benchling-sdk 1.11.0a5__tar.gz → 1.12.0a0__tar.gz

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: benchling-sdk
-Version: 1.11.0a5
+Version: 1.12.0a0
 Summary: SDK for interacting with the Benchling Platform.
 License: Apache-2.0
 Author: Benchling Support
@@ -17,9 +17,9 @@ Provides-Extra: python-jose
 Requires-Dist: PyYAML (>=6.0,<7.0)
 Requires-Dist: attrs (>=20.1.0,<23)
 Requires-Dist: backoff (>=1.10.0,<2.0.0)
-Requires-Dist: benchling-api-client (==2.0.283)
+Requires-Dist: benchling-api-client (==2.0.287)
 Requires-Dist: certifi (>=2022.12.7)
-Requires-Dist: cryptography (>=41.0.7,<42.0.0) ; extra == "cryptography"
+Requires-Dist: cryptography (>=42.0.0) ; extra == "cryptography"
 Requires-Dist: dataclasses-json (>=0.5.2,<0.6.0)
 Requires-Dist: httpx (>=0.23.0)
 Requires-Dist: jwcrypto (>=1.5.1,<2.0.0)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/benchling.py

@@ -26,6 +26,7 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.stable.dna_oligo_service import DnaOligoService
     from benchling_sdk.services.v2.stable.dna_sequence_service import DnaSequenceService
     from benchling_sdk.services.v2.stable.dropdown_service import DropdownService
+    from benchling_sdk.services.v2.stable.entity_service import EntityService
     from benchling_sdk.services.v2.stable.entry_service import EntryService
     from benchling_sdk.services.v2.stable.event_service import EventService
     from benchling_sdk.services.v2.stable.export_service import ExportService
@@ -362,6 +363,19 @@ class Benchling(object):
         """
         return self.v2.stable.dropdowns
 
+    @property
+    def entities(self) -> EntityService:
+        """
+        Entities.
+
+        Entities include DNA and AA sequences, oligos, molecules, custom entities, and
+        other biological objects in Benchling. Entities support schemas, tags, and aliases,
+        and can be registered.
+
+        See https://benchling.com/api/reference#/Entities
+        """
+        return self.v2.stable.entities
+
     @property
     def entries(self) -> EntryService:
         """

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/models/__init__.py

@@ -687,6 +687,7 @@ __all__ = [
     "MoleculesArchiveReason",
     "MoleculesBulkCreateRequest",
     "MoleculesBulkUpdateRequest",
+    "MoleculesBulkUpsertRequest",
     "MoleculesPaginatedList",
     "MoleculesUnarchive",
     "Monomer",
@@ -1731,6 +1732,7 @@ if TYPE_CHECKING:
     import benchling_api_client.v2.stable.models.molecules_archive_reason
     import benchling_api_client.v2.stable.models.molecules_bulk_create_request
     import benchling_api_client.v2.stable.models.molecules_bulk_update_request
+    import benchling_api_client.v2.stable.models.molecules_bulk_upsert_request
     import benchling_api_client.v2.stable.models.molecules_paginated_list
     import benchling_api_client.v2.stable.models.molecules_unarchive
     import benchling_api_client.v2.stable.models.monomer
@@ -3519,6 +3521,9 @@ if TYPE_CHECKING:
     MoleculesBulkUpdateRequest = (
         benchling_api_client.v2.stable.models.molecules_bulk_update_request.MoleculesBulkUpdateRequest
     )
+    MoleculesBulkUpsertRequest = (
+        benchling_api_client.v2.stable.models.molecules_bulk_upsert_request.MoleculesBulkUpsertRequest
+    )
     MoleculesPaginatedList = (
         benchling_api_client.v2.stable.models.molecules_paginated_list.MoleculesPaginatedList
     )
@@ -4963,6 +4968,7 @@ else:
         "MoleculesArchiveReason": "benchling_api_client.v2.stable.models.molecules_archive_reason",
         "MoleculesBulkCreateRequest": "benchling_api_client.v2.stable.models.molecules_bulk_create_request",
         "MoleculesBulkUpdateRequest": "benchling_api_client.v2.stable.models.molecules_bulk_update_request",
+        "MoleculesBulkUpsertRequest": "benchling_api_client.v2.stable.models.molecules_bulk_upsert_request",
         "MoleculesPaginatedList": "benchling_api_client.v2.stable.models.molecules_paginated_list",
         "MoleculesUnarchive": "benchling_api_client.v2.stable.models.molecules_unarchive",
         "Monomer": "benchling_api_client.v2.stable.models.monomer",

