benchling-sdk 1.15.0a1__tar.gz → 1.17.0__tar.gz

{benchling_sdk-1.15.0a1 → benchling_sdk-1.17.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: benchling-sdk
-Version: 1.15.0a1
+Version: 1.17.0
 Summary: SDK for interacting with the Benchling Platform.
 License: Apache-2.0
 Author: Benchling Support
@@ -15,9 +15,9 @@ Classifier: Programming Language :: Python :: 3.11
 Provides-Extra: cryptography
 Provides-Extra: python-jose
 Requires-Dist: PyYAML (>=6.0,<7.0)
-Requires-Dist: attrs (>=20.1.0,<24)
+Requires-Dist: attrs (>=20.1.0)
 Requires-Dist: backoff (>=1.10.0,<3)
-Requires-Dist: benchling-api-client (==2.0.309)
+Requires-Dist: benchling-api-client (==2.0.317)
 Requires-Dist: certifi (>=2022.12.7)
 Requires-Dist: cryptography (>=42.0.0) ; extra == "cryptography"
 Requires-Dist: dataclasses-json (>=0.5.2,<0.6.0)

{benchling_sdk-1.15.0a1 → benchling_sdk-1.17.0}/benchling_sdk/benchling.py

@@ -20,6 +20,7 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.stable.assay_run_service import AssayRunService
     from benchling_sdk.services.v2.stable.blob_service import BlobService
     from benchling_sdk.services.v2.stable.box_service import BoxService
+    from benchling_sdk.services.v2.stable.codon_usage_table_service import CodonUsageTableService
     from benchling_sdk.services.v2.stable.container_service import ContainerService
     from benchling_sdk.services.v2.stable.custom_entity_service import CustomEntityService
     from benchling_sdk.services.v2.stable.custom_notation_service import CustomNotationService
@@ -29,6 +30,7 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.stable.dropdown_service import DropdownService
     from benchling_sdk.services.v2.stable.entity_service import EntityService
     from benchling_sdk.services.v2.stable.entry_service import EntryService
+    from benchling_sdk.services.v2.stable.enzyme_service import EnzymeService
     from benchling_sdk.services.v2.stable.event_service import EventService
     from benchling_sdk.services.v2.stable.export_service import ExportService
     from benchling_sdk.services.v2.stable.feature_library_service import FeatureLibraryService
@@ -39,6 +41,7 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.stable.location_service import LocationService
     from benchling_sdk.services.v2.stable.mixture_service import MixtureService
     from benchling_sdk.services.v2.stable.molecule_service import MoleculeService
+    from benchling_sdk.services.v2.stable.monomer_service import MonomerService
     from benchling_sdk.services.v2.stable.nucleotide_alignments_service import NucleotideAlignmentsService
     from benchling_sdk.services.v2.stable.oligo_service import OligoService
     from benchling_sdk.services.v2.stable.organization_service import OrganizationService
@@ -265,6 +268,18 @@ class Benchling(object):
         """
         return self.v2.stable.boxes
 
+    @property
+    def codon_usage_tables(self) -> CodonUsageTableService:
+        """
+        Codon Usage Tables.
+
+        Benchling curates codon usage data for a variety of organisms to support operations such as Codon
+        Optimization and Back Translation.
+
+        See https://benchling.com/api/reference#/Codon%20Usage%20Tables
+        """
+        return self.v2.stable.codon_usage_tables
+
     @property
     def containers(self) -> ContainerService:
         """
@@ -389,6 +404,17 @@ class Benchling(object):
         """
         return self.v2.stable.entries
 
+    @property
+    def enzymes(self) -> EnzymeService:
+        """
+        Enzymes.
+
+        Restriction enzymes are curated by Benchling for operations such as Digests and Codon Optimization.
+
+        See https://benchling.com/api/reference#/Enzymes
+        """
+        return self.v2.stable.enzymes
+
     @property
     def events(self) -> EventService:
         """
@@ -492,6 +518,18 @@ class Benchling(object):
         """
         return self.v2.stable.mixtures
 
+    @property
+    def monomers(self) -> MonomerService:
+        """
+        Monomers.
+
+        Monomers are chemical building blocks with specified structures used to compose modified
+        nucleotides. Note that monomer write endpoints require tenant admin permissions.
+
+        See https://benchling.com/api/reference#/Monomers
+        """
+        return self.v2.stable.monomers
+
     @property
     def molecules(self) -> MoleculeService:
         """

{benchling_sdk-1.15.0a1 → benchling_sdk-1.17.0}/benchling_sdk/errors.py

@@ -204,7 +204,7 @@ class DataFrameInProgressError(Exception):
 
 def raise_for_status(
     response: Response, error_matchers: Optional[Iterable[ResponseErrorMatcher[E]]] = None
-) -> None:
+) -> Response:
     """
     Evaluate a Response for a successful HTTP status code or raise a BenchlingError.
 
