGET beta_parameterization_flags)
41
41
 
@@ -46,6 +46,16 @@ set(BETA_PARAM_SOURCES
46
46
  src/beta_parameterization_c_api_mod.f08
47
47
  )
48
48
 
49
+ # --- No LTO for the library's own objects ---
50
+ # Release builds use -flto=auto -ffast-math. With LTO the summation kernels are
51
+ # inlined into every caller and optimized per call site, so the same call can
52
+ # return different last bits from different call sites — which breaks the
53
+ # contract's bitwise guarantees (one-shot == cached, statelessness,
54
+ # concurrency). Compiled without LTO, each kernel is ONE machine-code body that
55
+ # every caller executes. Consumers keep LTO for their own code.
56
+ # Source-file property so it lands after the flags-interface options (last wins).
57
+ set_source_files_properties(${BETA_PARAM_SOURCES} PROPERTIES COMPILE_OPTIONS "-fno-lto")
58
+
49
59
  # --- Static library target ---
50
60
  add_library(beta_parameterization STATIC ${BETA_PARAM_SOURCES})
51
61
  target_link_libraries(beta_parameterization
@@ -118,7 +128,8 @@ set_target_properties(beta_param_test_utils PROPERTIES
118
128
  target_include_directories(beta_param_test_utils PUBLIC
119
129
  $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod_files_tests>)
120
130
 
121
- set(BETA_PARAM_TEST_SUITES core com error breakdown golden node_set)
131
+ set(BETA_PARAM_TEST_SUITES status lifecycle resolve outputs standalone property golden
132
+ equivalence statelessness boundary)
122
133
  foreach (suite IN LISTS BETA_PARAM_TEST_SUITES)
123
134
  add_executable(beta_param_${suite}_test tests/beta_param_${suite}_test.f08)
124
135
  target_link_libraries(beta_param_${suite}_test PRIVATE
@@ -134,19 +145,36 @@ endforeach ()
134
145
  set_source_files_properties(tests/beta_param_golden_test.f08 PROPERTIES
135
146
  COMPILE_OPTIONS "-Wno-conversion-extra;-Wno-error=conversion-extra")
136
147
 
148
+ # Capture tool for the golden baseline: an executable, never a test.
137
149
  add_executable(golden_capture tests/golden_capture.f08)
138
150
  target_link_libraries(golden_capture PRIVATE
139
151
  beta_parameterization beta_param_test_utils beta_parameterization_flags)
140
152
  set_target_properties(golden_capture PROPERTIES
141
153
  Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod_files_tests/capture)
142
154
 
155
+ # PES-range sweep: 1.55M shapes, far too slow for ctest. An executable driven
156
+ # by an explicit custom target, never registered with add_test.
157
+ add_executable(beta_pes_sweep tests/beta_pes_sweep.f08)
158
+ target_link_libraries(beta_pes_sweep PRIVATE
159
+ beta_parameterization beta_param_test_utils beta_parameterization_flags)
160
+ set_target_properties(beta_pes_sweep PROPERTIES
161
+ Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod_files_tests/sweep)
162
+ add_custom_target(test_beta_pes_sweep
163
+ COMMAND beta_pes_sweep
164
+ DEPENDS beta_pes_sweep
165
+ COMMENT "Running the PES-range sweep (1.55M + 172.8k shapes)")
166
+
167
+ # C API smoke test: links the SHARED library, the binary the bindings load.
143
168
  add_executable(c_api_smoke_test tests/c_api_smoke_test.cpp)
144
169
  target_link_libraries(c_api_smoke_test PRIVATE beta_parameterization_cxx)
145
170
  add_test(NAME c_api_smoke COMMAND c_api_smoke_test)
146
171
 
172
+ # Contract family 3 (concurrency): many threads on one shared cache, via the
173
+ # C++ wrapper.
147
174
  find_package(Threads REQUIRED)
148
175
  add_executable(thread_stress_test tests/thread_stress_test.cpp)
149
- target_link_libraries(thread_stress_test PRIVATE beta_parameterization_cxx Threads::Threads)
176
+ target_link_libraries(thread_stress_test PRIVATE
177
+ beta_parameterization_cxx Threads::Threads)
150
178
  add_test(NAME thread_stress COMMAND thread_stress_test)
151
179
 
