benchling-sdk 1.17.1__tar.gz → 1.18.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/PKG-INFO +2 -2
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/config/helpers.py +32 -3
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/config/mock_config.py +2 -2
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/benchling.py +12 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/models/__init__.py +56 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/models/webhooks/v0/__init__.py +12 -0
- benchling_sdk-1.18.1/benchling_sdk/services/v2/alpha/v2_alpha_assembly_service.py +62 -0
- benchling_sdk-1.18.1/benchling_sdk/services/v2/beta/v2_beta_analysis_service.py +46 -0
- benchling_sdk-1.18.1/benchling_sdk/services/v2/beta/v2_beta_app_definition_service.py +45 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/beta/v2_beta_app_service.py +1 -1
- benchling_sdk-1.18.1/benchling_sdk/services/v2/beta/v2_beta_audit_service.py +41 -0
- benchling_sdk-1.18.1/benchling_sdk/services/v2/beta/v2_beta_entry_service.py +35 -0
- benchling_sdk-1.18.1/benchling_sdk/services/v2/stable/instrument_query_service.py +28 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/v2_alpha_service.py +15 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/v2_beta_service.py +43 -1
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/v2_stable_service.py +14 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/pyproject.toml +2 -2
- benchling_sdk-1.17.1/benchling_sdk/services/v2/beta/v2_beta_entry_service.py +0 -30
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/LICENSE +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/README.md +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/canvas/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/canvas/errors.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/canvas/framework.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/canvas/types.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/config/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/config/cryptography_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/config/decryption_provider.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/config/errors.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/config/framework.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/config/types.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/framework.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/helpers/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/helpers/manifest_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/helpers/webhook_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/status/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/status/errors.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/status/framework.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/status/helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/status/types.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/apps/types.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/auth/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/auth/api_key_auth.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/auth/bearer_token_auth.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/auth/client_credentials_oauth2.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/docs/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/docs/__main__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/errors.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/client_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/constants.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/decorators.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/file_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/logging_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/package_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/pagination_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/response_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/retry_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/serialization_helpers.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/helpers/transaction_manager.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/models/webhooks/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/py.typed +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/alpha/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/alpha/v2_alpha_app_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/base_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/beta/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/beta/v2_beta_collaboration_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/beta/v2_beta_data_frame_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/beta/v2_beta_folder_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/beta/v2_beta_project_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/beta/v2_beta_worklist_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/__init__.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/aa_sequence_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/api_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/app_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/assay_result_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/assay_run_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/blob_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/box_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/codon_usage_table_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/container_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/custom_entity_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/custom_notation_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/dna_alignments_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/dna_oligo_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/dna_sequence_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/dropdown_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/entity_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/entry_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/enzyme_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/event_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/export_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/feature_library_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/folder_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/inventory_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/lab_automation_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/label_template_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/location_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/mixture_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/molecule_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/monomer_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/nucleotide_alignments_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/oligo_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/organization_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/plate_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/printer_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/project_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/registry_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/request_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/rna_oligo_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/rna_sequence_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/schema_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/task_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/team_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/user_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/warehouse_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/workflow_flowchart_config_version_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/workflow_flowchart_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/workflow_output_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/workflow_task_group_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2/stable/workflow_task_service.py +0 -0
- {benchling_sdk-1.17.1 → benchling_sdk-1.18.1}/benchling_sdk/services/v2_service.py +0 -0
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
2
2
|
Name: benchling-sdk
|
3
|
-
Version: 1.
|
3
|
+
Version: 1.18.1
|
4
4
|
Summary: SDK for interacting with the Benchling Platform.
|
5
5
|
License: Apache-2.0
|
6
6
|
Author: Benchling Support
|
@@ -17,7 +17,7 @@ Provides-Extra: python-jose
|
|
17
17
|
Requires-Dist: PyYAML (>=6.0,<7.0)
|
18
18
|
Requires-Dist: attrs (>=20.1.0)
|
19
19
|
Requires-Dist: backoff (>=1.10.0,<3)
|
20
|
-
Requires-Dist: benchling-api-client (==2.0.
|
20
|
+
Requires-Dist: benchling-api-client (==2.0.336)
|
21
21
|
Requires-Dist: certifi (>=2022.12.7)
|
22
22
|
Requires-Dist: cryptography (>=42.0.0) ; extra == "cryptography"
|
23
23
|
Requires-Dist: dataclasses-json (>=0.5.2,<0.6.0)
|
@@ -1,6 +1,9 @@
|
|
1
1
|
from datetime import datetime
|
2
|
-
from
|
2
|
+
from enum import Enum
|
3
|
+
from functools import lru_cache
|
4
|
+
from typing import cast, List, Optional, Union
|
3
5
|
|
6
|
+
from benchling_api_client.v2.beta.extensions import Enums
|
4
7
|
from benchling_api_client.v2.beta.models.base_manifest_config import BaseManifestConfig
|
5
8
|
from benchling_api_client.v2.beta.models.dropdown_dependency import DropdownDependency
|
6
9
|
from benchling_api_client.v2.beta.models.dropdown_dependency_types import DropdownDependencyTypes
|
@@ -14,7 +17,6 @@ from benchling_api_client.v2.beta.models.manifest_scalar_config import ManifestS
|
|
14
17
|
from benchling_api_client.v2.beta.models.manifest_text_scalar_config import ManifestTextScalarConfig
|
15
18
|
from benchling_api_client.v2.beta.models.resource_dependency import ResourceDependency
|
16
19
|
from benchling_api_client.v2.beta.models.resource_dependency_types import ResourceDependencyTypes
|
17
|
-
from benchling_api_client.v2.beta.models.scalar_config_types import ScalarConfigTypes
|
18
20
|
from benchling_api_client.v2.beta.models.schema_dependency import SchemaDependency
|
19
21
|
from benchling_api_client.v2.beta.models.schema_dependency_subtypes import SchemaDependencySubtypes
|
20
22
|
from benchling_api_client.v2.beta.models.schema_dependency_types import SchemaDependencyTypes
|
@@ -44,6 +46,33 @@ class _UnsupportedSubTypeError(Exception):
|
|
44
46
|
pass
|
45
47
|
|
46
48
|
|
49
|
+
class _ScalarConfigTypes(Enums.KnownString):
|
50
|
+
"""Enum type copied from an earlier version of benchling-api-client, for internal use only.
