benchling-sdk 1.11.0a5__tar.gz → 1.12.0__tar.gz

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: benchling-sdk
-Version: 1.11.0a5
+Version: 1.12.0
 Summary: SDK for interacting with the Benchling Platform.
 License: Apache-2.0
 Author: Benchling Support
@@ -17,9 +17,9 @@ Provides-Extra: python-jose
 Requires-Dist: PyYAML (>=6.0,<7.0)
 Requires-Dist: attrs (>=20.1.0,<23)
 Requires-Dist: backoff (>=1.10.0,<2.0.0)
-Requires-Dist: benchling-api-client (==2.0.283)
+Requires-Dist: benchling-api-client (==2.0.287)
 Requires-Dist: certifi (>=2022.12.7)
-Requires-Dist: cryptography (>=41.0.7,<42.0.0) ; extra == "cryptography"
+Requires-Dist: cryptography (>=42.0.0) ; extra == "cryptography"
 Requires-Dist: dataclasses-json (>=0.5.2,<0.6.0)
 Requires-Dist: httpx (>=0.23.0)
 Requires-Dist: jwcrypto (>=1.5.1,<2.0.0)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/benchling.py

@@ -26,6 +26,7 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.stable.dna_oligo_service import DnaOligoService
     from benchling_sdk.services.v2.stable.dna_sequence_service import DnaSequenceService
     from benchling_sdk.services.v2.stable.dropdown_service import DropdownService
+    from benchling_sdk.services.v2.stable.entity_service import EntityService
     from benchling_sdk.services.v2.stable.entry_service import EntryService
     from benchling_sdk.services.v2.stable.event_service import EventService
     from benchling_sdk.services.v2.stable.export_service import ExportService
@@ -362,6 +363,19 @@ class Benchling(object):
         """
         return self.v2.stable.dropdowns
 
+    @property
+    def entities(self) -> EntityService:
+        """
+        Entities.
+
+        Entities include DNA and AA sequences, oligos, molecules, custom entities, and
+        other biological objects in Benchling. Entities support schemas, tags, and aliases,
+        and can be registered.
+
+        See https://benchling.com/api/reference#/Entities
+        """
+        return self.v2.stable.entities
+
     @property
     def entries(self) -> EntryService:
         """

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/models/__init__.py

@@ -687,6 +687,7 @@ __all__ = [
     "MoleculesArchiveReason",
     "MoleculesBulkCreateRequest",
     "MoleculesBulkUpdateRequest",
+    "MoleculesBulkUpsertRequest",
     "MoleculesPaginatedList",
     "MoleculesUnarchive",
     "Monomer",
@@ -1731,6 +1732,7 @@ if TYPE_CHECKING:
     import benchling_api_client.v2.stable.models.molecules_archive_reason
     import benchling_api_client.v2.stable.models.molecules_bulk_create_request
     import benchling_api_client.v2.stable.models.molecules_bulk_update_request
+    import benchling_api_client.v2.stable.models.molecules_bulk_upsert_request
     import benchling_api_client.v2.stable.models.molecules_paginated_list
     import benchling_api_client.v2.stable.models.molecules_unarchive
     import benchling_api_client.v2.stable.models.monomer
@@ -3519,6 +3521,9 @@ if TYPE_CHECKING:
     MoleculesBulkUpdateRequest = (
         benchling_api_client.v2.stable.models.molecules_bulk_update_request.MoleculesBulkUpdateRequest
     )
+    MoleculesBulkUpsertRequest = (
+        benchling_api_client.v2.stable.models.molecules_bulk_upsert_request.MoleculesBulkUpsertRequest
+    )
     MoleculesPaginatedList = (
         benchling_api_client.v2.stable.models.molecules_paginated_list.MoleculesPaginatedList
     )
@@ -4963,6 +4968,7 @@ else:
         "MoleculesArchiveReason": "benchling_api_client.v2.stable.models.molecules_archive_reason",
         "MoleculesBulkCreateRequest": "benchling_api_client.v2.stable.models.molecules_bulk_create_request",
         "MoleculesBulkUpdateRequest": "benchling_api_client.v2.stable.models.molecules_bulk_update_request",
+        "MoleculesBulkUpsertRequest": "benchling_api_client.v2.stable.models.molecules_bulk_upsert_request",
         "MoleculesPaginatedList": "benchling_api_client.v2.stable.models.molecules_paginated_list",
         "MoleculesUnarchive": "benchling_api_client.v2.stable.models.molecules_unarchive",
         "Monomer": "benchling_api_client.v2.stable.models.monomer",

benchling_sdk-1.12.0/benchling_sdk/services/v2/beta/v2_beta_aa_sequence_service.py