@@ -224,6 +224,7 @@ def raise_for_status(
                 check_matcher.raise_on_match(response)
         # Raise a generalized error
         raise BenchlingError.from_response(response)
+    return response
 
 
 def _parse_error_body(content: bytes) -> Optional[Dict[str, str]]:

{benchling_sdk-1.15.0a1 → benchling_sdk-1.17.0}/benchling_sdk/models/__init__.py

@@ -138,7 +138,12 @@ __all__ = [
     "AssayResultsBulkCreateInTableRequest",
     "AssayResultsBulkCreateRequest",
     "AssayResultsBulkGet",
+    "AssayResultsCreateErrorResponse",
+    "AssayResultsCreateErrorResponseAssayResultsItem",
+    "AssayResultsCreateErrorResponseErrorsItem",
+    "AssayResultsCreateErrorResponseErrorsItemFields",
     "AssayResultsCreateResponse",
+    "AssayResultsCreateResponseErrors",
     "AssayResultsPaginatedList",
     "AssayRun",
     "AssayRunCreate",
@@ -158,8 +163,13 @@ __all__ = [
     "AssayRunsArchivalChange",
     "AssayRunsArchive",
     "AssayRunsArchiveReason",
+    "AssayRunsBulkCreateErrorResponse",
+    "AssayRunsBulkCreateErrorResponseAssayRunsItem",
+    "AssayRunsBulkCreateErrorResponseErrorsItem",
+    "AssayRunsBulkCreateErrorResponseErrorsItemFields",
     "AssayRunsBulkCreateRequest",
     "AssayRunsBulkCreateResponse",
+    "AssayRunsBulkCreateResponseErrors",
     "AssayRunsBulkGet",
     "AssayRunsPaginatedList",
     "AssayRunsUnarchive",
@@ -675,6 +685,13 @@ __all__ = [
     "MatchBasesRequestArchiveReason",
     "MatchBasesRequestSort",
     "Measurement",
+    "Membership",
+    "MembershipCreate",
+    "MembershipCreateRole",
+    "MembershipRole",
+    "MembershipUpdate",
+    "MembershipUpdateRole",
+    "MembershipsPaginatedList",
     "Mixture",
     "MixtureBulkUpdate",
     "MixtureCreate",
@@ -954,7 +971,9 @@ __all__ = [
     "TableUiBlockType",
     "TableUiBlockUpdate",
     "Team",
+    "TeamCreate",
     "TeamSummary",
+    "TeamUpdate",
     "TeamsPaginatedList",
     "TextAppConfigItem",
     "TextAppConfigItemType",
@@ -1054,6 +1073,8 @@ __all__ = [
     "WorkflowTaskGroupCreatedEvent",
     "WorkflowTaskGroupCreatedEventEventType",
     "WorkflowTaskGroupExecutionType",
+    "WorkflowTaskGroupMappingCompletedEvent",
+    "WorkflowTaskGroupMappingCompletedEventEventType",
     "WorkflowTaskGroupSummary",
     "WorkflowTaskGroupUpdate",
     "WorkflowTaskGroupUpdatedWatchersEvent",
@@ -1223,7 +1244,12 @@ if TYPE_CHECKING:
     import benchling_api_client.v2.stable.models.assay_results_bulk_create_in_table_request
     import benchling_api_client.v2.stable.models.assay_results_bulk_create_request
     import benchling_api_client.v2.stable.models.assay_results_bulk_get
+    import benchling_api_client.v2.stable.models.assay_results_create_error_response
+    import benchling_api_client.v2.stable.models.assay_results_create_error_response_assay_results_item
+    import benchling_api_client.v2.stable.models.assay_results_create_error_response_errors_item
+    import benchling_api_client.v2.stable.models.assay_results_create_error_response_errors_item_fields
     import benchling_api_client.v2.stable.models.assay_results_create_response
+    import benchling_api_client.v2.stable.models.assay_results_create_response_errors
     import benchling_api_client.v2.stable.models.assay_results_paginated_list
     import benchling_api_client.v2.stable.models.assay_run
     import benchling_api_client.v2.stable.models.assay_run_create
@@ -1243,8 +1269,13 @@ if TYPE_CHECKING:
     import benchling_api_client.v2.stable.models.assay_runs_archival_change
     import benchling_api_client.v2.stable.models.assay_runs_archive
     import benchling_api_client.v2.stable.models.assay_runs_archive_reason
+    import benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response
+    import benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_assay_runs_item
+    import benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_errors_item
+    import benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_errors_item_fields
     import benchling_api_client.v2.stable.models.assay_runs_bulk_create_request
     import benchling_api_client.v2.stable.models.assay_runs_bulk_create_response
+    import benchling_api_client.v2.stable.models.assay_runs_bulk_create_response_errors
     import benchling_api_client.v2.stable.models.assay_runs_bulk_get
     import benchling_api_client.v2.stable.models.assay_runs_paginated_list
     import benchling_api_client.v2.stable.models.assay_runs_unarchive
@@ -1760,6 +1791,13 @@ if TYPE_CHECKING:
     import benchling_api_client.v2.stable.models.match_bases_request_archive_reason
     import benchling_api_client.v2.stable.models.match_bases_request_sort