|
51
|
+
|
52
|
+
See BNCH-108704.
|
53
|
+
"""
|
54
|
+
|
55
|
+
TEXT = "text"
|
56
|
+
FLOAT = "float"
|
57
|
+
INTEGER = "integer"
|
58
|
+
BOOLEAN = "boolean"
|
59
|
+
DATE = "date"
|
60
|
+
DATETIME = "datetime"
|
61
|
+
SECURE_TEXT = "secure_text"
|
62
|
+
JSON = "json"
|
63
|
+
|
64
|
+
def __str__(self) -> str:
|
65
|
+
return str(self.value)
|
66
|
+
|
67
|
+
@staticmethod
|
68
|
+
@lru_cache(maxsize=None)
|
69
|
+
def of_unknown(val: str) -> "_ScalarConfigTypes":
|
70
|
+
if not isinstance(val, str):
|
71
|
+
raise ValueError(f"Value of _ScalarConfigTypes must be a string (encountered: {val})")
|
72
|
+
newcls = Enum("_ScalarConfigTypes", {"_UNKNOWN": val}, type=Enums.UnknownString) # type: ignore
|
73
|
+
return cast(_ScalarConfigTypes, getattr(newcls, "_UNKNOWN"))
|
74
|
+
|
75
|
+
|
47
76
|
def _field_definitions_from_dependency(
|
48
77
|
dependency: Union[
|
49
78
|
EntitySchemaDependency,
|
@@ -109,7 +138,7 @@ def _fix_element_definition_deserialization(
|
|
109
138
|
return DropdownDependency.from_dict(element.value)
|
110
139
|
elif element_type in [member.value for member in ResourceDependencyTypes]:
|
111
140
|
return ResourceDependency.from_dict(element.value)
|
112
|
-
elif element_type in [member.value for member in
|
141
|
+
elif element_type in [member.value for member in _ScalarConfigTypes]:
|
113
142
|
return type(element_type).from_dict(element.value)
|
114
143
|
raise NotImplementedError(f"No array deserialization fix for {element}")
|
115
144
|
return element
|
@@ -24,7 +24,6 @@ from benchling_api_client.v2.beta.models.manifest_secure_text_scalar_config impo
|
|
24
24
|
)
|
25
25
|
from benchling_api_client.v2.beta.models.manifest_text_scalar_config import ManifestTextScalarConfig
|
26
26
|
from benchling_api_client.v2.beta.models.resource_dependency import ResourceDependency
|
27
|
-
from benchling_api_client.v2.beta.models.scalar_config_types import ScalarConfigTypes
|
28
27
|
from benchling_api_client.v2.beta.models.schema_dependency import SchemaDependency
|
29
28
|
from benchling_api_client.v2.beta.models.schema_dependency_subtypes import (
|
30
29
|
SchemaDependencySubtypes as SchemaDependencySubtypesBeta,
|
@@ -41,6 +40,7 @@ from benchling_sdk.apps.config.helpers import (
|
|
41
40
|
_enum_from_dependency,
|
42
41
|
_field_definitions_from_dependency,
|
43
42
|
_options_from_dependency,
|
43
|
+
_ScalarConfigTypes,
|
44
44
|
_subtype_from_entity_schema_dependency,
|
45
45
|
_workflow_task_schema_output_from_dependency,
|
46
46
|
datetime_config_value_to_str,
|
@@ -603,7 +603,7 @@ def _mock_scalar_value(
|
|
603
603
|
f"Unable to mock scalar value for unsupported dependency type {dependency}"
|
604
604
|
)
|
605
605
|
# These types should be equivalent and this appeases MyPy
|
606
|
-
scalar_type =
|
606
|
+
scalar_type = _ScalarConfigTypes(dependency.type)
|
607
607
|
if _is_scalar_with_enum(dependency):
|
608
608
|
return _mock_scalar_with_enum(dependency)
|
609
609
|
elif scalar_type == scalar_type.BOOLEAN:
|
@@ -35,6 +35,7 @@ if TYPE_CHECKING:
|
|
35
35
|
from benchling_sdk.services.v2.stable.export_service import ExportService
|
36
36
|
from benchling_sdk.services.v2.stable.feature_library_service import FeatureLibraryService
|
37
37
|
from benchling_sdk.services.v2.stable.folder_service import FolderService
|
38
|
+
from benchling_sdk.services.v2.stable.instrument_query_service import InstrumentQueryService
|
38
39
|
from benchling_sdk.services.v2.stable.inventory_service import InventoryService
|
39
40
|
from benchling_sdk.services.v2.stable.lab_automation_service import LabAutomationService
|
40
41
|
from benchling_sdk.services.v2.stable.label_template_service import LabelTemplateService
|
@@ -461,6 +462,17 @@ class Benchling(object):
|
|
461
462
|
"""
|
462
463
|
return self.v2.stable.folders
|
463
464
|
|
465
|
+
@property
|
466
|
+
def instrument_queries(self) -> InstrumentQueryService:
|
467
|
+
"""
|
468
|
+
Instrument Queries.
|
469
|
+
|
470
|
+
Instrument Queries are used to query the instrument service.