@@ -0,0 +1,33 @@
+from benchling_api_client.v2.beta.api.aa_sequences import find_matching_regions_aa_sequences
+from benchling_api_client.v2.beta.models.aa_sequences_find_matching_region import (
+    AaSequencesFindMatchingRegion,
+)
+
+from benchling_sdk.helpers.decorators import api_method
+from benchling_sdk.helpers.response_helpers import model_from_detailed
+from benchling_sdk.models import AsyncTaskLink
+from benchling_sdk.services.v2.base_service import BaseService
+
+
+class V2BetaAaSequenceService(BaseService):
+    """
+    V2-Beta AA Sequences.
+
+    AA Sequences are the working units of cells that make everything run (they help make structures, catalyze
+    reactions and allow for signaling - a kind of internal cell communication). On Benchling, these are comprised
+    of a string of amino acids and collections of other attributes, such as annotations.
+
+    See https://benchling.com/api/v2-beta/reference#/AA%20Sequences
+    """
+
+    @api_method
+    def find_matching_regions(self, find_matching_region: AaSequencesFindMatchingRegion) -> AsyncTaskLink:
+        """
+        Find matching regions for AA sequences.
+
+        See https://benchling.com/api/v2-beta/reference#/AA%20Sequences/findMatchingRegionsAaSequences
+        """
+        response = find_matching_regions_aa_sequences.sync_detailed(
+            client=self.client, json_body=find_matching_region
+        )
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/services/v2/stable/aa_sequence_service.py

@@ -6,11 +6,13 @@ from benchling_api_client.v2.stable.api.aa_sequences import (
     bulk_create_aa_sequences,
     bulk_get_aa_sequences,
     bulk_update_aa_sequences,
+    bulk_upsert_aa_sequences,
     create_aa_sequence,
     get_aa_sequence,
     list_aa_sequences,
     unarchive_aa_sequences,
     update_aa_sequence,
+    upsert_aa_sequence,
 )
 from benchling_api_client.v2.types import Response
 
@@ -34,9 +36,11 @@ from benchling_sdk.models import (
     AaSequencesArchive,
     AaSequencesBulkCreateRequest,
     AaSequencesBulkUpdateRequest,
+    AaSequencesBulkUpsertRequest,
     AaSequencesPaginatedList,
     AaSequencesUnarchive,
     AaSequenceUpdate,
+    AaSequenceUpsert,
     AsyncTaskLink,
     AutoAnnotateAaSequences,
     EntityArchiveReason,
@@ -281,3 +285,30 @@ class AaSequenceService(BaseService):
         """
         response = auto_annotate_aa_sequences.sync_detailed(client=self.client, json_body=auto_annotate)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, aa_sequence: AaSequenceUpsert) -> AaSequence:
+        """
+        Create or modify an Amino Acid Sequence.
+
+        See https://benchling.com/api/reference#/AA%20Sequences/upsertAaSequence
+        """
+        response = upsert_aa_sequence.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=aa_sequence
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(
+        self, body: AaSequencesBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
+        """
+        Bulk create or update AA sequences.
+
+        See https://benchling.com/api/reference#/AA%20Sequences/bulkUpsertAASequences
+        """
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_aa_sequences.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/services/v2/stable/custom_entity_service.py

@@ -5,11 +5,13 @@ from benchling_api_client.v2.stable.api.custom_entities import (
     bulk_create_custom_entities,
     bulk_get_custom_entities,
     bulk_update_custom_entities,
+    bulk_upsert_custom_entities,
     create_custom_entity,
     get_custom_entity,
     list_custom_entities,
     unarchive_custom_entities,
     update_custom_entity,
+    upsert_custom_entity,
 )
 from benchling_api_client.v2.types import Response
 