152
180
  endif ()
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: beta-parameterization
3
- Version: 2.3.5
3
+ Version: 4.0.0
4
4
  Summary: Python bindings for the beta (Legendre) nuclear-shape parameterization library
5
5
  License-Expression: MIT
6
6
  License-File: LICENSE
@@ -0,0 +1,191 @@
1
+ # beta-parameterization
2
+
3
+ Axially symmetric nuclear shapes in the spherical-harmonic (beta) expansion: a Fortran 2018 library with a C API, a C++20 wrapper and a Python wheel. It implements the two-tier shape parameterization contract shared with its sibling libraries.
4
+
5
+ ## The shape
6
+
7
+ The surface radius, in units of the spherical radius R₀, is
8
+
9
+ R(θ) = c · [ 1 + Σ_{λ=1}^{n} β_λ · C_λ · P_λ(cos θ) ], C_λ = √((2λ+1) / 4π)
10
+
11
+ so that `C_λ · P_λ(cos θ)` is the spherical harmonic Y_λ0. `params(λ)` is β_λ0; position λ always means order λ. Up to 64 orders are supported.
12
+
13
+ Two per-call options change the shape:
14
+
15
+ - `apply_com` — β₁ is replaced by the value that puts the centre of mass at the origin (Newton iteration, tolerance 10⁻⁵ R₀).
16
+ - `conserve_volume` — the scale `c = (2 / ∫ R³ d cos θ)^(1/3)` restores the volume of the unit sphere. Without it, `c = 1`.
17
+
18
+ A shape is valid when R > 10⁻⁶ at both poles and on an internal 512-node Gauss-Legendre grid. An invalid shape returns a status code and zero-filled outputs.
19
+
20
+ ## Two tiers
21
+
22
+ 1. **One-shot.** One call computes one shape. All workspace is internal and discarded on return. For scripts and one-off plots.
23
+ 2. **Read-only cache.** Build a cache once for a theta grid, then request any number of shapes against it. The cache holds only what does not depend on the parameters (Legendre tables, quadrature). It is immutable after creation and may be shared across threads. For loops and hot paths.
24
+
25
+ Both tiers return bitwise-identical results. Nothing parameter-dependent is stored: every call is independent of the calls before it.
26
+
27
+ Rules common to both tiers:
28
+
29
+ - A cache accepts `1 .. max_params` parameters per call; a one-shot call accepts `1 .. 64`.
30
+ - Missing trailing parameters are zero. A short vector and its zero-padded form give identical bits.
31
+ - Thetas are in radians, at least two, none at a pole (the open grid `θ_i = i·π/(n+1)` is the usual choice). Pole radii come from `resolve_shape`.
32
+ - Inputs must be finite and of physical magnitude. Release builds use fast-math and cannot detect NaN, and with `apply_com` the quadrature overflows for |β| beyond about 10⁷⁰.
33
+ - Every output is zero-filled on a nonzero status.
34
+
35
+ ### Fortran
36
+
37
+ ```fortran
38
+ program beta_example
39
+ use precision_utilities_mod, only: ik, rk
40
+ use beta_parameterization_mod, only: cache_t, cache_init_s, cache_free_s, &
41
+ cache_radius_grid_s, cache_resolve_shape_s, &
42
+ compute_radius_grid_standalone_s, SHAPE_VALID
43
+ implicit none
44
+
45
+ integer(kind = ik), parameter :: N = 180_ik
46
+ real(kind = rk), parameter :: PI = 3.141592653589793_rk
47
+ type(cache_t) :: cache
48
+ real(kind = rk) :: thetas(N), radii(N)
49
+ real(kind = rk) :: beta10, r_north, r_south, volume_factor
50
+ integer(kind = ik) :: i, status
51
+
52
+ do i = 1_ik, N
53
+ thetas(i) = real(i, rk) * PI / real(N + 1_ik, rk) ! open grid: no pole nodes
54
+ end do
55
+
56