     import benchling_api_client.v2.stable.models.measurement
+    import benchling_api_client.v2.stable.models.membership
+    import benchling_api_client.v2.stable.models.membership_create
+    import benchling_api_client.v2.stable.models.membership_create_role
+    import benchling_api_client.v2.stable.models.membership_role
+    import benchling_api_client.v2.stable.models.membership_update
+    import benchling_api_client.v2.stable.models.membership_update_role
+    import benchling_api_client.v2.stable.models.memberships_paginated_list
     import benchling_api_client.v2.stable.models.mixture
     import benchling_api_client.v2.stable.models.mixture_bulk_update
     import benchling_api_client.v2.stable.models.mixture_create
@@ -2039,7 +2077,9 @@ if TYPE_CHECKING:
     import benchling_api_client.v2.stable.models.table_ui_block_type
     import benchling_api_client.v2.stable.models.table_ui_block_update
     import benchling_api_client.v2.stable.models.team
+    import benchling_api_client.v2.stable.models.team_create
     import benchling_api_client.v2.stable.models.team_summary
+    import benchling_api_client.v2.stable.models.team_update
     import benchling_api_client.v2.stable.models.teams_paginated_list
     import benchling_api_client.v2.stable.models.text_app_config_item
     import benchling_api_client.v2.stable.models.text_app_config_item_type
@@ -2139,6 +2179,8 @@ if TYPE_CHECKING:
     import benchling_api_client.v2.stable.models.workflow_task_group_created_event
     import benchling_api_client.v2.stable.models.workflow_task_group_created_event_event_type
     import benchling_api_client.v2.stable.models.workflow_task_group_execution_type
+    import benchling_api_client.v2.stable.models.workflow_task_group_mapping_completed_event
+    import benchling_api_client.v2.stable.models.workflow_task_group_mapping_completed_event_event_type
     import benchling_api_client.v2.stable.models.workflow_task_group_summary
     import benchling_api_client.v2.stable.models.workflow_task_group_update
     import benchling_api_client.v2.stable.models.workflow_task_group_updated_watchers_event
@@ -2482,9 +2524,24 @@ if TYPE_CHECKING:
         benchling_api_client.v2.stable.models.assay_results_bulk_create_request.AssayResultsBulkCreateRequest
     )
     AssayResultsBulkGet = benchling_api_client.v2.stable.models.assay_results_bulk_get.AssayResultsBulkGet
+    AssayResultsCreateErrorResponse = (
+        benchling_api_client.v2.stable.models.assay_results_create_error_response.AssayResultsCreateErrorResponse
+    )
+    AssayResultsCreateErrorResponseAssayResultsItem = (
+        benchling_api_client.v2.stable.models.assay_results_create_error_response_assay_results_item.AssayResultsCreateErrorResponseAssayResultsItem
+    )
+    AssayResultsCreateErrorResponseErrorsItem = (
+        benchling_api_client.v2.stable.models.assay_results_create_error_response_errors_item.AssayResultsCreateErrorResponseErrorsItem
+    )
+    AssayResultsCreateErrorResponseErrorsItemFields = (
+        benchling_api_client.v2.stable.models.assay_results_create_error_response_errors_item_fields.AssayResultsCreateErrorResponseErrorsItemFields
+    )
     AssayResultsCreateResponse = (
         benchling_api_client.v2.stable.models.assay_results_create_response.AssayResultsCreateResponse
     )
+    AssayResultsCreateResponseErrors = (
+        benchling_api_client.v2.stable.models.assay_results_create_response_errors.AssayResultsCreateResponseErrors
+    )
     AssayResultsPaginatedList = (
         benchling_api_client.v2.stable.models.assay_results_paginated_list.AssayResultsPaginatedList
     )
@@ -2524,12 +2581,27 @@ if TYPE_CHECKING:
     AssayRunsArchiveReason = (
         benchling_api_client.v2.stable.models.assay_runs_archive_reason.AssayRunsArchiveReason
     )
+    AssayRunsBulkCreateErrorResponse = (
+        benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response.AssayRunsBulkCreateErrorResponse
+    )
+    AssayRunsBulkCreateErrorResponseAssayRunsItem = (
+        benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_assay_runs_item.AssayRunsBulkCreateErrorResponseAssayRunsItem
+    )
+    AssayRunsBulkCreateErrorResponseErrorsItem = (
+        benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_errors_item.AssayRunsBulkCreateErrorResponseErrorsItem
+    )
+    AssayRunsBulkCreateErrorResponseErrorsItemFields = (
+        benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_errors_item_fields.AssayRunsBulkCreateErrorResponseErrorsItemFields
+    )
     AssayRunsBulkCreateRequest = (
