benchling-sdk 1.20__tar.gz → 1.21.1__tar.gz

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/PKG-INFO

@@ -1,14 +1,13 @@
 Metadata-Version: 2.1
 Name: benchling-sdk
-Version: 1.20
+Version: 1.21.1
 Summary: SDK for interacting with the Benchling Platform.
 License: Apache-2.0
 Author: Benchling Support
 Author-email: support@benchling.com
-Requires-Python: >=3.8,<4.0
+Requires-Python: >=3.9,<4.0
 Classifier: License :: OSI Approved :: Apache Software License
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
@@ -17,7 +16,7 @@ Provides-Extra: python-jose
 Requires-Dist: PyYAML (>=6.0,<7.0)
 Requires-Dist: attrs (>=20.1.0)
 Requires-Dist: backoff (>=1.10.0,<3)
-Requires-Dist: benchling-api-client (==2.0.338)
+Requires-Dist: benchling-api-client (==2.0.342)
 Requires-Dist: certifi (>=2022.12.7)
 Requires-Dist: cryptography (>=42.0.0) ; extra == "cryptography"
 Requires-Dist: dataclasses-json (>=0.5.2,<0.6.0)

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/apps/helpers/webhook_helpers.py

@@ -1,6 +1,6 @@
 import base64
 from datetime import datetime, timedelta, timezone
-from typing import cast, List, Protocol, Union
+from typing import cast, List, Optional, Protocol, Union
 
 from benchling_api_client.v2.benchling_client import BenchlingApiClient
 import httpx
@@ -12,6 +12,21 @@ from benchling_sdk.helpers.package_helpers import _required_packages_context, Ex
 from benchling_sdk.services.v2.stable.api_service import build_json_response
 
 
+class HeadersMapping(Protocol):
+    """
+    A general type for objects that represent request headers.
+    
+    This can be a dict, or any `Mapping[str, str]`, or an instance of a class like
+    Flask's Headers class which is dict-like to a limited degree.
+    """
+
+    def __contains__(self, key: str) -> bool:
+        pass
+
+    def __getitem__(self, key: str) -> str:
+        pass
+
+
 class WebhookVerificationError(Exception):
     """
     Webhook Verification Error.
@@ -93,7 +108,7 @@ def _production_webhook_jwks(app_definition_id: str) -> str:
 def _retrieve_jwks(
     app_installation_or_definition_id: str,
     jwk_url_provider: Union[JwkUrlProvider, LegacyJwkUrlProvider],
-    httpx_client: httpx.Client = None,
+    httpx_client: Optional[httpx.Client] = None,
 ):
     if httpx_client is None:
         httpx_client = _default_httpx_webhook_client()
@@ -106,8 +121,8 @@ def _retrieve_jwks(
 
 def jwks_by_app(
     app_id: str,
-    httpx_client: httpx.Client = None,
-    jwk_url_provider: LegacyJwkUrlProvider = None,
+    httpx_client: Optional[httpx.Client] = None,
+    jwk_url_provider: Optional[LegacyJwkUrlProvider] = None,
 ) -> jwk.JWKSet:
     """
     Get JWKs by App (Deprecated).
@@ -128,8 +143,8 @@ def jwks_by_app(
 
 def jwks_by_app_definition(
     app_definition_id: str,
-    httpx_client: httpx.Client = None,
-    jwk_url_provider: JwkUrlProvider = None,
+    httpx_client: Optional[httpx.Client] = None,
+    jwk_url_provider: Optional[JwkUrlProvider] = None,
 ) -> jwk.JWKSet:
     """
     Get JWKs for a Benchling App from its global app_definition_id.
@@ -146,7 +161,7 @@ def jwks_by_app_definition(
 
 
 def verify_app_installation(
-    app_id: str, data: str, headers: dict, jwk_function: LegacyGetJwksFunction = None
+    app_id: str, data: str, headers: HeadersMapping, jwk_function: Optional[LegacyGetJwksFunction] = None
 ) -> None:
     """
     Verify a webhook for an app installation (Deprecated).
@@ -162,13 +177,21 @@ def verify_app_installation(
     _verify(app_id, data, headers, jwk_function)
 
 
-def verify(app_definition_id: str, data: str, headers: dict, jwk_function: GetJwksFunction = None) -> None:
+def verify(
+    app_definition_id: str,
+    data: str,
+    headers: HeadersMapping,
+    jwk_function: Optional[GetJwksFunction] = None,
+) -> None:
     """
     Verify a webhook for a Benchling App from its global app_definition_id.
 
