benchling-v3-sdk-python 5.0.0__tar.gz → 8.0.0__tar.gz

benchling_v3_sdk_python-8.0.0/PKG-INFO

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+Metadata-Version: 2.1
+Name: benchling-v3-sdk-python
+Version: 8.0.0
+Summary: 
+License: Apache-2.0
+Keywords: benchling,v3,sdk,python,api
+Requires-Python: >=3.10,<4.0
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Operating System :: MacOS
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Operating System :: OS Independent
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Programming Language :: Python :: 3.15
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Typing :: Typed
+Provides-Extra: aiohttp
+Requires-Dist: aiohttp (>=3.14.1,<4) ; (python_version >= "3.10") and (extra == "aiohttp")
+Requires-Dist: httpx (>=0.21.2)
+Requires-Dist: httpx-aiohttp (>=0.1.8,<0.2.0) ; (python_version >= "3.10") and (extra == "aiohttp")
+Requires-Dist: jwcrypto (>=1.5.1,<2.0.0)
+Requires-Dist: pydantic (>=1.9.2)
+Requires-Dist: pydantic-core (>=2.18.2,<3.0.0)
+Requires-Dist: typing_extensions (>=4.0.0)
+Project-URL: Homepage, https://www.benchling.com
+Project-URL: Repository, https://github.com/benchling/v3-rest-sdk-python
+Description-Content-Type: text/markdown
+
+# Benchling Python Library
+
+[![fern shield](https://img.shields.io/badge/%F0%9F%8C%BF-Built%20with%20Fern-brightgreen)](https://buildwithfern.com?utm_source=github&utm_medium=github&utm_campaign=readme&utm_source=https%3A%2F%2Fgithub.com%2Fbenchling%2Fv3-rest-sdk-python)
+[![pypi](https://img.shields.io/pypi/v/benchling-v3-sdk-python)](https://pypi.python.org/pypi/benchling-v3-sdk-python)
+
+The Benchling Python library provides convenient access to the Benchling APIs from Python.
+
+## Table of Contents
+
+- [Installation](#installation)
+- [Reference](#reference)
+- [Usage](#usage)
+- [Environments](#environments)
+- [Async Client](#async-client)
+- [Exception Handling](#exception-handling)
+- [Pagination](#pagination)
+- [Oauth Token Override](#oauth-token-override)
+- [Advanced](#advanced)
+  - [Access Raw Response Data](#access-raw-response-data)
+  - [Retries](#retries)
+  - [Timeouts](#timeouts)
+  - [Custom Client](#custom-client)
+- [Contributing](#contributing)
+
+## Installation
+
+```sh
+pip install benchling-v3-sdk-python
+```
+
+## Reference
+
+A full reference for this library is available [here](https://github.com/benchling/v3-rest-sdk-python/blob/HEAD/./reference.md).
+
+## Usage
+
+Instantiate and use the client with the following:
+
+```python
+from benchling_v3_sdk import Benchling, AaMonomerChemicalStructureInput
+
+client = Benchling(
+    client_id="<clientId>",
+    client_secret="<clientSecret>",
+)
+
+client.aa_monomer.create(
+    chemical_structure=AaMonomerChemicalStructureInput(
+        structure_format="smiles",
+        value="value",
+    ),
+    name="name",
+    natural_analog="A",
+    symbol="symbol",
+)
+```
+
+## Environments
+
+This SDK allows you to configure different environments for API requests.
+
+```python
+from benchling_v3_sdk import Benchling
+from benchling_v3_sdk.environment import BenchlingEnvironment
+
+client = Benchling(
+    environment=BenchlingEnvironment.DEFAULT,
+)
+```
+
+## Async Client
+
+The SDK also exports an `async` client so that you can make non-blocking calls to our API. Note that if you are constructing an Async httpx client class to pass into this client, use `httpx.AsyncClient()` instead of `httpx.Client()` (e.g. for the `httpx_client` parameter of this client).