         benchling_api_client.v2.stable.models.assay_runs_bulk_create_request.AssayRunsBulkCreateRequest
     )
     AssayRunsBulkCreateResponse = (
         benchling_api_client.v2.stable.models.assay_runs_bulk_create_response.AssayRunsBulkCreateResponse
     )
+    AssayRunsBulkCreateResponseErrors = (
+        benchling_api_client.v2.stable.models.assay_runs_bulk_create_response_errors.AssayRunsBulkCreateResponseErrors
+    )
     AssayRunsBulkGet = benchling_api_client.v2.stable.models.assay_runs_bulk_get.AssayRunsBulkGet
     AssayRunsPaginatedList = (
         benchling_api_client.v2.stable.models.assay_runs_paginated_list.AssayRunsPaginatedList
@@ -3591,6 +3663,15 @@ if TYPE_CHECKING:
         benchling_api_client.v2.stable.models.match_bases_request_sort.MatchBasesRequestSort
     )
     Measurement = benchling_api_client.v2.stable.models.measurement.Measurement
+    Membership = benchling_api_client.v2.stable.models.membership.Membership
+    MembershipCreate = benchling_api_client.v2.stable.models.membership_create.MembershipCreate
+    MembershipCreateRole = benchling_api_client.v2.stable.models.membership_create_role.MembershipCreateRole
+    MembershipRole = benchling_api_client.v2.stable.models.membership_role.MembershipRole
+    MembershipUpdate = benchling_api_client.v2.stable.models.membership_update.MembershipUpdate
+    MembershipUpdateRole = benchling_api_client.v2.stable.models.membership_update_role.MembershipUpdateRole
+    MembershipsPaginatedList = (
+        benchling_api_client.v2.stable.models.memberships_paginated_list.MembershipsPaginatedList
+    )
     Mixture = benchling_api_client.v2.stable.models.mixture.Mixture
     MixtureBulkUpdate = benchling_api_client.v2.stable.models.mixture_bulk_update.MixtureBulkUpdate
     MixtureCreate = benchling_api_client.v2.stable.models.mixture_create.MixtureCreate
@@ -4166,7 +4247,9 @@ if TYPE_CHECKING:
     TableUiBlockType = benchling_api_client.v2.stable.models.table_ui_block_type.TableUiBlockType
     TableUiBlockUpdate = benchling_api_client.v2.stable.models.table_ui_block_update.TableUiBlockUpdate
     Team = benchling_api_client.v2.stable.models.team.Team
+    TeamCreate = benchling_api_client.v2.stable.models.team_create.TeamCreate
     TeamSummary = benchling_api_client.v2.stable.models.team_summary.TeamSummary
+    TeamUpdate = benchling_api_client.v2.stable.models.team_update.TeamUpdate
     TeamsPaginatedList = benchling_api_client.v2.stable.models.teams_paginated_list.TeamsPaginatedList
     TextAppConfigItem = benchling_api_client.v2.stable.models.text_app_config_item.TextAppConfigItem
     TextAppConfigItemType = (
@@ -4378,6 +4461,12 @@ if TYPE_CHECKING:
     WorkflowTaskGroupExecutionType = (
         benchling_api_client.v2.stable.models.workflow_task_group_execution_type.WorkflowTaskGroupExecutionType
     )
+    WorkflowTaskGroupMappingCompletedEvent = (
+        benchling_api_client.v2.stable.models.workflow_task_group_mapping_completed_event.WorkflowTaskGroupMappingCompletedEvent
+    )
+    WorkflowTaskGroupMappingCompletedEventEventType = (
+        benchling_api_client.v2.stable.models.workflow_task_group_mapping_completed_event_event_type.WorkflowTaskGroupMappingCompletedEventEventType
+    )
     WorkflowTaskGroupSummary = (
         benchling_api_client.v2.stable.models.workflow_task_group_summary.WorkflowTaskGroupSummary
     )
@@ -4611,7 +4700,12 @@ else:
         "AssayResultsBulkCreateInTableRequest": "benchling_api_client.v2.stable.models.assay_results_bulk_create_in_table_request",
         "AssayResultsBulkCreateRequest": "benchling_api_client.v2.stable.models.assay_results_bulk_create_request",
         "AssayResultsBulkGet": "benchling_api_client.v2.stable.models.assay_results_bulk_get",
+        "AssayResultsCreateErrorResponse": "benchling_api_client.v2.stable.models.assay_results_create_error_response",
+        "AssayResultsCreateErrorResponseAssayResultsItem": "benchling_api_client.v2.stable.models.assay_results_create_error_response_assay_results_item",
+        "AssayResultsCreateErrorResponseErrorsItem": "benchling_api_client.v2.stable.models.assay_results_create_error_response_errors_item",
+        "AssayResultsCreateErrorResponseErrorsItemFields": "benchling_api_client.v2.stable.models.assay_results_create_error_response_errors_item_fields",
         "AssayResultsCreateResponse": "benchling_api_client.v2.stable.models.assay_results_create_response",
+        "AssayResultsCreateResponseErrors": "benchling_api_client.v2.stable.models.assay_results_create_response_errors",
         "AssayResultsPaginatedList": "benchling_api_client.v2.stable.models.assay_results_paginated_list",