|
471
|
+
|
472
|
+
See https://benchling.com/api/reference#/Instrument%20Queries
|
473
|
+
"""
|
474
|
+
return self.v2.stable.instrument_queries
|
475
|
+
|
464
476
|
@property
|
465
477
|
def inventory(self) -> InventoryService:
|
466
478
|
"""
|
@@ -527,6 +527,8 @@ __all__ = [
|
|
527
527
|
"EventBaseSchema",
|
528
528
|
"EventsPaginatedList",
|
529
529
|
"ExecuteSampleGroups",
|
530
|
+
"ExperimentalWellRole",
|
531
|
+
"ExperimentalWellRolePrimaryRole",
|
530
532
|
"ExportAuditLogAsyncTask",
|
531
533
|
"ExportAuditLogAsyncTaskResponse",
|
532
534
|
"ExportItemRequest",
|
@@ -592,6 +594,9 @@ __all__ = [
|
|
592
594
|
"IngredientMeasurementUnits",
|
593
595
|
"IngredientWriteParams",
|
594
596
|
"InitialTable",
|
597
|
+
"InstrumentQuery",
|
598
|
+
"InstrumentQueryParams",
|
599
|
+
"InstrumentQueryValues",
|
595
600
|
"IntegerAppConfigItem",
|
596
601
|
"IntegerAppConfigItemType",
|
597
602
|
"IntegerFieldDefinition",
|
@@ -1015,6 +1020,7 @@ __all__ = [
|
|
1015
1020
|
"WellOrInaccessibleResource",
|
1016
1021
|
"WellResourceType",
|
1017
1022
|
"WorkflowEndNodeDetails",
|
1023
|
+
"WorkflowEndNodeDetailsNodeType",
|
1018
1024
|
"WorkflowFlowchart",
|
1019
1025
|
"WorkflowFlowchartConfigSummary",
|
1020
1026
|
"WorkflowFlowchartConfigVersion",
|
@@ -1032,6 +1038,7 @@ __all__ = [
|
|
1032
1038
|
"WorkflowOutputCreatedEvent",
|
1033
1039
|
"WorkflowOutputCreatedEventEventType",
|
1034
1040
|
"WorkflowOutputNodeDetails",
|
1041
|
+
"WorkflowOutputNodeDetailsNodeType",
|
1035
1042
|
"WorkflowOutputSchema",
|
1036
1043
|
"WorkflowOutputSummary",
|
1037
1044
|
"WorkflowOutputUpdate",
|
@@ -1046,8 +1053,10 @@ __all__ = [
|
|
1046
1053
|
"WorkflowOutputsUnarchive",
|
1047
1054
|
"WorkflowPatch",
|
1048
1055
|
"WorkflowRootNodeDetails",
|
1056
|
+
"WorkflowRootNodeDetailsNodeType",
|
1049
1057
|
"WorkflowRouterFunction",
|
1050
1058
|
"WorkflowRouterNodeDetails",
|
1059
|
+
"WorkflowRouterNodeDetailsNodeType",
|
1051
1060
|
"WorkflowSample",
|
1052
1061
|
"WorkflowSampleList",
|
1053
1062
|
"WorkflowStage",
|
@@ -1085,6 +1094,7 @@ __all__ = [
|
|
1085
1094
|
"WorkflowTaskGroupsPaginatedList",
|
1086
1095
|
"WorkflowTaskGroupsUnarchive",
|
1087
1096
|
"WorkflowTaskNodeDetails",
|
1097
|
+
"WorkflowTaskNodeDetailsNodeType",
|
1088
1098
|
"WorkflowTaskSchema",
|
1089
1099
|
"WorkflowTaskSchemaBase",
|
1090
1100
|
"WorkflowTaskSchemaExecutionType",
|
@@ -1633,6 +1643,8 @@ if TYPE_CHECKING:
|
|
1633
1643
|
import benchling_api_client.v2.stable.models.event_base_schema
|
1634
1644
|
import benchling_api_client.v2.stable.models.events_paginated_list
|
1635
1645
|
import benchling_api_client.v2.stable.models.execute_sample_groups
|
1646
|
+
import benchling_api_client.v2.stable.models.experimental_well_role
|
1647
|
+
import benchling_api_client.v2.stable.models.experimental_well_role_primary_role
|
1636
1648
|
import benchling_api_client.v2.stable.models.export_audit_log_async_task
|
1637
1649
|
import benchling_api_client.v2.stable.models.export_audit_log_async_task_response
|
1638
1650
|
import benchling_api_client.v2.stable.models.export_item_request
|
@@ -1698,6 +1710,9 @@ if TYPE_CHECKING:
|
|
1698
1710
|
import benchling_api_client.v2.stable.models.ingredient_measurement_units
|
1699
1711
|
import benchling_api_client.v2.stable.models.ingredient_write_params
|
1700
1712
|
import benchling_api_client.v2.stable.models.initial_table
|
1713
|
+
import benchling_api_client.v2.stable.models.instrument_query
|
1714
|
+
import benchling_api_client.v2.stable.models.instrument_query_params
|
1715
|
+
import benchling_api_client.v2.stable.models.instrument_query_values
|
1701
1716
|
import benchling_api_client.v2.stable.models.integer_app_config_item
|
1702
1717
|
import benchling_api_client.v2.stable.models.integer_app_config_item_type
|
1703
1718
|
import benchling_api_client.v2.stable.models.integer_field_definition
|
@@ -2121,6 +2136,7 @@ if TYPE_CHECKING:
|
|
2121
2136
|
import benchling_api_client.v2.stable.models.well_or_inaccessible_resource
|
2122
2137
|
import benchling_api_client.v2.stable.models.well_resource_type
|
2123
2138
|
import benchling_api_client.v2.stable.models.workflow_end_node_details
|
2139
|
+
import benchling_api_client.v2.stable.models.workflow_end_node_details_node_type
|
2124
2140
|
import benchling_api_client.v2.stable.models.workflow_flowchart
|
2125
2141
|
import benchling_api_client.v2.stable.models.workflow_flowchart_config_summary
|
2126
2142
|
import benchling_api_client.v2.stable.models.workflow_flowchart_config_version
|
@@ -2138,6 +2154,7 @@ if TYPE_CHECKING:
|
|
2138
2154
|
import benchling_api_client.v2.stable.models.workflow_output_created_event
|
2139
2155
|
import benchling_api_client.v2.stable.models.workflow_output_created_event_event_type
|
2140
2156
|
import benchling_api_client.v2.stable.models.workflow_output_node_details
|
2157
|
+
import benchling_api_client.v2.stable.models.workflow_output_node_details_node_type
|
2141
2158
|
import benchling_api_client.v2.stable.models.workflow_output_schema
|
2142
2159
|
import benchling_api_client.v2.stable.models.workflow_output_summary
|
2143
2160
|
import benchling_api_client.v2.stable.models.workflow_output_update