     Verifies that a webhook was a valid webhook from Benchling.
     Raises WebhookVerificationError if the webhook could not be verified.
     Resolves JWKs from Benchling with default settings. Pass jwk_function for customization.
+
+    The headers parameter can be a dict, or a dict-like object such as the Headers type
+    from Flask.
     """
     default_jwk_function: GetJwksFunction = jwks_by_app_definition
     _jwk_function: GetJwksFunction = default_jwk_function if jwk_function is None else jwk_function
@@ -196,7 +219,7 @@ def _has_valid_signature(to_verify: str, jwks: jwk.JWKSet, encoded_signatures: L
 def _verify(
     app_installation_or_definition_id: str,
     data: str,
-    headers: dict,
+    headers: HeadersMapping,
     jwk_function: Union[GetJwksFunction, LegacyGetJwksFunction],
 ) -> None:
     _verify_headers_present(headers)
@@ -210,7 +233,7 @@ def _verify(
         raise WebhookVerificationError("No matching signature found")
 
 
-def _der_signatures_from_versioned_signatures(versioned_signatures: str) -> List[str]:
+def _der_signatures_from_versioned_signatures(versioned_signatures: List[str]) -> List[str]:
     """
     Parse and return a list of ders signatures from a single string.
 
@@ -226,7 +249,7 @@ def _der_signatures_from_versioned_signatures(versioned_signatures: str) -> List
     return der_signatures
 
 
-def _verify_headers_present(headers: dict) -> None:
+def _verify_headers_present(headers: HeadersMapping) -> None:
     """
     Verify Headers Present.
 

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/apps/status/framework.py

@@ -5,7 +5,7 @@ from contextlib import AbstractContextManager
 from types import TracebackType
 from typing import cast, Iterable, List, Optional, Protocol, Type, TYPE_CHECKING, Union
 
-from benchling_api_client.v2.stable.types import Unset, UNSET
+from benchling_api_client.v2.stable.types import UNSET, Unset
 
 from benchling_sdk.apps.status.errors import (
     AppUserFacingError,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/auth/client_credentials_oauth2.py

@@ -70,7 +70,7 @@ class ClientCredentialsOAuth2(AuthorizationMethod):
         self,
         client_id: str,
         client_secret: str,
-        token_url: str = None,
+        token_url: Optional[str] = None,
         httpx_client: Optional[httpx.Client] = None,
     ):
         """

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/helpers/serialization_helpers.py

@@ -1,7 +1,7 @@
 from dataclasses import dataclass
 from typing import Any, Dict, Iterable, Optional, Type, TypeVar, Union
 
-from benchling_api_client.v2.types import Unset, UNSET
+from benchling_api_client.v2.types import UNSET, Unset
 from dataclasses_json import DataClassJsonMixin
 
 from benchling_sdk.models import CustomFields, Field, Fields, SchemaFieldsQueryParam

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/aa_sequence_service.py

@@ -111,7 +111,7 @@ class AaSequenceService(BaseService):
         creator_ids: Optional[Iterable[str]] = None,
         sort: Optional[ListAASequencesSort] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         author_idsany_of: Optional[Iterable[str]] = None,
         returning: Optional[Iterable[str]] = None,
     ) -> Response[AaSequencesPaginatedList]:

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/app_service.py

@@ -389,7 +389,7 @@ class AppService(BaseService):
         enabled: Optional[ListAppCanvasesEnabled] = None,
         archive_reason: Optional[str] = None,
         sort: Optional[Union[str, ListAppCanvasesSort]] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         page_size: Optional[int] = None,
     ) -> Response[AppCanvasesPaginatedList]:
         response = list_app_canvases.sync_detailed(
@@ -555,7 +555,7 @@ class AppService(BaseService):
         modified_at_gte: Optional[datetime] = None,
         sort: Optional[ListAppSessionsSort] = None,
         returning: Optional[Iterable[str]] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         page_size: Optional[int] = None,
     ) -> Response[AppSessionsPaginatedList]:
         response = list_app_sessions.sync_detailed(