@@ -30,6 +32,7 @@ from benchling_sdk.models import (
     CustomEntitiesArchive,
     CustomEntitiesBulkCreateRequest,
     CustomEntitiesBulkUpdateRequest,
+    CustomEntitiesBulkUpsertRequest,
     CustomEntitiesPaginatedList,
     CustomEntitiesUnarchive,
     CustomEntity,
@@ -37,6 +40,7 @@ from benchling_sdk.models import (
     CustomEntityBulkUpdate,
     CustomEntityCreate,
     CustomEntityUpdate,
+    CustomEntityUpsertRequest,
     EntityArchiveReason,
     ListCustomEntitiesSort,
 )
@@ -266,3 +270,25 @@ class CustomEntityService(BaseService):
         body = CustomEntitiesBulkUpdateRequest(list(entities))
         response = bulk_update_custom_entities.sync_detailed(client=self.client, json_body=body)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, entity: CustomEntityUpsertRequest) -> CustomEntity:
+        """
+        Create or modify a custom entity.
+
+        See https://benchling.com/api/reference#/Custom%20Entities/upsertCustomEntity
+        """
+        response = upsert_custom_entity.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=entity
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(self, body: CustomEntitiesBulkUpsertRequest) -> AsyncTaskLink:
+        """
+        Bulk update custom entities.
+
+        See https://benchling.com/api/reference#/Custom%20Entities/bulkUpsertCustomEntities
+        """
+        response = bulk_upsert_custom_entities.sync_detailed(client=self.client, json_body=body)
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/services/v2/stable/dna_oligo_service.py

@@ -4,11 +4,13 @@ from benchling_api_client.v2.stable.api.dna_oligos import (
     archive_dna_oligos,
     bulk_create_dna_oligos,
     bulk_update_dna_oligos,
+    bulk_upsert_dna_oligos,
     create_dna_oligo,
     get_dna_oligo,
     list_dna_oligos,
     unarchive_dna_oligos,
     update_dna_oligo,
+    upsert_dna_oligo,
 )
 from benchling_api_client.v2.types import Response
 
@@ -31,11 +33,13 @@ from benchling_sdk.models import (
     DnaOligosArchive,
     DnaOligosBulkCreateRequest,
     DnaOligosBulkUpdateRequest,
+    DnaOligosBulkUpsertRequest,
     DnaOligosPaginatedList,
     DnaOligosUnarchive,
     DnaOligoUpdate,
     EntityArchiveReason,
     ListDNAOligosSort,
+    OligoUpsertRequest,
 )
 from benchling_sdk.services.v2.base_service import BaseService
 
@@ -243,3 +247,30 @@ class DnaOligoService(BaseService):
         body = DnaOligosBulkUpdateRequest(list(dna_oligos))
         response = bulk_update_dna_oligos.sync_detailed(client=self.client, json_body=body)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, dna_oligo: OligoUpsertRequest) -> DnaOligo:
+        """
+        Create or modify a DNA Oligo.
+
+        See https://benchling.com/api/reference#/DNA%20Oligos/upsertDNAOligo
+        """
+        response = upsert_dna_oligo.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=dna_oligo
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(
+        self, body: DnaOligosBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
+        """
+        Bulk create or update DNA Oligos.
+
+        See https://benchling.com/api/reference#/DNA%20Oligos/bulkUpsertDnaOligos
+        """
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_dna_oligos.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/services/v2/stable/dna_sequence_service.py

@@ -8,11 +8,15 @@ from benchling_api_client.v2.stable.api.dna_sequences import (
     bulk_create_dna_sequences,
     bulk_get_dna_sequences,
     bulk_update_dna_sequences,
+    bulk_upsert_dna_sequences,
     create_dna_sequence,
     get_dna_sequence,
     list_dna_sequences,
+    match_bases_dna_sequences,
+    search_dna_sequences,
     unarchive_dna_sequences,
     update_dna_sequence,
+    upsert_dna_sequence,
 )
 from benchling_api_client.v2.types import Response
 
@@ -39,11 +43,15 @@ from benchling_sdk.models import (
     DnaSequencesArchive,
     DnaSequencesBulkCreateRequest,
     DnaSequencesBulkUpdateRequest,
+    DnaSequencesBulkUpsertRequest,
     DnaSequencesPaginatedList,
     DnaSequencesUnarchive,
     DnaSequenceUpdate,
+    DnaSequenceUpsertRequest,
     EntityArchiveReason,
     ListDNASequencesSort,
+    MatchBasesRequest,
+    SearchBasesRequest,
 )
 from benchling_sdk.services.v2.base_service import BaseService
 