|
@@ -2152,8 +2169,10 @@ if TYPE_CHECKING:
|
|
2152
2169
|
import benchling_api_client.v2.stable.models.workflow_outputs_unarchive
|
2153
2170
|
import benchling_api_client.v2.stable.models.workflow_patch
|
2154
2171
|
import benchling_api_client.v2.stable.models.workflow_root_node_details
|
2172
|
+
import benchling_api_client.v2.stable.models.workflow_root_node_details_node_type
|
2155
2173
|
import benchling_api_client.v2.stable.models.workflow_router_function
|
2156
2174
|
import benchling_api_client.v2.stable.models.workflow_router_node_details
|
2175
|
+
import benchling_api_client.v2.stable.models.workflow_router_node_details_node_type
|
2157
2176
|
import benchling_api_client.v2.stable.models.workflow_sample
|
2158
2177
|
import benchling_api_client.v2.stable.models.workflow_sample_list
|
2159
2178
|
import benchling_api_client.v2.stable.models.workflow_stage
|
@@ -2191,6 +2210,7 @@ if TYPE_CHECKING:
|
|
2191
2210
|
import benchling_api_client.v2.stable.models.workflow_task_groups_paginated_list
|
2192
2211
|
import benchling_api_client.v2.stable.models.workflow_task_groups_unarchive
|
2193
2212
|
import benchling_api_client.v2.stable.models.workflow_task_node_details
|
2213
|
+
import benchling_api_client.v2.stable.models.workflow_task_node_details_node_type
|
2194
2214
|
import benchling_api_client.v2.stable.models.workflow_task_schema
|
2195
2215
|
import benchling_api_client.v2.stable.models.workflow_task_schema_base
|
2196
2216
|
import benchling_api_client.v2.stable.models.workflow_task_schema_execution_type
|
@@ -3353,6 +3373,10 @@ if TYPE_CHECKING:
|
|
3353
3373
|
EventBaseSchema = benchling_api_client.v2.stable.models.event_base_schema.EventBaseSchema
|
3354
3374
|
EventsPaginatedList = benchling_api_client.v2.stable.models.events_paginated_list.EventsPaginatedList
|
3355
3375
|
ExecuteSampleGroups = benchling_api_client.v2.stable.models.execute_sample_groups.ExecuteSampleGroups
|
3376
|
+
ExperimentalWellRole = benchling_api_client.v2.stable.models.experimental_well_role.ExperimentalWellRole
|
3377
|
+
ExperimentalWellRolePrimaryRole = (
|
3378
|
+
benchling_api_client.v2.stable.models.experimental_well_role_primary_role.ExperimentalWellRolePrimaryRole
|
3379
|
+
)
|
3356
3380
|
ExportAuditLogAsyncTask = (
|
3357
3381
|
benchling_api_client.v2.stable.models.export_audit_log_async_task.ExportAuditLogAsyncTask
|
3358
3382
|
)
|
@@ -3476,6 +3500,13 @@ if TYPE_CHECKING:
|
|
3476
3500
|
benchling_api_client.v2.stable.models.ingredient_write_params.IngredientWriteParams
|
3477
3501
|
)
|
3478
3502
|
InitialTable = benchling_api_client.v2.stable.models.initial_table.InitialTable
|
3503
|
+
InstrumentQuery = benchling_api_client.v2.stable.models.instrument_query.InstrumentQuery
|
3504
|
+
InstrumentQueryParams = (
|
3505
|
+
benchling_api_client.v2.stable.models.instrument_query_params.InstrumentQueryParams
|
3506
|
+
)
|
3507
|
+
InstrumentQueryValues = (
|
3508
|
+
benchling_api_client.v2.stable.models.instrument_query_values.InstrumentQueryValues
|
3509
|
+
)
|
3479
3510
|
IntegerAppConfigItem = benchling_api_client.v2.stable.models.integer_app_config_item.IntegerAppConfigItem
|
3480
3511
|
IntegerAppConfigItemType = (
|
3481
3512
|
benchling_api_client.v2.stable.models.integer_app_config_item_type.IntegerAppConfigItemType
|
@@ -4321,6 +4352,9 @@ if TYPE_CHECKING:
|
|
4321
4352
|
WorkflowEndNodeDetails = (
|
4322
4353
|
benchling_api_client.v2.stable.models.workflow_end_node_details.WorkflowEndNodeDetails
|
4323
4354
|
)
|
4355
|
+
WorkflowEndNodeDetailsNodeType = (
|
4356
|
+
benchling_api_client.v2.stable.models.workflow_end_node_details_node_type.WorkflowEndNodeDetailsNodeType
|
4357
|
+
)
|
4324
4358
|
WorkflowFlowchart = benchling_api_client.v2.stable.models.workflow_flowchart.WorkflowFlowchart
|
4325
4359
|
WorkflowFlowchartConfigSummary = (
|
4326
4360
|
benchling_api_client.v2.stable.models.workflow_flowchart_config_summary.WorkflowFlowchartConfigSummary
|
@@ -4364,6 +4398,9 @@ if TYPE_CHECKING:
|
|
4364
4398
|
WorkflowOutputNodeDetails = (
|
4365
4399
|
benchling_api_client.v2.stable.models.workflow_output_node_details.WorkflowOutputNodeDetails
|
4366
4400
|
)
|
4401
|
+
WorkflowOutputNodeDetailsNodeType = (
|
4402
|
+
benchling_api_client.v2.stable.models.workflow_output_node_details_node_type.WorkflowOutputNodeDetailsNodeType
|
4403
|
+
)
|
4367
4404
|
WorkflowOutputSchema = benchling_api_client.v2.stable.models.workflow_output_schema.WorkflowOutputSchema
|
4368
4405
|
WorkflowOutputSummary = (
|
4369
4406
|
benchling_api_client.v2.stable.models.workflow_output_summary.WorkflowOutputSummary
|
@@ -4400,12 +4437,18 @@ if TYPE_CHECKING:
|
|
4400
4437
|
WorkflowRootNodeDetails = (
|
4401
4438
|
benchling_api_client.v2.stable.models.workflow_root_node_details.WorkflowRootNodeDetails
|
4402
4439
|
)
|
4440
|
+
WorkflowRootNodeDetailsNodeType = (
|
4441
|
+
benchling_api_client.v2.stable.models.workflow_root_node_details_node_type.WorkflowRootNodeDetailsNodeType
|
4442
|
+
)
|
4403
4443
|
WorkflowRouterFunction = (
|
4404
4444
|
benchling_api_client.v2.stable.models.workflow_router_function.WorkflowRouterFunction
|
4405