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/assay_result_service.py

@@ -71,7 +71,7 @@ class AssayResultService(BaseService):
         max_created_time: Optional[int] = None,
         entity_ids: Optional[Iterable[str]] = None,
         assay_run_ids: Optional[Iterable[str]] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         page_size: Optional[int] = None,
         ids: Optional[Iterable[str]] = None,
         storage_ids: Optional[Iterable[str]] = None,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/assay_run_service.py

@@ -67,7 +67,7 @@ class AssayRunService(BaseService):
         schema_id: str,
         min_created_time: Optional[int] = None,
         max_created_time: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         page_size: Optional[int] = None,
         ids: Optional[Iterable[str]] = None,
     ) -> Response[AssayRunsPaginatedList]:
@@ -152,7 +152,7 @@ class AssayRunService(BaseService):
         self,
         assay_run_id: str,
         modified_at: Optional[str] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[AutomationFileInputsPaginatedList]:
         response = list_automation_input_generators.sync_detailed(
             client=self.client,
@@ -186,7 +186,7 @@ class AssayRunService(BaseService):
     def _automation_output_processors_page(
         self,
         assay_run_id: str,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[AutomationOutputProcessorsPaginatedList]:
         """Deprecated in favor of lab_automation.automation_output_processors."""
         log_deprecation(

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/codon_usage_table_service.py

@@ -30,7 +30,7 @@ class CodonUsageTableService(BaseService):
         name_includes: Optional[str] = None,
         names_any_of: Optional[Iterable[str]] = [],
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[CodonUsageTablesPaginatedList]:
         response = list_codon_usage_tables.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/custom_entity_service.py

@@ -93,7 +93,7 @@ class CustomEntityService(BaseService):
         creator_ids: Optional[Iterable[str]] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         author_idsany_of: Optional[Iterable[str]] = None,
         returning: Optional[Iterable[str]] = None,
     ) -> Response[CustomEntitiesPaginatedList]:

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/dna_alignments_service.py

@@ -66,7 +66,7 @@ class DnaAlignmentsService(BaseService):
         sequence_ids: Optional[List[str]] = None,
         sort: Optional[ListDNAAlignmentsSort] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[DnaAlignmentsPaginatedList]:
         response = list_dna_alignments.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/dna_oligo_service.py

@@ -89,7 +89,7 @@ class DnaOligoService(BaseService):
         schema_fields: Optional[Dict[str, Any]] = None,
         creator_ids: Optional[Iterable[str]] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         author_idsany_of: Optional[Iterable[str]] = None,
         returning: Optional[Iterable[str]] = None,
         custom_notation_id: Optional[str] = None,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/dna_sequence_service.py

@@ -109,7 +109,7 @@ class DnaSequenceService(BaseService):
         creator_ids: Optional[Iterable[str]] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         author_idsany_of: Optional[Iterable[str]] = None,
         returning: Optional[Iterable[str]] = None,
     ) -> Response[DnaSequencesPaginatedList]:

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/enzyme_service.py

@@ -29,7 +29,7 @@ class EnzymeService(BaseService):
         name_includes: Optional[str] = None,
         names_any_of: Optional[Iterable[str]] = [],
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[EnzymesPaginatedList]:
         response = list_enzymes.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/event_service.py

@@ -29,7 +29,7 @@ class EventService(BaseService):
         event_types: Optional[str] = None,
         poll: Optional[bool] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[EventsPaginatedList]:
         response = list_events.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/feature_library_service.py

@@ -73,7 +73,7 @@ class FeatureLibraryService(BaseService):
         sort: Optional[ListFeatureLibrariesSort] = None,
         page_size: Optional[int] = None,
         returning: Optional[Iterable[str]] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[FeatureLibrariesPaginatedList]:
         response = list_feature_libraries.sync_detailed(
             client=self.client,
@@ -166,7 +166,7 @@ class FeatureLibraryService(BaseService):
     def _features_page(
         self,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         name: Optional[str] = None,
         ids: Optional[Iterable[str]] = None,
         namesany_ofcase_sensitive: Optional[Iterable[str]] = None,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/lab_automation_service.py

