benchling-sdk 1.12.0a0__tar.gz → 1.13.0a0__tar.gz

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: benchling-sdk
-Version: 1.12.0a0
+Version: 1.13.0a0
 Summary: SDK for interacting with the Benchling Platform.
 License: Apache-2.0
 Author: Benchling Support

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/aa_sequence_service.py

@@ -299,11 +299,16 @@ class AaSequenceService(BaseService):
         return model_from_detailed(response)
 
     @api_method
-    def bulk_upsert(self, body: AaSequencesBulkUpsertRequest) -> AsyncTaskLink:
+    def bulk_upsert(
+        self, body: AaSequencesBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
         """
         Bulk create or update AA sequences.
 
         See https://benchling.com/api/reference#/AA%20Sequences/bulkUpsertAASequences
         """
-        response = bulk_upsert_aa_sequences.sync_detailed(client=self.client, json_body=body)
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_aa_sequences.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
         return model_from_detailed(response)

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/dna_oligo_service.py

@@ -261,11 +261,16 @@ class DnaOligoService(BaseService):
         return model_from_detailed(response)
 
     @api_method
-    def bulk_upsert(self, body: DnaOligosBulkUpsertRequest) -> AsyncTaskLink:
+    def bulk_upsert(
+        self, body: DnaOligosBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
         """
         Bulk create or update DNA Oligos.
 
         See https://benchling.com/api/reference#/DNA%20Oligos/bulkUpsertDnaOligos
         """
-        response = bulk_upsert_dna_oligos.sync_detailed(client=self.client, json_body=body)
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_dna_oligos.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
         return model_from_detailed(response)

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/dna_sequence_service.py

@@ -12,6 +12,8 @@ from benchling_api_client.v2.stable.api.dna_sequences import (
     create_dna_sequence,
     get_dna_sequence,
     list_dna_sequences,
+    match_bases_dna_sequences,
+    search_dna_sequences,
     unarchive_dna_sequences,
     update_dna_sequence,
     upsert_dna_sequence,
@@ -48,6 +50,8 @@ from benchling_sdk.models import (
     DnaSequenceUpsertRequest,
     EntityArchiveReason,
     ListDNASequencesSort,
+    MatchBasesRequest,
+    SearchBasesRequest,
 )
 from benchling_sdk.services.v2.base_service import BaseService
 
@@ -324,11 +328,47 @@ class DnaSequenceService(BaseService):
         return model_from_detailed(response)
 
     @api_method
-    def bulk_upsert(self, body: DnaSequencesBulkUpsertRequest) -> AsyncTaskLink:
+    def bulk_upsert(
+        self, body: DnaSequencesBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
         """
         Bulk create or update DNA sequences.
 
         See https://benchling.com/api/reference#/DNA%20Sequences/bulkUpsertDnaSequences
         """
-        response = bulk_upsert_dna_sequences.sync_detailed(client=self.client, json_body=body)
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_dna_sequences.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def match_bases(self, match_bases_request: MatchBasesRequest) -> DnaSequencesPaginatedList:
+        """
+        Match bases.
+
+        Returns DNA Sequences that exactly match the provided bases.
+
+        See https://benchling.com/api/reference#/DNA%20Sequences/matchBasesDnaSequences
+        """
+        response = match_bases_dna_sequences.sync_detailed(
+            client=self.client,
+            json_body=match_bases_request,
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def search_bases(self, search_bases_request: SearchBasesRequest) -> DnaSequencesPaginatedList:
+        """
+        Search bases.
+
+        Returns DNA Sequences that contain the provided bases.
+        Search indexing is asynchronous, so results may be not be available immediately after creation.
+
+        See https://benchling.com/api/reference#/DNA%20Sequences/searchDnaSequences
+        """
+        response = search_dna_sequences.sync_detailed(
+            client=self.client,
+            json_body=search_bases_request,
+        )
         return model_from_detailed(response)

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/entity_service.py

@@ -1,7 +1,10 @@
+from typing import Iterable, Optional
+
 from benchling_api_client.v2.stable.api.entities import bulk_upsert_entities
 
 from benchling_sdk.helpers.decorators import api_method
 from benchling_sdk.helpers.response_helpers import model_from_detailed
+from benchling_sdk.helpers.serialization_helpers import none_as_unset, optional_array_query_param
 from benchling_sdk.models import AsyncTaskLink, EntitiesBulkUpsertRequest
 from benchling_sdk.services.v2.base_service import BaseService
 
@@ -18,7 +21,9 @@ class EntityService(BaseService):
     """
 
     @api_method
-    def bulk_upsert(self, bulk_upsert: EntitiesBulkUpsertRequest) -> AsyncTaskLink:
+    def bulk_upsert(
+        self, bulk_upsert: EntitiesBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
         """
         Upsert many entities at once.
 