         "AssayRun": "benchling_api_client.v2.stable.models.assay_run",
         "AssayRunCreate": "benchling_api_client.v2.stable.models.assay_run_create",
@@ -4631,8 +4725,13 @@ else:
         "AssayRunsArchivalChange": "benchling_api_client.v2.stable.models.assay_runs_archival_change",
         "AssayRunsArchive": "benchling_api_client.v2.stable.models.assay_runs_archive",
         "AssayRunsArchiveReason": "benchling_api_client.v2.stable.models.assay_runs_archive_reason",
+        "AssayRunsBulkCreateErrorResponse": "benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response",
+        "AssayRunsBulkCreateErrorResponseAssayRunsItem": "benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_assay_runs_item",
+        "AssayRunsBulkCreateErrorResponseErrorsItem": "benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_errors_item",
+        "AssayRunsBulkCreateErrorResponseErrorsItemFields": "benchling_api_client.v2.stable.models.assay_runs_bulk_create_error_response_errors_item_fields",
         "AssayRunsBulkCreateRequest": "benchling_api_client.v2.stable.models.assay_runs_bulk_create_request",
         "AssayRunsBulkCreateResponse": "benchling_api_client.v2.stable.models.assay_runs_bulk_create_response",
+        "AssayRunsBulkCreateResponseErrors": "benchling_api_client.v2.stable.models.assay_runs_bulk_create_response_errors",
         "AssayRunsBulkGet": "benchling_api_client.v2.stable.models.assay_runs_bulk_get",
         "AssayRunsPaginatedList": "benchling_api_client.v2.stable.models.assay_runs_paginated_list",
         "AssayRunsUnarchive": "benchling_api_client.v2.stable.models.assay_runs_unarchive",
@@ -5148,6 +5247,13 @@ else:
         "MatchBasesRequestArchiveReason": "benchling_api_client.v2.stable.models.match_bases_request_archive_reason",
         "MatchBasesRequestSort": "benchling_api_client.v2.stable.models.match_bases_request_sort",
         "Measurement": "benchling_api_client.v2.stable.models.measurement",
+        "Membership": "benchling_api_client.v2.stable.models.membership",
+        "MembershipCreate": "benchling_api_client.v2.stable.models.membership_create",
+        "MembershipCreateRole": "benchling_api_client.v2.stable.models.membership_create_role",
+        "MembershipRole": "benchling_api_client.v2.stable.models.membership_role",
+        "MembershipUpdate": "benchling_api_client.v2.stable.models.membership_update",
+        "MembershipUpdateRole": "benchling_api_client.v2.stable.models.membership_update_role",
+        "MembershipsPaginatedList": "benchling_api_client.v2.stable.models.memberships_paginated_list",
         "Mixture": "benchling_api_client.v2.stable.models.mixture",
         "MixtureBulkUpdate": "benchling_api_client.v2.stable.models.mixture_bulk_update",
         "MixtureCreate": "benchling_api_client.v2.stable.models.mixture_create",
@@ -5427,7 +5533,9 @@ else:
         "TableUiBlockType": "benchling_api_client.v2.stable.models.table_ui_block_type",
         "TableUiBlockUpdate": "benchling_api_client.v2.stable.models.table_ui_block_update",
         "Team": "benchling_api_client.v2.stable.models.team",
+        "TeamCreate": "benchling_api_client.v2.stable.models.team_create",
         "TeamSummary": "benchling_api_client.v2.stable.models.team_summary",
+        "TeamUpdate": "benchling_api_client.v2.stable.models.team_update",
         "TeamsPaginatedList": "benchling_api_client.v2.stable.models.teams_paginated_list",
         "TextAppConfigItem": "benchling_api_client.v2.stable.models.text_app_config_item",
         "TextAppConfigItemType": "benchling_api_client.v2.stable.models.text_app_config_item_type",
@@ -5527,6 +5635,8 @@ else:
         "WorkflowTaskGroupCreatedEvent": "benchling_api_client.v2.stable.models.workflow_task_group_created_event",
         "WorkflowTaskGroupCreatedEventEventType": "benchling_api_client.v2.stable.models.workflow_task_group_created_event_event_type",
         "WorkflowTaskGroupExecutionType": "benchling_api_client.v2.stable.models.workflow_task_group_execution_type",
+        "WorkflowTaskGroupMappingCompletedEvent": "benchling_api_client.v2.stable.models.workflow_task_group_mapping_completed_event",
+        "WorkflowTaskGroupMappingCompletedEventEventType": "benchling_api_client.v2.stable.models.workflow_task_group_mapping_completed_event_event_type",
         "WorkflowTaskGroupSummary": "benchling_api_client.v2.stable.models.workflow_task_group_summary",
         "WorkflowTaskGroupUpdate": "benchling_api_client.v2.stable.models.workflow_task_group_update",
         "WorkflowTaskGroupUpdatedWatchersEvent": "benchling_api_client.v2.stable.models.workflow_task_group_updated_watchers_event",