@@ -131,7 +131,7 @@ class LabAutomationService(BaseService):
         automation_file_config_name: Optional[str],
         archive_reason: Optional[str],
         modified_at: Optional[str],
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[AutomationOutputProcessorsPaginatedList]:
         response = list_automation_output_processors.sync_detailed(
             client=self.client,
@@ -147,8 +147,8 @@ class LabAutomationService(BaseService):
     def automation_output_processors(
         self,
         assay_run_id: str,
-        automation_file_config_name: str = None,
-        archive_reason: str = None,
+        automation_file_config_name: Optional[str] = None,
+        archive_reason: Optional[str] = None,
         modified_at: Optional[str] = None,
     ) -> PageIterator[AutomationOutputProcessor]:
         """

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/mixture_service.py

@@ -83,7 +83,7 @@ class MixtureService(BaseService):
         names_any_of_case_sensitive: Optional[Iterable[str]] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         author_idsany_of: Optional[Iterable[str]] = None,
     ) -> Response[MixturesPaginatedList]:
         response = list_mixtures.sync_detailed(

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/molecule_service.py

@@ -84,7 +84,7 @@ class MoleculeService(BaseService):
         names_any_of: Optional[Iterable[str]] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         author_idsany_of: Optional[Iterable[str]] = None,
         chemical_substructuremol: Optional[str] = None,
         chemical_substructuresmiles: Optional[str] = None,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/monomer_service.py

@@ -41,7 +41,7 @@ class MonomerService(BaseService):
     def _list_page(
         self,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         returning: Optional[Iterable[str]] = None,
     ) -> Response[MonomersPaginatedList]:
         response = list_monomers.sync_detailed(

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/nucleotide_alignments_service.py

@@ -58,7 +58,7 @@ class NucleotideAlignmentsService(BaseService):
         sequence_ids: Optional[List[str]] = None,
         sort: Optional[ListNucleotideAlignmentsSort] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[NucleotideAlignmentsPaginatedList]:
         response = list_nucleotide_alignments.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/oligo_service.py

@@ -95,7 +95,7 @@ class OligoService(BaseService):
         schema_fields: Optional[Dict[str, Any]] = None,
         creator_ids: Optional[Iterable[str]] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         returning: Optional[Iterable[str]] = None,
     ) -> Response[OligosPaginatedList]:
         """Deprecate in favor of dna_oligos._dna_oligos_page or rna_oligos._rna_oligos_page."""

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/request_service.py

@@ -69,7 +69,7 @@ class RequestService(BaseService):
         request_status: Optional[RequestStatus] = None,
         min_created_time: Optional[int] = None,
         max_created_time: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         page_size: Optional[int] = None,
         returning: Optional[Iterable[str]] = None,
     ) -> Response[RequestsPaginatedList]:
@@ -201,7 +201,7 @@ class RequestService(BaseService):
         self,
         entry_id: str,
         modified_at: Optional[str] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         page_size: Optional[int] = None,
     ) -> Response[RequestFulfillmentsPaginatedList]:
         response = list_request_fulfillments.sync_detailed(

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/rna_oligo_service.py

@@ -98,7 +98,7 @@ class RnaOligoService(BaseService):
         schema_fields: Optional[Dict[str, Any]] = None,
         creator_ids: Optional[Iterable[str]] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         author_idsany_of: Optional[Iterable[str]] = None,
         returning: Optional[Iterable[str]] = None,
         custom_notation_id: Optional[str] = None,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/rna_sequence_service.py

@@ -104,7 +104,7 @@ class RnaSequenceService(BaseService):
         creator_ids: Optional[Iterable[str]] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
         author_idsany_of: Optional[Iterable[str]] = None,
         returning: Optional[Iterable[str]] = None,
         custom_notation_id: Optional[str] = None,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/workflow_flowchart_service.py

@@ -44,7 +44,7 @@ class WorkflowFlowchartService(BaseService):
         ids: Optional[Iterable[str]] = None,
         created_at: Optional[datetime.date] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[WorkflowFlowchartPaginatedList]:
         response = list_workflow_flowcharts.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/workflow_output_service.py