@@ -34,5 +39,8 @@ class EntityService(BaseService):
         If any action fails, the whole operation is canceled and no objects are created or updated.
         See https://benchling.com/api/reference#/Entities/bulkUpsertEntities
         """
-        response = bulk_upsert_entities.sync_detailed(client=self.client, json_body=bulk_upsert)
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_entities.sync_detailed(
+            client=self.client, json_body=bulk_upsert, returning=none_as_unset(returning_string)
+        )
         return model_from_detailed(response)

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/molecule_service.py

@@ -253,11 +253,16 @@ class MoleculeService(BaseService):
         return model_from_detailed(response)
 
     @api_method
-    def bulk_upsert(self, body: MoleculesBulkUpsertRequest) -> AsyncTaskLink:
+    def bulk_upsert(
+        self, body: MoleculesBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
         """
         Bulk create or update Molecules.
 
         See https://benchling.com/api/reference#/Molecules/bulkUpsertMolecules
         """
-        response = bulk_upsert_molecules.sync_detailed(client=self.client, json_body=body)
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_molecules.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
         return model_from_detailed(response)

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/plate_service.py

@@ -90,6 +90,16 @@ class PlateService(BaseService):
         creator_ids: Optional[Iterable[str]] = None,
         archive_reason: Optional[str] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
+        empty_containers: Optional[int] = None,
+        empty_containers_gt: Optional[int] = None,
+        empty_containers_gte: Optional[int] = None,
+        empty_containers_lt: Optional[int] = None,
+        empty_containers_lte: Optional[int] = None,
+        empty_positions: Optional[int] = None,
+        empty_positions_gt: Optional[int] = None,
+        empty_positions_gte: Optional[int] = None,
+        empty_positions_lt: Optional[int] = None,
+        empty_positions_lte: Optional[int] = None,
         timeout_seconds: Optional[float] = None,
         returning: Optional[Iterable[str]] = None
     ) -> Response[PlatesPaginatedList]:
@@ -111,6 +121,16 @@ class PlateService(BaseService):
             namesany_ofcase_sensitive=none_as_unset(optional_array_query_param(names_any_of_case_sensitive)),
             creator_ids=none_as_unset(optional_array_query_param(creator_ids)),
             schema_fields=none_as_unset(schema_fields_query_param(schema_fields)),
+            empty_containers=none_as_unset(empty_containers),
+            empty_containersgt=none_as_unset(empty_containers_gt),
+            empty_containersgte=none_as_unset(empty_containers_gte),
+            empty_containerslt=none_as_unset(empty_containers_lt),
+            empty_containerslte=none_as_unset(empty_containers_lte),
+            empty_positions=none_as_unset(empty_positions),
+            empty_positionsgt=none_as_unset(empty_positions_gt),
+            empty_positionsgte=none_as_unset(empty_positions_gte),
+            empty_positionslt=none_as_unset(empty_positions_lt),
+            empty_positionslte=none_as_unset(empty_positions_lte),
             next_token=none_as_unset(next_token),
             page_size=none_as_unset(page_size),
             returning=none_as_unset(optional_array_query_param(returning)),
@@ -136,6 +156,16 @@ class PlateService(BaseService):
         creator_ids: Optional[Iterable[str]] = None,
         archive_reason: Optional[str] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
+        empty_containers: Optional[int] = None,
+        empty_containers_gt: Optional[int] = None,
+        empty_containers_gte: Optional[int] = None,
+        empty_containers_lt: Optional[int] = None,
+        empty_containers_lte: Optional[int] = None,
+        empty_positions: Optional[int] = None,
+        empty_positions_gt: Optional[int] = None,
+        empty_positions_gte: Optional[int] = None,
+        empty_positions_lt: Optional[int] = None,
+        empty_positions_lte: Optional[int] = None,
         page_size: Optional[int] = None,
         timeout_seconds: Optional[float] = DEFAULT_PLATE_HTTP_TIMEOUT,
         returning: Optional[Iterable[str]] = None
@@ -170,6 +200,16 @@ class PlateService(BaseService):
                 names_any_of_case_sensitive=names_any_of_case_sensitive,
                 creator_ids=creator_ids,
                 schema_fields=schema_fields,
+                empty_containers=empty_containers,
+                empty_containers_gt=empty_containers_gt,
+                empty_containers_gte=empty_containers_gte,
+                empty_containers_lt=empty_containers_lt,
+                empty_containers_lte=empty_containers_lte,
+                empty_positions=empty_positions,
+                empty_positions_gt=empty_positions_gt,
+                empty_positions_gte=empty_positions_gte,
+                empty_positions_lt=empty_positions_lt,
+                empty_positions_lte=empty_positions_lte,
                 next_token=next_token,
                 page_size=page_size,
                 timeout_seconds=timeout_seconds,

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/rna_oligo_service.py

@@ -270,11 +270,16 @@ class RnaOligoService(BaseService):
         return model_from_detailed(response)
 
     @api_method
-    def bulk_upsert(self, body: RnaOligosBulkUpsertRequest) -> AsyncTaskLink:
+    def bulk_upsert(
+        self, body: RnaOligosBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
         """
         Bulk create or update RNA Oligos.
 