+
+```python
+import asyncio
+
+from benchling_v3_sdk import AsyncBenchling
+
+client = AsyncBenchling(
+    client_id="<clientId>",
+    client_secret="<clientSecret>",
+)
+
+
+async def main() -> None:
+    await client.aa_monomer.create(
+        chemical_structure=AaMonomerChemicalStructureInput(
+            structure_format="smiles",
+            value="value",
+        ),
+        name="name",
+        natural_analog="A",
+        symbol="symbol",
+    )
+
+
+asyncio.run(main())
+```
+
+## Exception Handling
+
+When the API returns a non-success status code (4xx or 5xx response), a subclass of the following error
+will be thrown.
+
+```python
+from benchling_v3_sdk.core.api_error import ApiError
+
+try:
+    client.aa_monomer.create(...)
+except ApiError as e:
+    print(e.status_code)
+    print(e.body)
+```
+
+## Pagination
+
+Paginated requests will return a `SyncPager` or `AsyncPager`, which can be used as generators for the underlying object.
+
+```python
+from benchling_v3_sdk import Benchling
+
+client = Benchling(
+    client_id="<clientId>",
+    client_secret="<clientSecret>",
+)
+
+client.aa_monomer.list()
+```
+
+```python
+# You can also iterate through pages and access the typed response per page
+pager = client.aa_monomer.list(...)
+for page in pager.iter_pages():
+    print(page.response)  # access the typed response for each page
+    for item in page:
+        print(item)
+```
+
+## Oauth Token Override
+
+This SDK supports two authentication methods: OAuth client credentials flow (automatic token management) or direct bearer token authentication. You can choose between these options when initializing the client:
+
+```python
+from benchling_v3_sdk import Benchling
+
+# Option 1: Direct bearer token (bypass OAuth flow)
+client = Benchling(
+    ...,
+    token="my-pre-generated-bearer-token",
+)
+
+# Option 2: OAuth client credentials flow (automatic token management)
+client = Benchling(
+    ...,
+    client_id="your-client-id",
+    client_secret="your-client-secret",
+)
+```
+
+## Advanced
+
+### Access Raw Response Data
+
+The SDK provides access to raw response data, including headers, through the `.with_raw_response` property.
+The `.with_raw_response` property returns a "raw" client that can be used to access the `.headers` and `.data` attributes.
+
+```python
+from benchling_v3_sdk import Benchling
+
+client = Benchling(...)
+response = client.aa_monomer.with_raw_response.create(...)
+print(response.headers)  # access the response headers
+print(response.status_code)  # access the response status code
+print(response.data)  # access the underlying object
+```
+
+### Retries
+
+The SDK is instrumented with automatic retries with exponential backoff. A request will be retried as long
+as the request is deemed retryable and the number of retry attempts has not grown larger than the configured
+retry limit (default: 2).
+
+Which status codes are retried depends on the `retryStatusCodes` generator configuration:
+
+**`legacy`** (current default): retries on
+- [408](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/408) (Timeout)
+- [409](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/409) (Conflict)
+- [429](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/429) (Too Many Requests)
+- [5XX](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status#server_error_responses) (All server errors, including 500)
+
+**`recommended`**: retries on
+- [408](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/408) (Timeout)
+- [409](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/409) (Conflict)
+- [429](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/429) (Too Many Requests)
+- [502](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/502) (Bad Gateway)
+- [503](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/503) (Service Unavailable)
+- [504](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/504) (Gateway Timeout)
+
+Use the `max_retries` request option to configure this behavior.
+
+```python
+client.aa_monomer.create(..., request_options={
+    "max_retries": 1
+})
+```
+
+### Timeouts
+
+The SDK defaults to a 60 second timeout. You can configure this with a timeout option at the client or request level.
+
+```python
+from benchling_v3_sdk import Benchling
+
+client = Benchling(..., timeout=20.0)
+
+# Override timeout for a specific method
+client.aa_monomer.create(..., request_options={
+    "timeout": 1
+})
+```
+
+### Custom Client
+
+You can override the `httpx` client to customize it for your use-case. Some common use-cases include support for proxies
+and transports.
+
+```python
+import httpx
+from benchling_v3_sdk import Benchling
+
+client = Benchling(
+    ...,
+    httpx_client=httpx.Client(
+        proxy="http://my.test.proxy.example.com",
+        transport=httpx.HTTPTransport(local_address="0.0.0.0"),
+    ),
+)
+```
+
+## Contributing
+
+While we value open-source contributions to this SDK, this library is generated programmatically.