@@ -81,7 +81,7 @@ class WorkflowOutputService(BaseService):
         linked_item_ids_none_of: Optional[Iterable[str]] = None,
         archive_reason: Optional[str] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[WorkflowOutputsPaginatedList]:
         response = list_workflow_outputs.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/workflow_task_group_service.py

@@ -70,7 +70,7 @@ class WorkflowTaskGroupService(BaseService):
         display_ids: Optional[Iterable[str]] = None,
         archive_reason: Optional[str] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[WorkflowTaskGroupsPaginatedList]:
         response = list_workflow_task_groups.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/benchling_sdk/services/v2/stable/workflow_task_service.py

@@ -92,7 +92,7 @@ class WorkflowTaskService(BaseService):
         linked_item_ids_none_of: Optional[Iterable[str]] = None,
         archive_reason: Optional[str] = None,
         page_size: Optional[int] = None,
-        next_token: NextToken = None,
+        next_token: Optional[NextToken] = None,
     ) -> Response[WorkflowTasksPaginatedList]:
         response = list_workflow_tasks.sync_detailed(
             client=self.client,

{benchling_sdk-1.20 → benchling_sdk-1.21.1}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "benchling-sdk"
-version = "1.20"   # NOTE: This version number is ignored and does not correspond to releases (see README)
+version = "1.21.1"   # NOTE: This version number is ignored and does not correspond to releases (see README)
 description = "SDK for interacting with the Benchling Platform."
 authors = ["Benchling Support <support@benchling.com>"]
 packages = [{include = "benchling_sdk"}]
@@ -18,7 +18,7 @@ testpaths = [
 ]
 
 [tool.poetry.dependencies]
-python = "^3.8"
+python = "^3.9"
 backoff = ">=1.10.0, <3"
 dataclasses-json = "^0.5.2"
 httpx = ">=0.23.0"
@@ -28,7 +28,7 @@ PyYAML = "^6.0"
 # See issue: https://github.com/giampaolo/psutil/issues/2165
 psutil = {version = "^5.9.4", python = "^3.11" }
 jwcrypto = "^1.5.1"
-benchling-api-client = "2.0.338"
+benchling-api-client = "2.0.342"
 # Minimum version due to vulnerability in 2022.9.24
 certifi = ">=2022.12.7"
 # Cryptography extras - see ExtrasPackage.CRYPTOGRAPHY
@@ -44,19 +44,16 @@ cryptography = ["cryptography"]
 python-jose = ["python-jose"]
 
 [tool.poetry.group.dev.dependencies]
-black = "^22.3.0"
-isort = "^5.10.1"
 pre-commit = "^2.6.0"
 ipython = "^7.16.1"
-mypy = "^0.960"
-flake8 = "^3.8.3"
+mypy = "^1.13"
+ruff = "^0.7.3"
 taskipy = "^1.6.0"
 Jinja2 = "^3.1.2"
 Markdown = "3.3.4" # Errors in Markdown 3.3.5 related to TypeError: entry_points() got an unexpected keyword argument 'group'
 toml = "^0.10.2"
 packaging = "^20.9"
 coverage = "^5.5"
-flake8-docstrings = "^1.6.0"
 ddt = "1.4.4"
 pytest = "^7.1.2"
 beautifulsoup4 = "4.10.0"
@@ -67,10 +64,8 @@ boto3 = "^1.24.67"
 boto3-stubs = {extras = ["ssm"], version = "1.24.67"}
 types-s3transfer = "0.6.0.post4"
 botocore-stubs = "1.28.4"
-# Used by flake8, version pinning is because v5 removes a deprecated call flake is currently using.
-importlib-metadata = "^4.13.0"
 sphinx-multiversion-pre-post-build = "^0.2.4"
-time-machine = "^2.8.2"
+time-machine = "^2.15.0"  # change to >=2.15.0 once we drop Python 3.8 support
 python-jose = "^3.3.0"
 gitpython = "^3.1.31"
 pytest-rerunfailures = "^12.0"
@@ -81,29 +76,92 @@ unit = "pytest -s tests/unit/"
 integration = "pytest -vv --reruns 3 --reruns-delay 1 -s tests/integration/"
 # Separate than unit tests because they intentionally take awhile but still mock Benchling
 retry_strategy_tests = "pytest -vv --reruns 3 --reruns-delay 1 -s tests/retries/"
+format = "ruff check . --fix"
+lint = "ruff check . && mypy ."
 models = "task generate_models && task sort_models && task format_models"
 generate_models = "python3 -m regenerate_models"
 format_models = "black benchling_sdk/models"
-sort_models = "isort benchling_sdk/models"
+sort_models = "ruff check benchling_sdk/models --fix"
 regenerate_docs = "./scripts/regenerate_docs.sh"
 regenerate_doc_sources = "sphinx-apidoc --module-first -H benchling-sdk -e -f -o sphinx/source . tests* regenerate* > stdout.log 2> stderr.log"
 check_docs = "python3 -m regenerate_docs --check"
 