{benchling_sdk-1.15.0a1 → benchling_sdk-1.17.0}/benchling_sdk/models/webhooks/v0/__init__.py

@@ -19,12 +19,8 @@ __all__ = [
     "AssayRunCreatedWebhookV2Type",
     "AssayRunUpdatedFieldsWebhookV2",
     "AssayRunUpdatedFieldsWebhookV2Type",
-    "CanvasInitializeWebhookV0",
-    "CanvasInitializeWebhookV0Type",
     "CanvasInitializeWebhookV2",
     "CanvasInitializeWebhookV2Type",
-    "CanvasInteractionWebhookV0",
-    "CanvasInteractionWebhookV0Type",
     "CanvasInteractionWebhookV2",
     "CanvasInteractionWebhookV2Type",
     "EntityRegisteredWebhookV2",
@@ -37,8 +33,6 @@ __all__ = [
     "EntryUpdatedReviewRecordWebhookV2Type",
     "EventBaseWebhookV2",
     "EventBaseWebhookV2Schematized",
-    "EventCreatedWebhookV0Beta",
-    "EventCreatedWebhookV0BetaType",
     "EventResourceSchema",
     "LifecycleActivateWebhookV0",
     "LifecycleActivateWebhookV0Beta",
@@ -111,6 +105,8 @@ __all__ = [
     "WorkflowTaskCreatedWebhookV2Type",
     "WorkflowTaskGroupCreatedWebhookV2",
     "WorkflowTaskGroupCreatedWebhookV2Type",
+    "WorkflowTaskGroupMappingCompletedWebhookV2",
+    "WorkflowTaskGroupMappingCompletedWebhookV2Type",
     "WorkflowTaskGroupUpdatedWatchersWebhookV2",
     "WorkflowTaskGroupUpdatedWatchersWebhookV2Type",
     "WorkflowTaskUpdatedAssigneeWebhookV2",
@@ -134,12 +130,8 @@ if TYPE_CHECKING:
     import benchling_api_client.webhooks.v0.stable.models.assay_run_created_webhook_v2_type
     import benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2
     import benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2_type
-    import benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v0
-    import benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v0_type
     import benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2
     import benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2_type
-    import benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v0
-    import benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v0_type
     import benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v2
     import benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v2_type
     import benchling_api_client.webhooks.v0.stable.models.entity_registered_webhook_v2
@@ -152,8 +144,6 @@ if TYPE_CHECKING:
     import benchling_api_client.webhooks.v0.stable.models.entry_updated_review_record_webhook_v2_type
     import benchling_api_client.webhooks.v0.stable.models.event_base_webhook_v2
     import benchling_api_client.webhooks.v0.stable.models.event_base_webhook_v2_schematized
-    import benchling_api_client.webhooks.v0.stable.models.event_created_webhook_v0_beta
-    import benchling_api_client.webhooks.v0.stable.models.event_created_webhook_v0_beta_type
     import benchling_api_client.webhooks.v0.stable.models.event_resource_schema
     import benchling_api_client.webhooks.v0.stable.models.lifecycle_activate_webhook_v0
     import benchling_api_client.webhooks.v0.stable.models.lifecycle_activate_webhook_v0_beta
@@ -226,6 +216,8 @@ if TYPE_CHECKING:
     import benchling_api_client.webhooks.v0.stable.models.workflow_task_created_webhook_v2_type
     import benchling_api_client.webhooks.v0.stable.models.workflow_task_group_created_webhook_v2
     import benchling_api_client.webhooks.v0.stable.models.workflow_task_group_created_webhook_v2_type
+    import benchling_api_client.webhooks.v0.stable.models.workflow_task_group_mapping_completed_webhook_v2
+    import benchling_api_client.webhooks.v0.stable.models.workflow_task_group_mapping_completed_webhook_v2_type
     import benchling_api_client.webhooks.v0.stable.models.workflow_task_group_updated_watchers_webhook_v2
     import benchling_api_client.webhooks.v0.stable.models.workflow_task_group_updated_watchers_webhook_v2_type
     import benchling_api_client.webhooks.v0.stable.models.workflow_task_updated_assignee_webhook_v2
@@ -267,24 +259,12 @@ if TYPE_CHECKING:
     AssayRunUpdatedFieldsWebhookV2Type = (
         benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2_type.AssayRunUpdatedFieldsWebhookV2Type
     )
-    CanvasInitializeWebhookV0 = (
-        benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v0.CanvasInitializeWebhookV0
-    )
-    CanvasInitializeWebhookV0Type = (
-        benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v0_type.CanvasInitializeWebhookV0Type
-    )
     CanvasInitializeWebhookV2 = (
         benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2.CanvasInitializeWebhookV2
     )
     CanvasInitializeWebhookV2Type = (
         benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2_type.CanvasInitializeWebhookV2Type
     )
-    CanvasInteractionWebhookV0 = (
-        benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v0.CanvasInteractionWebhookV0
-    )
-    CanvasInteractionWebhookV0Type = (
-        benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v0_type.CanvasInteractionWebhookV0Type
-    )
     CanvasInteractionWebhookV2 = (
         benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v2.CanvasInteractionWebhookV2