4445
|
)
|
4406
4446
|
WorkflowRouterNodeDetails = (
|
4407
4447
|
benchling_api_client.v2.stable.models.workflow_router_node_details.WorkflowRouterNodeDetails
|
4408
4448
|
)
|
4449
|
+
WorkflowRouterNodeDetailsNodeType = (
|
4450
|
+
benchling_api_client.v2.stable.models.workflow_router_node_details_node_type.WorkflowRouterNodeDetailsNodeType
|
4451
|
+
)
|
4409
4452
|
WorkflowSample = benchling_api_client.v2.stable.models.workflow_sample.WorkflowSample
|
4410
4453
|
WorkflowSampleList = benchling_api_client.v2.stable.models.workflow_sample_list.WorkflowSampleList
|
4411
4454
|
WorkflowStage = benchling_api_client.v2.stable.models.workflow_stage.WorkflowStage
|
@@ -4497,6 +4540,9 @@ if TYPE_CHECKING:
|
|
4497
4540
|
WorkflowTaskNodeDetails = (
|
4498
4541
|
benchling_api_client.v2.stable.models.workflow_task_node_details.WorkflowTaskNodeDetails
|
4499
4542
|
)
|
4543
|
+
WorkflowTaskNodeDetailsNodeType = (
|
4544
|
+
benchling_api_client.v2.stable.models.workflow_task_node_details_node_type.WorkflowTaskNodeDetailsNodeType
|
4545
|
+
)
|
4500
4546
|
WorkflowTaskSchema = benchling_api_client.v2.stable.models.workflow_task_schema.WorkflowTaskSchema
|
4501
4547
|
WorkflowTaskSchemaBase = (
|
4502
4548
|
benchling_api_client.v2.stable.models.workflow_task_schema_base.WorkflowTaskSchemaBase
|
@@ -5089,6 +5135,8 @@ else:
|
|
5089
5135
|
"EventBaseSchema": "benchling_api_client.v2.stable.models.event_base_schema",
|
5090
5136
|
"EventsPaginatedList": "benchling_api_client.v2.stable.models.events_paginated_list",
|
5091
5137
|
"ExecuteSampleGroups": "benchling_api_client.v2.stable.models.execute_sample_groups",
|
5138
|
+
"ExperimentalWellRole": "benchling_api_client.v2.stable.models.experimental_well_role",
|
5139
|
+
"ExperimentalWellRolePrimaryRole": "benchling_api_client.v2.stable.models.experimental_well_role_primary_role",
|
5092
5140
|
"ExportAuditLogAsyncTask": "benchling_api_client.v2.stable.models.export_audit_log_async_task",
|
5093
5141
|
"ExportAuditLogAsyncTaskResponse": "benchling_api_client.v2.stable.models.export_audit_log_async_task_response",
|
5094
5142
|
"ExportItemRequest": "benchling_api_client.v2.stable.models.export_item_request",
|
@@ -5154,6 +5202,9 @@ else:
|
|
5154
5202
|
"IngredientMeasurementUnits": "benchling_api_client.v2.stable.models.ingredient_measurement_units",
|
5155
5203
|
"IngredientWriteParams": "benchling_api_client.v2.stable.models.ingredient_write_params",
|
5156
5204
|
"InitialTable": "benchling_api_client.v2.stable.models.initial_table",
|
5205
|
+
"InstrumentQuery": "benchling_api_client.v2.stable.models.instrument_query",
|
5206
|
+
"InstrumentQueryParams": "benchling_api_client.v2.stable.models.instrument_query_params",
|
5207
|
+
"InstrumentQueryValues": "benchling_api_client.v2.stable.models.instrument_query_values",
|
5157
5208
|
"IntegerAppConfigItem": "benchling_api_client.v2.stable.models.integer_app_config_item",
|
5158
5209
|
"IntegerAppConfigItemType": "benchling_api_client.v2.stable.models.integer_app_config_item_type",
|
5159
5210
|
"IntegerFieldDefinition": "benchling_api_client.v2.stable.models.integer_field_definition",
|
@@ -5577,6 +5628,7 @@ else:
|
|
5577
5628
|
"WellOrInaccessibleResource": "benchling_api_client.v2.stable.models.well_or_inaccessible_resource",
|
5578
5629
|
"WellResourceType": "benchling_api_client.v2.stable.models.well_resource_type",
|
5579
5630
|
"WorkflowEndNodeDetails": "benchling_api_client.v2.stable.models.workflow_end_node_details",
|
5631
|
+
"WorkflowEndNodeDetailsNodeType": "benchling_api_client.v2.stable.models.workflow_end_node_details_node_type",
|
5580
5632
|
"WorkflowFlowchart": "benchling_api_client.v2.stable.models.workflow_flowchart",
|
5581
5633
|
"WorkflowFlowchartConfigSummary": "benchling_api_client.v2.stable.models.workflow_flowchart_config_summary",
|
5582
5634
|
"WorkflowFlowchartConfigVersion": "benchling_api_client.v2.stable.models.workflow_flowchart_config_version",
|
@@ -5594,6 +5646,7 @@ else:
|
|
5594
5646
|
"WorkflowOutputCreatedEvent": "benchling_api_client.v2.stable.models.workflow_output_created_event",
|
5595
5647
|
"WorkflowOutputCreatedEventEventType": "benchling_api_client.v2.stable.models.workflow_output_created_event_event_type",
|
5596
5648
|
"WorkflowOutputNodeDetails": "benchling_api_client.v2.stable.models.workflow_output_node_details",
|
5649
|
+
"WorkflowOutputNodeDetailsNodeType": "benchling_api_client.v2.stable.models.workflow_output_node_details_node_type",
|
5597
5650
|
"WorkflowOutputSchema": "benchling_api_client.v2.stable.models.workflow_output_schema",
|
5598
5651
|
"WorkflowOutputSummary": "benchling_api_client.v2.stable.models.workflow_output_summary",
|
5599
5652
|
"WorkflowOutputUpdate": "benchling_api_client.v2.stable.models.workflow_output_update",
|
@@ -5608,8 +5661,10 @@ else:
|
|
5608
5661
|
"WorkflowOutputsUnarchive": "benchling_api_client.v2.stable.models.workflow_outputs_unarchive",
|
5609
5662
|
"WorkflowPatch": "benchling_api_client.v2.stable.models.workflow_patch",
|
5610
5663
|
"WorkflowRootNodeDetails": "benchling_api_client.v2.stable.models.workflow_root_node_details",
|
5664
|
+