+ ! Tier 1: one-shot. params = (beta1, beta2), both options on.
57
+ call compute_radius_grid_standalone_s([0.0_rk, 0.25_rk], thetas, .true., .true., &
58
+ radii, status)
59
+ if (status /= SHAPE_VALID) error stop 'one-shot failed'
60
+
61
+ ! Tier 2: build once, share, compute many.
62
+ call cache_init_s(cache, 8_ik, thetas, status) ! max_params = 8
63
+ call cache_radius_grid_s(cache, [0.0_rk, 0.25_rk], .true., .true., radii, status)
64
+ call cache_resolve_shape_s(cache, [0.0_rk, 0.25_rk], .true., .true., &
65
+ beta10, r_north, r_south, volume_factor, status)
66
+ call cache_free_s(cache)
67
+ end program beta_example
68
+ ```
69
+
70
+ Cached outputs: `cache_radius_grid_s`, `cache_radius_and_derivative_s`, `cache_resolve_shape_s` (corrected β₁, pole radii, volume factor), `cache_node_radius_and_derivative_s` (radius and derivative at a `node_set_t`: extra thetas built from the cache with `node_set_build_s`), and `cache_radius_grid_unchecked_s` (no validity gate and no volume scaling: the outline of a shape the checked path rejects). To evaluate several theta grids in one call, build one node set over their concatenation.
71
+
72
+ ### C
73
+
74
+ ```c
75
+ #include "beta_parameterization.h"
76
+ #include <stdio.h>
77
+
78
+ int main(void) {
79
+ enum { N = 180 };
80
+ const double pi = 3.141592653589793;
81
+ double thetas[N], radii[N];
82
+ const double params[2] = {0.0, 0.25};
83
+ for (int i = 0; i < N; ++i) thetas[i] = (i + 1) * pi / (N + 1);
84
+
85
+ /* Tier 1: one-shot. */
86
+ int status = beta_param_radius_grid_standalone(params, 2, thetas, N, 1, 1, radii);
87
+ if (status != BETA_PARAM_VALID) {
88
+ printf("%s\n", beta_param_status_message(status));
89
+ return 1;
90
+ }
91
+
92
+ /* Tier 2: build once, share, compute many. */
93
+ beta_param_cache_t* cache = beta_param_cache_create(8, thetas, N, &status);
94
+ if (cache == NULL) {
95
+ printf("%s\n", beta_param_status_message(status));
96
+ return 1;
97
+ }
98
+ status = beta_param_cache_radius_grid(cache, params, 2, 1, 1, radii, N);
99
+ beta_param_cache_destroy(cache);
100
+ return status;
101
+ }
102
+ ```
103
+
104
+ C++20 callers can use the RAII wrapper in `beta_parameterization.hpp` (`beta_param::Cache`, `beta_param::NodeSet`, `const` compute methods, `std::span` arguments).
105
+
106
+ ### Python
107
+
108
+ ```python
109
+ import beta_parameterization as bp
110
+
111
+ thetas = bp.theta_grid(180) # open grid, no pole nodes
112
+
113
+ # Tier 1: one-shot.
114
+ res = bp.radius_grid([0.0, 0.25], thetas, conserve_volume=True, apply_com=True)
115
+ assert res.ok, res.message
116
+
117
+ # Tier 2: build once, share, compute many.
118
+ with bp.Cache(8, thetas) as cache: # max_params = 8
119
+ res = cache.radius_and_derivative([0.0, 0.25], conserve_volume=True, apply_com=True)
120
+ shape = cache.resolve_shape([0.0, 0.25], conserve_volume=True, apply_com=True)
121
+ print(res.radii[:3], shape.volume_factor)
122
+ ```
123
+
124
+ Shape-validation failures come back as results carrying a `Status`; `BetaParamError` is raised only for usage errors (failed create, closed handle, non-1-D input).
125
+
126
+ ## Status codes
127
+
128
+ | Code | Name | Meaning |
129
+ |---|---|---|
130
+ | 0 | `SHAPE_VALID` | success |
131
+ | 1 | `SHAPE_ERROR_TOO_MANY_PARAMS` | `max_params` or a one-shot vector exceeds 64 |
132
+ | 2 | `SHAPE_ERROR_CACHE_NOT_INITIALIZED` | uninitialized cache (or NULL handle) |