-[tool.black]
-line-length=110
+[tool.ruff]
+target-version = "py39"
+line-length = 110
+exclude = [
+    ".git",
+    ".mypy_cache",
+    ".venv",
+]
+
+[tool.ruff.lint]
+select = ["D", "E", "F", "I", "UP", "B", "PL", "RUF"]
+ignore = [
+    "D100",  # don't require docstring for modules
+    "D104",  # don't require docstring for public packages
+    "D105",  # don't require docstring for magic methods
+    "D203",  # don't require blank line before class docstring
+    "D211",  # no-blank-line-before-class
+    "D212",  # multi-line-summary-first-line
+    "D213",  # multi-line-summary-second-line
+    "D413",  # don't require blank line after docstring section
+
+    "E501",
+    "PLR0913",
+    "PLR2004",
+
+    # rules that we can unignore once we've made some code updates:
+    "B006",
+    "B007",
+    "B008",
+    "B009",
+    "B010",
+    "B018",
+    "B028",
+    "B904",
+    "E721",
+    "E731",
+    "PLR0911",
+    "PLW2901",
+    "RUF002",
+    "RUF005",
+    "RUF012",
+    "RUF019",
+    "RUF100",
+    "UP004",
+    "UP006",
+    "UP007",
+    "UP012",
+    "UP015",
+    "UP018",
+    "UP033",
+    "UP037",
+    "UP035",
+]
+
+[tool.ruff.lint.isort]
+combine-as-imports=true
+default-section="third-party"
+force-sort-within-sections=true
+known-first-party=["benchling_sdk"]
+known-third-party=["attr", "backoff", "benchling_api_client", "benchling_jira_api", "boto3", "bs4", "cryptography", "dataclasses_json", "httpx", "jinja2", "jose", "jwcrypto", "ordered_set", "pytest", "time_machine", "util", "yaml"]
+order-by-type=false
 
-[tool.isort]
-combine_as_imports=true
-default_section="THIRDPARTY"
-force_alphabetical_sort_within_sections=true
-force_sort_within_sections=true
-include_trailing_comma=true
-known_first_party=["benchling_sdk"]
-known_third_party=["attr", "backoff", "benchling_api_client", "benchling_jira_api", "boto3", "bs4", "cryptography", "dataclasses_json", "httpx", "jinja2", "jose", "jwcrypto", "ordered_set", "pytest", "time_machine", "util", "yaml"]
-line_length=110
-multi_line_output=3
-order_by_type=false
-skip = ["tests/packaged/run_smoke_test.py"]
+[tool.ruff.lint.per-file-ignores]
+"tests/*" = [
+    "D100", "D101", "D102", "D104", "D106", "D107",  # missing docstrings
+    "PLR2004",
+]
+"tests/packaged/run_smoke_test.py" = [
+    "D103",  # missing docstrings
+]
+# Ignore imperative mood for some class docstrings
+"benchling_sdk/benchling.py" = ["D401"]
+"benchling_sdk/services/v2/v2_stable_service.py" = ["D401"]
+"benchling_sdk/services/v2/stable/assay_run_service.py" = ["D401"]
+# Scripts that aren't published
+"regenerate_docs.py" = [ "D103", "D205", "D400", "D415" ]
 
 [build-system]
 requires = ["poetry>=1.2"]