"WorkflowRootNodeDetailsNodeType": "benchling_api_client.v2.stable.models.workflow_root_node_details_node_type",
|
5611
5665
|
"WorkflowRouterFunction": "benchling_api_client.v2.stable.models.workflow_router_function",
|
5612
5666
|
"WorkflowRouterNodeDetails": "benchling_api_client.v2.stable.models.workflow_router_node_details",
|
5667
|
+
"WorkflowRouterNodeDetailsNodeType": "benchling_api_client.v2.stable.models.workflow_router_node_details_node_type",
|
5613
5668
|
"WorkflowSample": "benchling_api_client.v2.stable.models.workflow_sample",
|
5614
5669
|
"WorkflowSampleList": "benchling_api_client.v2.stable.models.workflow_sample_list",
|
5615
5670
|
"WorkflowStage": "benchling_api_client.v2.stable.models.workflow_stage",
|
@@ -5647,6 +5702,7 @@ else:
|
|
5647
5702
|
"WorkflowTaskGroupsPaginatedList": "benchling_api_client.v2.stable.models.workflow_task_groups_paginated_list",
|
5648
5703
|
"WorkflowTaskGroupsUnarchive": "benchling_api_client.v2.stable.models.workflow_task_groups_unarchive",
|
5649
5704
|
"WorkflowTaskNodeDetails": "benchling_api_client.v2.stable.models.workflow_task_node_details",
|
5705
|
+
"WorkflowTaskNodeDetailsNodeType": "benchling_api_client.v2.stable.models.workflow_task_node_details_node_type",
|
5650
5706
|
"WorkflowTaskSchema": "benchling_api_client.v2.stable.models.workflow_task_schema",
|
5651
5707
|
"WorkflowTaskSchemaBase": "benchling_api_client.v2.stable.models.workflow_task_schema_base",
|
5652
5708
|
"WorkflowTaskSchemaExecutionType": "benchling_api_client.v2.stable.models.workflow_task_schema_execution_type",
|
@@ -19,6 +19,8 @@ __all__ = [
|
|
19
19
|
"AssayRunCreatedWebhookV2Type",
|
20
20
|
"AssayRunUpdatedFieldsWebhookV2",
|
21
21
|
"AssayRunUpdatedFieldsWebhookV2Type",
|
22
|
+
"CanvasCreatedWebhookV2Beta",
|
23
|
+
"CanvasCreatedWebhookV2BetaType",
|
22
24
|
"CanvasInitializeWebhookV2",
|
23
25
|
"CanvasInitializeWebhookV2Type",
|
24
26
|
"CanvasInteractionWebhookV2",
|
@@ -130,6 +132,8 @@ if TYPE_CHECKING:
|
|
130
132
|
import benchling_api_client.webhooks.v0.stable.models.assay_run_created_webhook_v2_type
|
131
133
|
import benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2
|
132
134
|
import benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2_type
|
135
|
+
import benchling_api_client.webhooks.v0.stable.models.canvas_created_webhook_v2_beta
|
136
|
+
import benchling_api_client.webhooks.v0.stable.models.canvas_created_webhook_v2_beta_type
|
133
137
|
import benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2
|
134
138
|
import benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2_type
|
135
139
|
import benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v2
|
@@ -259,6 +263,12 @@ if TYPE_CHECKING:
|
|
259
263
|
AssayRunUpdatedFieldsWebhookV2Type = (
|
260
264
|
benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2_type.AssayRunUpdatedFieldsWebhookV2Type
|
261
265
|
)
|
266
|
+
CanvasCreatedWebhookV2Beta = (
|
267
|
+
benchling_api_client.webhooks.v0.stable.models.canvas_created_webhook_v2_beta.CanvasCreatedWebhookV2Beta
|
268
|
+
)
|
269
|
+
CanvasCreatedWebhookV2BetaType = (
|
270
|
+
benchling_api_client.webhooks.v0.stable.models.canvas_created_webhook_v2_beta_type.CanvasCreatedWebhookV2BetaType
|
271
|
+
)
|
262
272
|
CanvasInitializeWebhookV2 = (
|
263
273
|
benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2.CanvasInitializeWebhookV2
|
264
274
|
)
|
@@ -558,6 +568,8 @@ else:
|
|
558
568
|
"AssayRunCreatedWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.assay_run_created_webhook_v2_type",
|
559
569
|
"AssayRunUpdatedFieldsWebhookV2": "benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2",
|
560
570
|
"AssayRunUpdatedFieldsWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2_type",
|
571
|
+
"CanvasCreatedWebhookV2Beta": "benchling_api_client.webhooks.v0.stable.models.canvas_created_webhook_v2_beta",
|
572
|
+
"CanvasCreatedWebhookV2BetaType": "benchling_api_client.webhooks.v0.stable.models.canvas_created_webhook_v2_beta_type",
|
561
573
|
"CanvasInitializeWebhookV2": "benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2",
|
562
574
|
"CanvasInitializeWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2_type",
|
563
575
|
"CanvasInteractionWebhookV2": "benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v2",
|
@@ -0,0 +1,62 @@
|
|
1
|
+
from benchling_api_client.v2.alpha.api.assemblies import (
|
2
|
+
create_and_finalize_assembly,
|
3
|
+
get_assembly,
|
4
|
+
validate_assembly,
|
5
|
+
)
|
6
|
+
from benchling_api_client.v2.alpha.models.assembly import Assembly
|
7
|
+
from benchling_api_client.v2.alpha.models.assembly_spec_shared import AssemblySpecShared
|
8
|
+
from benchling_api_client.v2.alpha.models.create_and_finalize_assembly_json_body import (
|
9
|
+
CreateAndFinalizeAssemblyJsonBody,
|
10
|
+
)
|
11
|
+
|
12
|
+
from benchling_sdk.helpers.decorators import api_method
|
13
|
+
from benchling_sdk.helpers.response_helpers import model_from_detailed
|
14
|
+
from benchling_sdk.models import AsyncTaskLink
|
15
|
+
from benchling_sdk.services.v2.base_service import BaseService
|
16
|
+
|
17
|
+
|
18
|
+
class V2AlphaAssemblyService(BaseService):
|
19
|
+
"""
|
20
|
+
V2-Alpha Assemblies.