benchling_sdk-1.12.0a0/benchling_sdk/services/v2/beta/v2_beta_aa_sequence_service.py

@@ -0,0 +1,33 @@
+from benchling_api_client.v2.beta.api.aa_sequences import find_matching_regions_aa_sequences
+from benchling_api_client.v2.beta.models.aa_sequences_find_matching_region import (
+    AaSequencesFindMatchingRegion,
+)
+
+from benchling_sdk.helpers.decorators import api_method
+from benchling_sdk.helpers.response_helpers import model_from_detailed
+from benchling_sdk.models import AsyncTaskLink
+from benchling_sdk.services.v2.base_service import BaseService
+
+
+class V2BetaAaSequenceService(BaseService):
+    """
+    V2-Beta AA Sequences.
+
+    AA Sequences are the working units of cells that make everything run (they help make structures, catalyze
+    reactions and allow for signaling - a kind of internal cell communication). On Benchling, these are comprised
+    of a string of amino acids and collections of other attributes, such as annotations.
+
+    See https://benchling.com/api/v2-beta/reference#/AA%20Sequences
+    """
+
+    @api_method
+    def find_matching_regions(self, find_matching_region: AaSequencesFindMatchingRegion) -> AsyncTaskLink:
+        """
+        Find matching regions for AA sequences.
+
+        See https://benchling.com/api/v2-beta/reference#/AA%20Sequences/findMatchingRegionsAaSequences
+        """
+        response = find_matching_regions_aa_sequences.sync_detailed(
+            client=self.client, json_body=find_matching_region
+        )
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/services/v2/stable/aa_sequence_service.py

@@ -6,11 +6,13 @@ from benchling_api_client.v2.stable.api.aa_sequences import (
     bulk_create_aa_sequences,
     bulk_get_aa_sequences,
     bulk_update_aa_sequences,
+    bulk_upsert_aa_sequences,
     create_aa_sequence,
     get_aa_sequence,
     list_aa_sequences,
     unarchive_aa_sequences,
     update_aa_sequence,
+    upsert_aa_sequence,
 )
 from benchling_api_client.v2.types import Response
 
@@ -34,9 +36,11 @@ from benchling_sdk.models import (
     AaSequencesArchive,
     AaSequencesBulkCreateRequest,
     AaSequencesBulkUpdateRequest,
+    AaSequencesBulkUpsertRequest,
     AaSequencesPaginatedList,
     AaSequencesUnarchive,
     AaSequenceUpdate,
+    AaSequenceUpsert,
     AsyncTaskLink,
     AutoAnnotateAaSequences,
     EntityArchiveReason,
@@ -281,3 +285,25 @@ class AaSequenceService(BaseService):
         """
         response = auto_annotate_aa_sequences.sync_detailed(client=self.client, json_body=auto_annotate)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, aa_sequence: AaSequenceUpsert) -> AaSequence:
+        """
+        Create or modify an Amino Acid Sequence.
+
+        See https://benchling.com/api/reference#/AA%20Sequences/upsertAaSequence
+        """
+        response = upsert_aa_sequence.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=aa_sequence
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(self, body: AaSequencesBulkUpsertRequest) -> AsyncTaskLink:
+        """
+        Bulk create or update AA sequences.
+
+        See https://benchling.com/api/reference#/AA%20Sequences/bulkUpsertAASequences
+        """
+        response = bulk_upsert_aa_sequences.sync_detailed(client=self.client, json_body=body)
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/services/v2/stable/custom_entity_service.py