     )
@@ -321,12 +301,6 @@ if TYPE_CHECKING:
     EventBaseWebhookV2Schematized = (
         benchling_api_client.webhooks.v0.stable.models.event_base_webhook_v2_schematized.EventBaseWebhookV2Schematized
     )
-    EventCreatedWebhookV0Beta = (
-        benchling_api_client.webhooks.v0.stable.models.event_created_webhook_v0_beta.EventCreatedWebhookV0Beta
-    )
-    EventCreatedWebhookV0BetaType = (
-        benchling_api_client.webhooks.v0.stable.models.event_created_webhook_v0_beta_type.EventCreatedWebhookV0BetaType
-    )
     EventResourceSchema = (
         benchling_api_client.webhooks.v0.stable.models.event_resource_schema.EventResourceSchema
     )
@@ -535,6 +509,12 @@ if TYPE_CHECKING:
     WorkflowTaskGroupCreatedWebhookV2Type = (
         benchling_api_client.webhooks.v0.stable.models.workflow_task_group_created_webhook_v2_type.WorkflowTaskGroupCreatedWebhookV2Type
     )
+    WorkflowTaskGroupMappingCompletedWebhookV2 = (
+        benchling_api_client.webhooks.v0.stable.models.workflow_task_group_mapping_completed_webhook_v2.WorkflowTaskGroupMappingCompletedWebhookV2
+    )
+    WorkflowTaskGroupMappingCompletedWebhookV2Type = (
+        benchling_api_client.webhooks.v0.stable.models.workflow_task_group_mapping_completed_webhook_v2_type.WorkflowTaskGroupMappingCompletedWebhookV2Type
+    )
     WorkflowTaskGroupUpdatedWatchersWebhookV2 = (
         benchling_api_client.webhooks.v0.stable.models.workflow_task_group_updated_watchers_webhook_v2.WorkflowTaskGroupUpdatedWatchersWebhookV2
     )
@@ -578,12 +558,8 @@ else:
         "AssayRunCreatedWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.assay_run_created_webhook_v2_type",
         "AssayRunUpdatedFieldsWebhookV2": "benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2",
         "AssayRunUpdatedFieldsWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.assay_run_updated_fields_webhook_v2_type",
-        "CanvasInitializeWebhookV0": "benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v0",
-        "CanvasInitializeWebhookV0Type": "benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v0_type",
         "CanvasInitializeWebhookV2": "benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2",
         "CanvasInitializeWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.canvas_initialize_webhook_v2_type",
-        "CanvasInteractionWebhookV0": "benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v0",
-        "CanvasInteractionWebhookV0Type": "benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v0_type",
         "CanvasInteractionWebhookV2": "benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v2",
         "CanvasInteractionWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.canvas_interaction_webhook_v2_type",
         "EntityRegisteredWebhookV2": "benchling_api_client.webhooks.v0.stable.models.entity_registered_webhook_v2",
@@ -596,8 +572,6 @@ else:
         "EntryUpdatedReviewRecordWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.entry_updated_review_record_webhook_v2_type",
         "EventBaseWebhookV2": "benchling_api_client.webhooks.v0.stable.models.event_base_webhook_v2",
         "EventBaseWebhookV2Schematized": "benchling_api_client.webhooks.v0.stable.models.event_base_webhook_v2_schematized",
-        "EventCreatedWebhookV0Beta": "benchling_api_client.webhooks.v0.stable.models.event_created_webhook_v0_beta",
-        "EventCreatedWebhookV0BetaType": "benchling_api_client.webhooks.v0.stable.models.event_created_webhook_v0_beta_type",
         "EventResourceSchema": "benchling_api_client.webhooks.v0.stable.models.event_resource_schema",
         "LifecycleActivateWebhookV0": "benchling_api_client.webhooks.v0.stable.models.lifecycle_activate_webhook_v0",
         "LifecycleActivateWebhookV0Beta": "benchling_api_client.webhooks.v0.stable.models.lifecycle_activate_webhook_v0_beta",
@@ -670,6 +644,8 @@ else:
         "WorkflowTaskCreatedWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.workflow_task_created_webhook_v2_type",
         "WorkflowTaskGroupCreatedWebhookV2": "benchling_api_client.webhooks.v0.stable.models.workflow_task_group_created_webhook_v2",
         "WorkflowTaskGroupCreatedWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.workflow_task_group_created_webhook_v2_type",
+        "WorkflowTaskGroupMappingCompletedWebhookV2": "benchling_api_client.webhooks.v0.stable.models.workflow_task_group_mapping_completed_webhook_v2",
+        "WorkflowTaskGroupMappingCompletedWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.workflow_task_group_mapping_completed_webhook_v2_type",
         "WorkflowTaskGroupUpdatedWatchersWebhookV2": "benchling_api_client.webhooks.v0.stable.models.workflow_task_group_updated_watchers_webhook_v2",
         "WorkflowTaskGroupUpdatedWatchersWebhookV2Type": "benchling_api_client.webhooks.v0.stable.models.workflow_task_group_updated_watchers_webhook_v2_type",
         "WorkflowTaskUpdatedAssigneeWebhookV2": "benchling_api_client.webhooks.v0.stable.models.workflow_task_updated_assignee_webhook_v2",