|
21
|
+
|
22
|
+
In Benchling, Assemblies are records of a process in which many fragment sequences are
|
23
|
+
assembled in silico to create new construct sequences.
|
24
|
+
|
25
|
+
https://benchling.com/api/v2-alpha/reference#/Assemblies
|
26
|
+
"""
|
27
|
+
|
28
|
+
@api_method
|
29
|
+
def get_by_id(self, bulk_assembly_id: str) -> Assembly:
|
30
|
+
"""
|
31
|
+
Get a bulk assembly by its API identifier.
|
32
|
+
|
33
|
+
See https://benchling.com/api/v2-alpha/reference#/Assemblies/GetAssembly
|
34
|
+
"""
|
35
|
+
response = get_assembly.sync_detailed(client=self.client, bulk_assembly_id=bulk_assembly_id)
|
36
|
+
return model_from_detailed(response)
|
37
|
+
|
38
|
+
@api_method
|
39
|
+
def create_and_finalize(self, create: CreateAndFinalizeAssemblyJsonBody) -> AsyncTaskLink:
|
40
|
+
"""
|
41
|
+
Create and finalize a new bulk assembly in a single step.
|
42
|
+
|
43
|
+
This endpoint launches a long-running task and returns the Task ID of the launched task.
|
44
|
+
The task response contains a finalized bulk assembly.
|
45
|
+
|
46
|
+
See https://benchling.com/api/v2-alpha/reference#/Assemblies/CreateAndFinalizeAssembly
|
47
|
+
"""
|
48
|
+
response = create_and_finalize_assembly.sync_detailed(client=self.client, json_body=create)
|
49
|
+
return model_from_detailed(response)
|
50
|
+
|
51
|
+
@api_method
|
52
|
+
def validate(self, assembly: AssemblySpecShared) -> AsyncTaskLink:
|
53
|
+
"""
|
54
|
+
Validate an assembly prior to finalization to see if it will succeed.
|
55
|
+
|
56
|
+
This endpoint launches a long-running task and returns the Task ID of the launched task.
|
57
|
+
The task response contains a set of validation results.
|
58
|
+
|
59
|
+
See https://benchling.com/api/v2-alpha/reference#/Assemblies/ValidateAssembly
|
60
|
+
"""
|
61
|
+
response = validate_assembly.sync_detailed(client=self.client, json_body=assembly)
|
62
|
+
return model_from_detailed(response)
|
@@ -0,0 +1,46 @@
|
|
1
|
+
from typing import List, Optional
|
2
|
+
|
3
|
+
from benchling_api_client.v2.beta.api.analyses import get_analysis, update_analysis
|
4
|
+
from benchling_api_client.v2.beta.models.analysis import Analysis
|
5
|
+
from benchling_api_client.v2.beta.models.analysis_update import AnalysisUpdate
|
6
|
+
|
7
|
+
from benchling_sdk.helpers.decorators import api_method
|
8
|
+
from benchling_sdk.helpers.response_helpers import model_from_detailed
|
9
|
+
from benchling_sdk.helpers.serialization_helpers import none_as_unset, optional_array_query_param
|
10
|
+
from benchling_sdk.services.v2.base_service import BaseService
|
11
|
+
|
12
|
+
|
13
|
+
class V2BetaAnalysisService(BaseService):
|
14
|
+
"""
|
15
|
+
V2-Beta Analyses.
|
16
|
+
|
17
|
+
Analyses allow experimental data to be viewed, analyzed, and visualized.
|
18
|
+
|
19
|
+
https://benchling.com/api/v2-beta/reference#/Analyses
|
20
|
+
"""
|
21
|
+
|
22
|
+
@api_method
|
23
|
+
def get_by_id(self, analysis_id: str, returning: Optional[List[str]] = None) -> Analysis:
|
24
|
+
"""
|
25
|
+
Get an analysis.
|
26
|
+
|
27
|
+
See https://benchling.com/api/v2-beta/reference#/Analyses/getAnalysis
|
28
|
+
"""
|
29
|
+
response = get_analysis.sync_detailed(
|
30
|
+
client=self.client,
|
31
|
+
analysis_id=analysis_id,
|
32
|
+
returning=none_as_unset(optional_array_query_param(returning)),
|
33
|
+
)
|
34
|
+
return model_from_detailed(response)
|
35
|
+
|
36
|
+
@api_method
|
37
|
+
def update(self, analysis_id: str, update: AnalysisUpdate) -> Analysis:
|
38
|
+
"""
|
39
|
+
Update an analysis.
|
40
|
+
|
41
|
+
See https://benchling.com/api/v2-beta/reference#/Analyses/updateAnalysis
|
42
|
+
"""
|
43
|
+
response = update_analysis.sync_detailed(
|
44
|
+
client=self.client, analysis_id=analysis_id, json_body=update
|
45
|
+
)
|
46
|
+
return model_from_detailed(response)
|
@@ -0,0 +1,45 @@
|
|
1
|
+
from benchling_api_client.v2.beta.api.app_definitions import (
|
2
|
+
get_benchling_app_definition_version_manifest,
|
3
|
+
put_benchling_app_definition_version_manifest,
|
4
|
+
)
|
5
|
+
from benchling_api_client.v2.beta.models.benchling_app_manifest import BenchlingAppManifest
|
6
|
+
|
7
|
+
from benchling_sdk.helpers.decorators import api_method
|
8
|
+
from benchling_sdk.helpers.response_helpers import model_from_detailed
|
9
|
+
from benchling_sdk.services.v2.base_service import BaseService
|
10
|
+
|
11
|
+
|
12
|
+
class V2BetaAppDefinitionService(BaseService):
|
13
|
+
"""
|
14
|
+
V2-Beta App Definitions.