@@ -5,11 +5,13 @@ from benchling_api_client.v2.stable.api.custom_entities import (
     bulk_create_custom_entities,
     bulk_get_custom_entities,
     bulk_update_custom_entities,
+    bulk_upsert_custom_entities,
     create_custom_entity,
     get_custom_entity,
     list_custom_entities,
     unarchive_custom_entities,
     update_custom_entity,
+    upsert_custom_entity,
 )
 from benchling_api_client.v2.types import Response
 
@@ -30,6 +32,7 @@ from benchling_sdk.models import (
     CustomEntitiesArchive,
     CustomEntitiesBulkCreateRequest,
     CustomEntitiesBulkUpdateRequest,
+    CustomEntitiesBulkUpsertRequest,
     CustomEntitiesPaginatedList,
     CustomEntitiesUnarchive,
     CustomEntity,
@@ -37,6 +40,7 @@ from benchling_sdk.models import (
     CustomEntityBulkUpdate,
     CustomEntityCreate,
     CustomEntityUpdate,
+    CustomEntityUpsertRequest,
     EntityArchiveReason,
     ListCustomEntitiesSort,
 )
@@ -266,3 +270,25 @@ class CustomEntityService(BaseService):
         body = CustomEntitiesBulkUpdateRequest(list(entities))
         response = bulk_update_custom_entities.sync_detailed(client=self.client, json_body=body)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, entity: CustomEntityUpsertRequest) -> CustomEntity:
+        """
+        Create or modify a custom entity.
+
+        See https://benchling.com/api/reference#/Custom%20Entities/upsertCustomEntity
+        """
+        response = upsert_custom_entity.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=entity
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(self, body: CustomEntitiesBulkUpsertRequest) -> AsyncTaskLink:
+        """
+        Bulk update custom entities.
+
+        See https://benchling.com/api/reference#/Custom%20Entities/bulkUpsertCustomEntities
+        """
+        response = bulk_upsert_custom_entities.sync_detailed(client=self.client, json_body=body)
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/services/v2/stable/dna_oligo_service.py

@@ -4,11 +4,13 @@ from benchling_api_client.v2.stable.api.dna_oligos import (
     archive_dna_oligos,
     bulk_create_dna_oligos,
     bulk_update_dna_oligos,
+    bulk_upsert_dna_oligos,
     create_dna_oligo,
     get_dna_oligo,
     list_dna_oligos,
     unarchive_dna_oligos,
     update_dna_oligo,
+    upsert_dna_oligo,
 )
 from benchling_api_client.v2.types import Response
 
@@ -31,11 +33,13 @@ from benchling_sdk.models import (
     DnaOligosArchive,
     DnaOligosBulkCreateRequest,
     DnaOligosBulkUpdateRequest,
+    DnaOligosBulkUpsertRequest,
     DnaOligosPaginatedList,
     DnaOligosUnarchive,
     DnaOligoUpdate,
     EntityArchiveReason,
     ListDNAOligosSort,
+    OligoUpsertRequest,
 )
 from benchling_sdk.services.v2.base_service import BaseService
 
@@ -243,3 +247,25 @@ class DnaOligoService(BaseService):
         body = DnaOligosBulkUpdateRequest(list(dna_oligos))
         response = bulk_update_dna_oligos.sync_detailed(client=self.client, json_body=body)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, dna_oligo: OligoUpsertRequest) -> DnaOligo:
+        """
+        Create or modify a DNA Oligo.
+
+        See https://benchling.com/api/reference#/DNA%20Oligos/upsertDNAOligo
+        """
+        response = upsert_dna_oligo.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=dna_oligo
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(self, body: DnaOligosBulkUpsertRequest) -> AsyncTaskLink:
+        """
+        Bulk create or update DNA Oligos.
+
+        See https://benchling.com/api/reference#/DNA%20Oligos/bulkUpsertDnaOligos
+        """
+        response = bulk_upsert_dna_oligos.sync_detailed(client=self.client, json_body=body)
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/services/v2/stable/dna_sequence_service.py