{benchling_sdk-1.15.0a1 → benchling_sdk-1.17.0}/benchling_sdk/services/v2/stable/aa_sequence_service.py

@@ -1,8 +1,10 @@
 from typing import Any, Dict, Iterable, List, Optional, Union
 
+from attr import evolve
 from benchling_api_client.v2.stable.api.aa_sequences import (
     archive_aa_sequences,
     auto_annotate_aa_sequences,
+    back_translate,
     bulk_create_aa_sequences,
     bulk_get_aa_sequences,
     bulk_update_aa_sequences,
@@ -11,6 +13,8 @@ from benchling_api_client.v2.stable.api.aa_sequences import (
     find_matching_regions_aa_sequences,
     get_aa_sequence,
     list_aa_sequences,
+    match_amino_acids_aa_sequences,
+    search_aa_sequences,
     unarchive_aa_sequences,
     update_aa_sequence,
     upsert_aa_sequence,
@@ -39,18 +43,25 @@ from benchling_sdk.models import (
     AaSequencesBulkUpdateRequest,
     AaSequencesBulkUpsertRequest,
     AaSequencesFindMatchingRegion,
+    AaSequencesMatchBases,
     AaSequencesPaginatedList,
+    AaSequencesSearchBases,
     AaSequencesUnarchive,
     AaSequenceUpdate,
     AaSequenceUpsert,
     AsyncTaskLink,
     AutoAnnotateAaSequences,
+    BackTranslate,
     EntityArchiveReason,
     ListAASequencesSort,
 )
 from benchling_sdk.services.v2.base_service import BaseService
 
 
+def _list_results_extractor(body: AaSequencesPaginatedList) -> Optional[List[AaSequence]]:
+    return body.aa_sequences
+
+
 class AaSequenceService(BaseService):
     """
     AA Sequences.
@@ -125,8 +136,7 @@ class AaSequenceService(BaseService):
             author_idsany_of=none_as_unset(optional_array_query_param(author_idsany_of)),
             returning=none_as_unset(optional_array_query_param(returning)),
         )
-        raise_for_status(response)
-        return response  # type: ignore
+        return raise_for_status(response)
 
     def list(
         self,
@@ -186,10 +196,7 @@ class AaSequenceService(BaseService):
                 returning=returning,
             )
 
-        def results_extractor(body: AaSequencesPaginatedList) -> Optional[List[AaSequence]]:
-            return body.aa_sequences
-
-        return PageIterator(api_call, results_extractor)
+        return PageIterator(api_call, _list_results_extractor)
 
     @api_method
     def create(self, aa_sequence: AaSequenceCreate) -> AaSequence:
@@ -326,3 +333,53 @@ class AaSequenceService(BaseService):
             client=self.client, json_body=find_matching_region
         )
         return model_from_detailed(response)
+
+    @api_method
+    def back_translate(self, translate: BackTranslate) -> AsyncTaskLink:
+        """
+        Create back-translated DNA sequences from AA sequences.
+
+        See https://benchling.com/api/v2/reference#/AA%20Sequences/backTranslate
+        """
+        response = back_translate.sync_detailed(client=self.client, json_body=translate)
+        return model_from_detailed(response)
+
+    @api_method
+    def _match_bases_page(self, match_bases: AaSequencesMatchBases) -> Response[AaSequencesPaginatedList]:
+        return raise_for_status(
+            match_amino_acids_aa_sequences.sync_detailed(client=self.client, json_body=match_bases)
+        )
+
+    def match_amino_acids(self, match_bases: AaSequencesMatchBases) -> PageIterator[AaSequence]:
+        """
+        Return AA Sequences that exactly match the provided amino acids.
+
+        See https://benchling.com/api/reference#/AA%20Sequences/matchAminoAcidsAaSequences
+        """
+
+        def api_call(next_token: NextToken) -> Response[AaSequencesPaginatedList]:
+            return self._match_bases_page(evolve(match_bases, next_token=next_token))
+
+        return PageIterator(api_call, _list_results_extractor)
+
+    @api_method
+    def _search_bases_page(
+        self, search_request: AaSequencesSearchBases
+    ) -> Response[AaSequencesPaginatedList]:
+        return raise_for_status(
+            search_aa_sequences.sync_detailed(client=self.client, json_body=search_request)
+        )
+
+    def search(self, search_request: AaSequencesSearchBases) -> PageIterator[AaSequence]:
+        """
+        Return AA Sequences that contain the provided amino acids.
+
+        Search indexing is asynchronous, so results my be not be available immediately after creation.
+
+        See https://benchling.com/api/reference#/AA%20Sequences/searchAaSequences
+        """
+
+        def api_call(next_token: NextToken) -> Response[AaSequencesPaginatedList]:
+            return self._search_bases_page(evolve(search_request, next_token=next_token))
+
+        return PageIterator(api_call, _list_results_extractor)