|
15
|
+
|
16
|
+
Create and manage Benchling app definitions on your tenant.
|
17
|
+
|
18
|
+
https://benchling.com/api/v2-beta/reference#/App%20Definitions
|
19
|
+
"""
|
20
|
+
|
21
|
+
@api_method
|
22
|
+
def get_version_manifest(self, app_def_id: str, version_id: str) -> BenchlingAppManifest:
|
23
|
+
"""
|
24
|
+
Get manifest for an app definition version.
|
25
|
+
|
26
|
+
See https://benchling.com/api/v2-beta/reference#/App%20Definitions/getBenchlingAppDefinitionVersionManifest
|
27
|
+
"""
|
28
|
+
response = get_benchling_app_definition_version_manifest.sync_detailed(
|
29
|
+
client=self.client, app_def_id=app_def_id, version_id=version_id
|
30
|
+
)
|
31
|
+
return model_from_detailed(response)
|
32
|
+
|
33
|
+
@api_method
|
34
|
+
def put_version_manifest(
|
35
|
+
self, app_def_id: str, version_id: str, manifest: BenchlingAppManifest
|
36
|
+
) -> BenchlingAppManifest:
|
37
|
+
"""
|
38
|
+
Create or update app definition version from a manifest.
|
39
|
+
|
40
|
+
See https://benchling.com/api/v2-beta/reference#/App%20Definitions/putBenchlingAppDefinitionVersionManifest
|
41
|
+
"""
|
42
|
+
response = put_benchling_app_definition_version_manifest.sync_detailed(
|
43
|
+
client=self.client, app_def_id=app_def_id, version_id=version_id, yaml_body=manifest
|
44
|
+
)
|
45
|
+
return model_from_detailed(response)
|
@@ -0,0 +1,41 @@
|
|
1
|
+
from benchling_api_client.v2.beta.api.audit import audit_log
|
2
|
+
from benchling_api_client.v2.beta.models.audit_log_export import AuditLogExport
|
3
|
+
|
4
|
+
from benchling_sdk.helpers.decorators import api_method
|
5
|
+
from benchling_sdk.helpers.response_helpers import model_from_detailed
|
6
|
+
from benchling_sdk.models import AsyncTaskLink
|
7
|
+
from benchling_sdk.services.v2.base_service import BaseService
|
8
|
+
|
9
|
+
|
10
|
+
class V2BetaAuditService(BaseService):
|
11
|
+
"""
|
12
|
+
V2-Beta Audit Service.
|
13
|
+
|
14
|
+
Export audit log data for Benchling objects.
|
15
|
+
|
16
|
+
https://benchling.com/api/v2-beta/reference#/Audit
|
17
|
+
"""
|
18
|
+
|
19
|
+
@api_method
|
20
|
+
def get_audit_log(self, object_id: str, export: AuditLogExport) -> AsyncTaskLink:
|
21
|
+
"""
|
22
|
+
Export an audit log file for a Benchling object.
|
23
|
+
|
24
|
+
This endpoint launches a long-running task and returns the Task ID of the
|
25
|
+
launched task. The task response contains a link to download the exported audit
|
26
|
+
log file from Amazon S3. This endpoint is subject to a rate limit of 500 requests
|
27
|
+
per hour, in conjunction with the global request rate limit. Export throughput
|
28
|
+
will additionally be rate limited around the scale of 70,000 total audit events
|
29
|
+
exported in csv format or 30,000 total audit events exported in pdf format per hour.
|
30
|
+
|
31
|
+
Example of submitting an export request and then getting the download URL from
|
32
|
+
the completed task:
|
33
|
+
|
34
|
+
task_link = benchling.v2.beta.audit.get_audit_log(object_id, export)
|
35
|
+
task = benchling.tasks.wait_for_task(task_link.task_id)
|
36
|
+
url = task.response["downloadURL"]
|
37
|
+
|
38
|
+
See https://benchling.com/api/v2-beta/reference#/Audit/auditLog
|
39
|
+
"""
|
40
|
+
response = audit_log.sync_detailed(client=self.client, object_id=object_id, json_body=export)
|
41
|
+
return model_from_detailed(response)
|
@@ -0,0 +1,35 @@
|
|
1
|
+
from typing import Iterable, Optional
|
2
|
+
|
3
|
+
from benchling_api_client.v2.beta.api.entries import update_entry
|
4
|
+
from benchling_api_client.v2.beta.models.entry import Entry
|
5
|
+
from benchling_api_client.v2.beta.models.entry_update import EntryUpdate
|
6
|
+
|
7
|
+
from benchling_sdk.helpers.decorators import api_method
|
8
|
+
from benchling_sdk.helpers.response_helpers import model_from_detailed
|
9
|
+
from benchling_sdk.helpers.serialization_helpers import none_as_unset, optional_array_query_param
|
10
|
+
from benchling_sdk.services.v2.base_service import BaseService
|
11
|
+
|
12
|
+
|
13
|
+
class V2BetaEntryService(BaseService):
|
14
|
+
"""
|
15
|
+
V2-Beta Entries.
|
16
|
+
|
17
|
+
Entries are rich text documents that allow you to capture all of your experimental data in one place.
|
18
|
+
|
19
|
+
https://benchling.com/api/v2-beta/reference#/Entries
|
20
|
+
"""
|
21
|
+
|
22
|
+
@api_method
|
23
|
+
def update_entry(
|
24
|
+
self, entry_id: str, entry: EntryUpdate, returning: Optional[Iterable[str]] = None
|
25
|
+
) -> Entry:
|
26
|
+
"""
|
27
|
+
Update a notebook entry's metadata.
|
28
|
+
|
29
|
+
See https://benchling.com/api/v2-beta/reference#/Entries/updateEntry
|
30
|
+
"""
|
31
|
+
returning_string = optional_array_query_param(returning)
|
32
|
+
response = update_entry.sync_detailed(
|
33
|
+
client=self.client, entry_id=entry_id, json_body=entry, returning=none_as_unset(returning_string)
|
34
|
+
)
|
35
|
+
return model_from_detailed(response)
|