@@ -8,11 +8,13 @@ from benchling_api_client.v2.stable.api.dna_sequences import (
     bulk_create_dna_sequences,
     bulk_get_dna_sequences,
     bulk_update_dna_sequences,
+    bulk_upsert_dna_sequences,
     create_dna_sequence,
     get_dna_sequence,
     list_dna_sequences,
     unarchive_dna_sequences,
     update_dna_sequence,
+    upsert_dna_sequence,
 )
 from benchling_api_client.v2.types import Response
 
@@ -39,9 +41,11 @@ from benchling_sdk.models import (
     DnaSequencesArchive,
     DnaSequencesBulkCreateRequest,
     DnaSequencesBulkUpdateRequest,
+    DnaSequencesBulkUpsertRequest,
     DnaSequencesPaginatedList,
     DnaSequencesUnarchive,
     DnaSequenceUpdate,
+    DnaSequenceUpsertRequest,
     EntityArchiveReason,
     ListDNASequencesSort,
 )
@@ -306,3 +310,25 @@ class DnaSequenceService(BaseService):
         """
         response = auto_annotate_dna_sequences.sync_detailed(client=self.client, json_body=auto_annotate)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, dna_sequence: DnaSequenceUpsertRequest) -> DnaSequence:
+        """
+        Create or modify a DNA sequence.
+
+        See https://benchling.com/api/reference#/DNA%20Sequences/upsertDNASequence
+        """
+        response = upsert_dna_sequence.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=dna_sequence
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(self, body: DnaSequencesBulkUpsertRequest) -> AsyncTaskLink:
+        """
+        Bulk create or update DNA sequences.
+
+        See https://benchling.com/api/reference#/DNA%20Sequences/bulkUpsertDnaSequences
+        """
+        response = bulk_upsert_dna_sequences.sync_detailed(client=self.client, json_body=body)
+        return model_from_detailed(response)

benchling_sdk-1.11.0a5/benchling_sdk/services/v2/beta/v2_beta_entity_service.py → benchling_sdk-1.12.0a0/benchling_sdk/services/v2/stable/entity_service.py

@@ -1,21 +1,20 @@
-from benchling_api_client.v2.beta.api.entities import bulk_upsert_entities
-from benchling_api_client.v2.beta.models.entities_bulk_upsert_request import EntitiesBulkUpsertRequest
+from benchling_api_client.v2.stable.api.entities import bulk_upsert_entities
 
 from benchling_sdk.helpers.decorators import api_method
 from benchling_sdk.helpers.response_helpers import model_from_detailed
-from benchling_sdk.models import AsyncTaskLink
+from benchling_sdk.models import AsyncTaskLink, EntitiesBulkUpsertRequest
 from benchling_sdk.services.v2.base_service import BaseService
 
 
-class V2BetaEntityService(BaseService):
+class EntityService(BaseService):
     """
-    V2-Beta Entities.
+    Entities.
 
     Entities include DNA and AA sequences, oligos, molecules, custom entities, and
     other biological objects in Benchling. Entities support schemas, tags, and aliases,
     and can be registered.
 
-    See https://benchling.com/api/v2-beta/reference#/Entities
+    See https://benchling.com/api/reference#/Entities
     """
 
     @api_method
@@ -33,7 +32,7 @@ class V2BetaEntityService(BaseService):
         4. Entities are registered, using the provided name and entity registry ID.
 
         If any action fails, the whole operation is canceled and no objects are created or updated.
-        See https://benchling.com/api/v2-beta/reference#/Entities/bulkUpsertEntities
+        See https://benchling.com/api/reference#/Entities/bulkUpsertEntities
         """
         response = bulk_upsert_entities.sync_detailed(client=self.client, json_body=bulk_upsert)
         return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/services/v2/stable/molecule_service.py