133
+ | 3 | `SHAPE_ERROR_INVALID_GRID` | fewer than 2 thetas, or a table that cannot be allocated |
134
+ | 4 | `SHAPE_ERROR_WRONG_PARAM_COUNT` | vector length outside `1..max_params`, or an empty one-shot vector |
135
+ | 5 | `SHAPE_ERROR_INVALID_INIT` | `max_params < 1` |
136
+ | 100 | `BETA_PARAM_ERROR_NORTH_POLE` | radius not positive at θ = 0 |
137
+ | 101 | `BETA_PARAM_ERROR_SOUTH_POLE` | radius not positive at θ = π |
138
+ | 102 | `BETA_PARAM_ERROR_INTERIOR_NEGATIVE` | radius not positive in the interior |
139
+ | 103 | `BETA_PARAM_ERROR_COM_NOT_CONVERGED` | centre-of-mass correction did not converge |
140
+ | 104 | `BETA_PARAM_ERROR_INVALID_BUFFER_SIZE` | output buffer size does not match the theta or node count |
141
+ | 105 | `BETA_PARAM_ERROR_POLE_NODE` | a theta at or beyond a pole |
142
+ | 106 | `BETA_PARAM_ERROR_NODE_SET_MISMATCH` | node set unbuilt, or built for a smaller cache |
143
+
144
+ Codes 0–5 are shared by every shape parameterization library; the C header and the Python `Status` enum mirror all of them under `BETA_PARAM_*` names.
145
+
146
+ ## Building
147
+
148
+ Requires GCC (gfortran, g++) and CMake ≥ 3.20. Dependencies are fetched by CMake.
149
+
150
+ ```bash
151
+ cmake -S . -B build -DCMAKE_BUILD_TYPE=Release
152
+ cmake --build build -j
153
+ ctest --test-dir build --output-on-failure
154
+ ```
155
+
156
+ As a CMake dependency:
157
+
158
+ ```cmake
159
+ FetchContent_Declare(
160
+ beta-parameterization
161
+ GIT_REPOSITORY https://github.com/AleksanderAugustyn/beta-parameterization.git
162
+ GIT_TAG 4.0.0
163
+ )
164
+ FetchContent_MakeAvailable(beta-parameterization)
165
+ target_link_libraries(my_target PRIVATE BetaParameterization::beta_parameterization)
166
+ ```
167
+
168
+ Targets: `BetaParameterization::beta_parameterization` (static, Fortran), `::beta_parameterization_shared` (shared, C API), `::beta_parameterization_cxx` (header-only C++ wrapper over the shared library).
169
+
170
+ Python:
171
+
172
+ ```bash
173
+ pip install beta-parameterization==4.0.0
174
+ ```
175
+
176
+ The wheel is self-contained (manylinux2014, x86-64). To run the Python tests against a local build instead: `BETA_PARAM_LIB=$PWD/build/libbeta_parameterization.so PYTHONPATH=python python -m pytest python/tests`.
177
+
178
+ ## Dependencies
179
+
180
+ | Dependency | Version |
181
+ |---|---|
182
+ | [fortran-foundations](https://github.com/AleksanderAugustyn/fortran-foundations) | 3.0.0 |
183
+ | [gcc-compiler-options](https://github.com/AleksanderAugustyn/gcc-compiler-options) | 2.0.0 |
184
+ | numpy (wheel only) | ≥ 1.21 |
185
+
186
+ ## Design
187
+
188
+ - **Stateless computes.** A cache holds only parameter-independent tables. Every compute takes it read-only and is `pure`; per-call scratch lives on the stack. One cache serves every thread and every option combination.
189
+ - **One pipeline.** A one-shot call builds a local cache and runs the cached routine, so the two tiers cannot drift apart.
190
+ - **Reproducible bits.** The library's own objects are compiled without link-time optimization. Under `-flto -ffast-math` a kernel inlined into two call sites may round differently in each; without LTO every caller executes the same machine code, and equal inputs give equal bits.
191
+ - **No stops.** Every failure is a status code; nothing in the library calls `error stop`.