         See https://benchling.com/api/reference#/RNA%20Oligos/bulkUpsertRnaOligos
         """
-        response = bulk_upsert_rna_oligos.sync_detailed(client=self.client, json_body=body)
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_rna_oligos.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
         return model_from_detailed(response)

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/rna_sequence_service.py

@@ -11,6 +11,8 @@ from benchling_api_client.v2.stable.api.rna_sequences import (
     create_rna_sequence,
     get_rna_sequence,
     list_rna_sequences,
+    match_bases_rna_sequences,
+    search_rna_sequences,
     unarchive_rna_sequences,
     update_rna_sequence,
 )
@@ -31,6 +33,7 @@ from benchling_sdk.models import (
     AutoAnnotateRnaSequences,
     EntityArchiveReason,
     ListRNASequencesSort,
+    MatchBasesRequest,
     RnaSequence,
     RnaSequenceBulkCreate,
     RnaSequenceBulkUpdate,
@@ -42,6 +45,7 @@ from benchling_sdk.models import (
     RnaSequencesPaginatedList,
     RnaSequencesUnarchive,
     RnaSequenceUpdate,
+    SearchBasesRequest,
 )
 from benchling_sdk.services.v2.base_service import BaseService
 
@@ -315,3 +319,34 @@ class RnaSequenceService(BaseService):
         """
         response = auto_annotate_rna_sequences.sync_detailed(client=self.client, json_body=auto_annotate)
         return model_from_detailed(response)
+
+    @api_method
+    def match_bases(self, match_bases_request: MatchBasesRequest) -> RnaSequencesPaginatedList:
+        """
+        Match bases.
+
+        Returns RNA Sequences that exactly match the provided bases.
+
+        See https://benchling.com/api/reference#/RNA%20Sequences/matchBasesRnaSequences
+        """
+        response = match_bases_rna_sequences.sync_detailed(
+            client=self.client,
+            json_body=match_bases_request,
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def search_bases(self, search_bases_request: SearchBasesRequest) -> RnaSequencesPaginatedList:
+        """
+        Search bases.
+
+        Returns RNA Sequences that contain the provided bases.
+        Search indexing is asynchronous, so results may be not be available immediately after creation.
+
+        See https://benchling.com/api/reference#/RNA%20Sequences/searchRnaSequences
+        """
+        response = search_rna_sequences.sync_detailed(
+            client=self.client,
+            json_body=search_bases_request,
+        )
+        return model_from_detailed(response)

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/benchling_sdk/services/v2/stable/user_service.py

@@ -6,6 +6,7 @@ from benchling_api_client.v2.stable.api.users import (
     create_user,
     get_user,
     get_user_activity,
+    get_user_warehouse_logins,
     list_users,
     update_user,
 )
@@ -19,6 +20,7 @@ from benchling_sdk.helpers.response_helpers import model_from_detailed
 from benchling_sdk.helpers.serialization_helpers import none_as_unset, optional_array_query_param
 from benchling_sdk.models import (
     AsyncTaskLink,
+    GetUserWarehouseLoginsResponse_200,
     ListUsersSort,
     User,
     UserActivity,
@@ -193,3 +195,13 @@ class UserService(BaseService):
         """
         response = get_user_activity.sync_detailed(client=self.client, user_id=user_id)
         return model_from_detailed(response)
+
+    @api_method
+    def get_warehouse_logins(self, user_id: str) -> GetUserWarehouseLoginsResponse_200:
+        """
+        Return the list of warehouse credential summaries for this user.
+
+        See https://benchling.com/api/reference#/Users/getUserWarehouseLogins
+        """
+        response = get_user_warehouse_logins.sync_detailed(client=self.client, user_id=user_id)
+        return model_from_detailed(response)

{benchling_sdk-1.12.0a0 → benchling_sdk-1.13.0a0}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "benchling-sdk"
-version = "1.12.0a0"   # NOTE: This version number is ignored and does not correspond to releases (see README)
+version = "1.13.0a0"   # NOTE: This version number is ignored and does not correspond to releases (see README)
 description = "SDK for interacting with the Benchling Platform."
 authors = ["Benchling Support <support@benchling.com>"]
 packages = [{include = "benchling_sdk"}]