@@ -4,23 +4,14 @@ from benchling_api_client.v2.stable.api.molecules import (
     archive_molecules,
     bulk_create_molecules,
     bulk_update_molecules,
+    bulk_upsert_molecules,
     create_molecule,
     get_molecule,
     list_molecules,
     unarchive_molecules,
     update_molecule,
+    upsert_molecule,
 )
-from benchling_api_client.v2.stable.models.list_molecules_sort import ListMoleculesSort
-from benchling_api_client.v2.stable.models.molecule_bulk_update import MoleculeBulkUpdate
-from benchling_api_client.v2.stable.models.molecule_create import MoleculeCreate
-from benchling_api_client.v2.stable.models.molecule_update import MoleculeUpdate
-from benchling_api_client.v2.stable.models.molecules_archival_change import MoleculesArchivalChange
-from benchling_api_client.v2.stable.models.molecules_archive import MoleculesArchive
-from benchling_api_client.v2.stable.models.molecules_archive_reason import MoleculesArchiveReason
-from benchling_api_client.v2.stable.models.molecules_bulk_create_request import MoleculesBulkCreateRequest
-from benchling_api_client.v2.stable.models.molecules_bulk_update_request import MoleculesBulkUpdateRequest
-from benchling_api_client.v2.stable.models.molecules_paginated_list import MoleculesPaginatedList
-from benchling_api_client.v2.stable.models.molecules_unarchive import MoleculesUnarchive
 from benchling_api_client.v2.types import Response
 
 from benchling_sdk.errors import raise_for_status
@@ -34,7 +25,23 @@ from benchling_sdk.helpers.serialization_helpers import (
     optional_array_query_param,
     schema_fields_query_param,
 )
-from benchling_sdk.models import AsyncTaskLink, Molecule
+from benchling_sdk.models import (
+    AsyncTaskLink,
+    ListMoleculesSort,
+    Molecule,
+    MoleculeBulkUpdate,
+    MoleculeCreate,
+    MoleculesArchivalChange,
+    MoleculesArchive,
+    MoleculesArchiveReason,
+    MoleculesBulkCreateRequest,
+    MoleculesBulkUpdateRequest,
+    MoleculesBulkUpsertRequest,
+    MoleculesPaginatedList,
+    MoleculesUnarchive,
+    MoleculeUpdate,
+    MoleculeUpsertRequest,
+)
 from benchling_sdk.services.v2.base_service import BaseService
 
 
@@ -232,3 +239,25 @@ class MoleculeService(BaseService):
         body = MoleculesBulkUpdateRequest(list(molecules))
         response = bulk_update_molecules.sync_detailed(client=self.client, json_body=body)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, molecule: MoleculeUpsertRequest) -> Molecule:
+        """
+        Create or modify a Molecule.
+
+        See https://benchling.com/api/reference#/Molecules/upsertMolecule
+        """
+        response = upsert_molecule.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=molecule
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(self, body: MoleculesBulkUpsertRequest) -> AsyncTaskLink:
+        """
+        Bulk create or update Molecules.
+
+        See https://benchling.com/api/reference#/Molecules/bulkUpsertMolecules
+        """
+        response = bulk_upsert_molecules.sync_detailed(client=self.client, json_body=body)
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/services/v2/stable/rna_oligo_service.py

@@ -4,11 +4,13 @@ from benchling_api_client.v2.stable.api.rna_oligos import (
     archive_rna_oligos,
     bulk_create_rna_oligos,
     bulk_update_rna_oligos,
+    bulk_upsert_rna_oligos,
     create_rna_oligo,
     get_rna_oligo,
     list_rna_oligos,
     unarchive_rna_oligos,
     update_rna_oligo,
+    upsert_rna_oligo,
 )
 from benchling_api_client.v2.types import Response
 