+Additions made directly to this library would have to be moved over to our generation code,
+otherwise they would be overwritten upon the next generated release. Feel free to open a PR as
+a proof of concept, but know that we will not be able to merge it as-is. We suggest opening
+an issue first to discuss with us!
+
+On the other hand, contributions to the README are always very welcome!
+

benchling_v3_sdk_python-8.0.0/pyproject.toml

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+[project]
+name = "benchling-v3-sdk-python"
+dynamic = ["version"]
+
+[tool.poetry]
+name = "benchling-v3-sdk-python"
+version = "8.0.0"
+description = ""
+readme = "README.md"
+authors = []
+keywords = [
+    "benchling",
+    "v3",
+    "sdk",
+    "python",
+    "api"
+]
+license = "Apache-2.0"
+classifiers = [
+    "Intended Audience :: Developers",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
+    "Programming Language :: Python :: 3.15",
+    "Operating System :: OS Independent",
+    "Operating System :: POSIX",
+    "Operating System :: MacOS",
+    "Operating System :: POSIX :: Linux",
+    "Operating System :: Microsoft :: Windows",
+    "Topic :: Software Development :: Libraries :: Python Modules",
+    "Typing :: Typed",
+    "License :: OSI Approved :: Apache Software License"
+]
+packages = [
+    { include = "benchling_v3_sdk", from = "src"}
+]
+
+[tool.poetry.urls]
+Homepage = 'https://www.benchling.com'
+Repository = 'https://github.com/benchling/v3-rest-sdk-python'
+
+[tool.poetry.dependencies]
+python = "^3.10"
+aiohttp = { version = ">=3.14.1,<4", optional = true, python = ">=3.10"}
+httpx = ">=0.21.2"
+httpx-aiohttp = { version = "^0.1.8", optional = true, python = ">=3.10"}
+jwcrypto = ">=1.5.1,<2.0.0"
+pydantic = ">= 1.9.2"
+pydantic-core = ">=2.18.2,<3.0.0"
+typing_extensions = ">= 4.0.0"
+
+[tool.poetry.group.dev.dependencies]
+mypy = "==1.13.0"
+pytest = "^9.0.3"
+pytest-asyncio = "^1.0.0"
+pytest-xdist = "^3.6.1"
+python-dateutil = "^2.9.0"
+types-python-dateutil = "^2.9.0.20240316"
+urllib3 = ">=2.6.3,<3.0.0"
+requests = "^2.33.0"
+types-requests = "^2.33.0"
+python-dotenv = "^1.1.0"
+ruff = "==0.11.5"
+
+[tool.pytest.ini_options]
+testpaths = [ "tests" ]
+asyncio_mode = "auto"
+norecursedirs = [ "src" ]
+markers = [
+    "aiohttp: tests that require httpx_aiohttp to be installed",
+]
+
+[tool.mypy]
+plugins = ["pydantic.mypy"]
+
+[tool.ruff]
+line-length = 120
+
+[tool.ruff.lint]
+select = [
+    "E",  # pycodestyle errors
+    "F",  # pyflakes
+    "I",  # isort
+]
+ignore = [
+    "E402",  # Module level import not at top of file
+    "E501",  # Line too long
+    "E711",  # Comparison to `None` should be `cond is not None`
+    "E712",  # Avoid equality comparisons to `True`; use `if ...:` checks
+    "E721",  # Use `is` and `is not` for type comparisons, or `isinstance()` for insinstance checks
+    "E722",  # Do not use bare `except`
+    "E731",  # Do not assign a `lambda` expression, use a `def`
+    "F821",  # Undefined name
+    "F841"   # Local variable ... is assigned to but never used
+]
+
+[tool.ruff.lint.isort]
+section-order = ["future", "standard-library", "third-party", "first-party"]
+
+# Used by the TID check in .github/workflows/lint.yml. Kept out of the global
+# `select` above since generated code uses relative imports; scoped there to
+# hand-written .fernignore paths.
+[tool.ruff.lint.flake8-tidy-imports]
+ban-relative-imports = "all"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"
+
+[tool.poetry.extras]
+aiohttp=["aiohttp", "httpx-aiohttp"]