@@ -26,6 +28,7 @@ from benchling_sdk.models import (
     AsyncTaskLink,
     EntityArchiveReason,
     ListRNAOligosSort,
+    OligoUpsertRequest,
     RnaOligo,
     RnaOligoBulkUpdate,
     RnaOligoCreate,
@@ -33,6 +36,7 @@ from benchling_sdk.models import (
     RnaOligosArchive,
     RnaOligosBulkCreateRequest,
     RnaOligosBulkUpdateRequest,
+    RnaOligosBulkUpsertRequest,
     RnaOligosPaginatedList,
     RnaOligosUnarchive,
     RnaOligoUpdate,
@@ -252,3 +256,25 @@ class RnaOligoService(BaseService):
         body = RnaOligosBulkUpdateRequest(list(rna_oligos))
         response = bulk_update_rna_oligos.sync_detailed(client=self.client, json_body=body)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, rna_oligo: OligoUpsertRequest) -> RnaOligo:
+        """
+        Create or modify a RNA Oligo.
+
+        See https://benchling.com/api/reference#/RNA%20Oligos/upsertRNAOligo
+        """
+        response = upsert_rna_oligo.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=rna_oligo
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(self, body: RnaOligosBulkUpsertRequest) -> AsyncTaskLink:
+        """
+        Bulk create or update RNA Oligos.
+
+        See https://benchling.com/api/reference#/RNA%20Oligos/bulkUpsertRnaOligos
+        """
+        response = bulk_upsert_rna_oligos.sync_detailed(client=self.client, json_body=body)
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0a0}/benchling_sdk/services/v2/v2_beta_service.py

@@ -13,14 +13,9 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.beta.v2_beta_aa_sequence_service import V2BetaAaSequenceService
     from benchling_sdk.services.v2.beta.v2_beta_app_service import V2BetaAppService
     from benchling_sdk.services.v2.beta.v2_beta_collaboration_service import V2BetaCollaborationService
-    from benchling_sdk.services.v2.beta.v2_beta_custom_entity_service import V2BetaCustomEntityService
-    from benchling_sdk.services.v2.beta.v2_beta_dna_oligo_service import V2BetaDnaOligoService
-    from benchling_sdk.services.v2.beta.v2_beta_dna_sequence_service import V2BetaDnaSequenceService
-    from benchling_sdk.services.v2.beta.v2_beta_entity_service import V2BetaEntityService
     from benchling_sdk.services.v2.beta.v2_beta_entry_service import V2BetaEntryService
     from benchling_sdk.services.v2.beta.v2_beta_folder_service import V2BetaFolderService
     from benchling_sdk.services.v2.beta.v2_beta_project_service import V2BetaProjectService
-    from benchling_sdk.services.v2.beta.v2_beta_rna_oligo_service import V2BetaRnaOligoService
     from benchling_sdk.services.v2.beta.v2_beta_worklist_service import V2BetaWorklistService
 
 
@@ -36,15 +31,10 @@ class V2BetaService(BaseService):
     _aa_sequence_service: Optional[V2BetaAaSequenceService]
     _app_service: Optional[V2BetaAppService]
     _collaboration_service: Optional[V2BetaCollaborationService]
-    _custom_entity_service: Optional[V2BetaCustomEntityService]
     _data_frame_service: Optional[V2BetaDataFrameService]
-    _dna_oligo_service: Optional[V2BetaDnaOligoService]
-    _dna_sequence_service: Optional[V2BetaDnaSequenceService]
-    _entity_service: Optional[V2BetaEntityService]
     _entry_service: Optional[V2BetaEntryService]
     _folder_service: Optional[V2BetaFolderService]
     _project_service: Optional[V2BetaProjectService]
-    _rna_oligo_service: Optional[V2BetaRnaOligoService]
     _worklist_service: Optional[V2BetaWorklistService]
     _beta_client: Client
 
@@ -60,15 +50,10 @@ class V2BetaService(BaseService):
         self._aa_sequence_service = None
         self._app_service = None
         self._collaboration_service = None
-        self._custom_entity_service = None
         self._data_frame_service = None
-        self._dna_sequence_service = None
-        self._dna_oligo_service = None
-        self._entity_service = None
         self._entry_service = None
         self._folder_service = None
         self._project_service = None
-        self._rna_oligo_service = None
         self._worklist_service = None
 
     @property
@@ -120,22 +105,6 @@ class V2BetaService(BaseService):
             self._collaboration_service = V2BetaCollaborationService(self._beta_client, self.retry_strategy)
         return self._collaboration_service
 
-    @property
-    def custom_entities(self) -> V2BetaCustomEntityService:
-        """
-        V2-Beta Custom Entities.
-
-        Benchling supports custom entities for biological entities that are neither sequences or proteins. Custom
-        entities must have an entity schema set and can have both schema fields and custom fields.
-
-        See https://benchling.com/api/v2-beta/reference#/Custom%20Entities
-        """
-        if self._custom_entity_service is None:
-            from benchling_sdk.services.v2.beta.v2_beta_custom_entity_service import V2BetaCustomEntityService
-
-            self._custom_entity_service = V2BetaCustomEntityService(self._beta_client, self.retry_strategy)
-        return self._custom_entity_service
-
     @property
     def data_frames(self) -> V2BetaDataFrameService:
         """
@@ -151,55 +120,6 @@ class V2BetaService(BaseService):
             self._data_frame_service = V2BetaDataFrameService(self._beta_client, self.retry_strategy)
         return self._data_frame_service
 
-    @property
-    def dna_oligos(self) -> V2BetaDnaOligoService:
-        """
-        V2-Beta DNA Oligos.
-
-        DNA Oligos are short linear DNA sequences that can be attached as primers to full DNA sequences. Just like other
-        entities, they support schemas, tags, and aliases.
-
-        See https://benchling.com/api/v2-beta/reference#/DNA%20Oligos
-        """
-        if self._dna_oligo_service is None:
-            from benchling_sdk.services.v2.beta.v2_beta_dna_oligo_service import V2BetaDnaOligoService
-
-            self._dna_oligo_service = V2BetaDnaOligoService(self._beta_client, self.retry_strategy)
-        return self._dna_oligo_service
-
-    @property
-    def dna_sequences(self) -> V2BetaDnaSequenceService:
-        """
-        V2-Beta DNA Sequences.
-
-        DNA sequences are the bread and butter of the Benchling Molecular Biology suite. On Benchling, these are
-        comprised of a string of nucleotides and collections of other attributes, such as annotations and primers.
-
-        See https://benchling.com/api/v2-beta/reference#/DNA%20Sequences
-        """
-        if self._dna_sequence_service is None:
-            from benchling_sdk.services.v2.beta.v2_beta_dna_sequence_service import V2BetaDnaSequenceService
-
-            self._dna_sequence_service = V2BetaDnaSequenceService(self._beta_client, self.retry_strategy)
-        return self._dna_sequence_service
-
-    @property
-    def entities(self) -> V2BetaEntityService:
-        """
-        V2-Beta Entities.
-
-        Entities include DNA and AA sequences, oligos, molecules, custom entities, and
-        other biological objects in Benchling. Entities support schemas, tags, and aliases,
-        and can be registered.
-
-        See https://benchling.com/api/v2-beta/reference#/Entities
-        """
-        if self._entity_service is None:
-            from benchling_sdk.services.v2.beta.v2_beta_entity_service import V2BetaEntityService
-
-            self._entity_service = V2BetaEntityService(self._beta_client, self.retry_strategy)
-        return self._entity_service
-
     @property
     def entries(self) -> V2BetaEntryService:
         """
@@ -245,22 +165,6 @@ class V2BetaService(BaseService):
             self._project_service = V2BetaProjectService(self._beta_client, self.retry_strategy)
         return self._project_service
 
-    @property
-    def rna_oligos(self) -> V2BetaRnaOligoService:
-        """
-        V2-Beta RNA Oligos.
-
-        RNA Oligos are short linear RNA sequences that can be attached as primers to full DNA sequences. Just like other
-        entities, they support schemas, tags, and aliases.
-
-        See https://benchling.com/api/v2-beta/reference#/RNA%20Oligos
-        """
-        if self._rna_oligo_service is None:
-            from benchling_sdk.services.v2.beta.v2_beta_rna_oligo_service import V2BetaRnaOligoService
-
-            self._rna_oligo_service = V2BetaRnaOligoService(self._beta_client, self.retry_strategy)
-        return self._rna_oligo_service
-
     @property
     def worklists(self) -> V2BetaWorklistService:
         """