@@ -306,3 +314,61 @@ class DnaSequenceService(BaseService):
         """
         response = auto_annotate_dna_sequences.sync_detailed(client=self.client, json_body=auto_annotate)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, dna_sequence: DnaSequenceUpsertRequest) -> DnaSequence:
+        """
+        Create or modify a DNA sequence.
+
+        See https://benchling.com/api/reference#/DNA%20Sequences/upsertDNASequence
+        """
+        response = upsert_dna_sequence.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=dna_sequence
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(
+        self, body: DnaSequencesBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
+        """
+        Bulk create or update DNA sequences.
+
+        See https://benchling.com/api/reference#/DNA%20Sequences/bulkUpsertDnaSequences
+        """
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_dna_sequences.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def match_bases(self, match_bases_request: MatchBasesRequest) -> DnaSequencesPaginatedList:
+        """
+        Match bases.
+
+        Returns DNA Sequences that exactly match the provided bases.
+
+        See https://benchling.com/api/reference#/DNA%20Sequences/matchBasesDnaSequences
+        """
+        response = match_bases_dna_sequences.sync_detailed(
+            client=self.client,
+            json_body=match_bases_request,
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def search_bases(self, search_bases_request: SearchBasesRequest) -> DnaSequencesPaginatedList:
+        """
+        Search bases.
+
+        Returns DNA Sequences that contain the provided bases.
+        Search indexing is asynchronous, so results may be not be available immediately after creation.
+
+        See https://benchling.com/api/reference#/DNA%20Sequences/searchDnaSequences
+        """
+        response = search_dna_sequences.sync_detailed(
+            client=self.client,
+            json_body=search_bases_request,
+        )
+        return model_from_detailed(response)

benchling_sdk-1.11.0a5/benchling_sdk/services/v2/beta/v2_beta_entity_service.py → benchling_sdk-1.12.0/benchling_sdk/services/v2/stable/entity_service.py

@@ -1,25 +1,29 @@
-from benchling_api_client.v2.beta.api.entities import bulk_upsert_entities
-from benchling_api_client.v2.beta.models.entities_bulk_upsert_request import EntitiesBulkUpsertRequest
+from typing import Iterable, Optional
+
+from benchling_api_client.v2.stable.api.entities import bulk_upsert_entities
 
 from benchling_sdk.helpers.decorators import api_method
 from benchling_sdk.helpers.response_helpers import model_from_detailed
-from benchling_sdk.models import AsyncTaskLink
+from benchling_sdk.helpers.serialization_helpers import none_as_unset, optional_array_query_param
+from benchling_sdk.models import AsyncTaskLink, EntitiesBulkUpsertRequest
 from benchling_sdk.services.v2.base_service import BaseService
 
 
-class V2BetaEntityService(BaseService):
+class EntityService(BaseService):
     """
-    V2-Beta Entities.
+    Entities.
 
     Entities include DNA and AA sequences, oligos, molecules, custom entities, and
     other biological objects in Benchling. Entities support schemas, tags, and aliases,
     and can be registered.
 
-    See https://benchling.com/api/v2-beta/reference#/Entities
+    See https://benchling.com/api/reference#/Entities
     """
 
     @api_method
-    def bulk_upsert(self, bulk_upsert: EntitiesBulkUpsertRequest) -> AsyncTaskLink:
+    def bulk_upsert(
+        self, bulk_upsert: EntitiesBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
         """
         Upsert many entities at once.
 
@@ -33,7 +37,10 @@ class V2BetaEntityService(BaseService):
         4. Entities are registered, using the provided name and entity registry ID.
 
         If any action fails, the whole operation is canceled and no objects are created or updated.
-        See https://benchling.com/api/v2-beta/reference#/Entities/bulkUpsertEntities
+        See https://benchling.com/api/reference#/Entities/bulkUpsertEntities
         """
-        response = bulk_upsert_entities.sync_detailed(client=self.client, json_body=bulk_upsert)
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_entities.sync_detailed(
+            client=self.client, json_body=bulk_upsert, returning=none_as_unset(returning_string)
+        )
         return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/services/v2/stable/molecule_service.py

@@ -4,23 +4,14 @@ from benchling_api_client.v2.stable.api.molecules import (
     archive_molecules,
     bulk_create_molecules,
     bulk_update_molecules,
+    bulk_upsert_molecules,
     create_molecule,
     get_molecule,
     list_molecules,
     unarchive_molecules,
     update_molecule,
+    upsert_molecule,
 )
-from benchling_api_client.v2.stable.models.list_molecules_sort import ListMoleculesSort
-from benchling_api_client.v2.stable.models.molecule_bulk_update import MoleculeBulkUpdate
-from benchling_api_client.v2.stable.models.molecule_create import MoleculeCreate
-from benchling_api_client.v2.stable.models.molecule_update import MoleculeUpdate
-from benchling_api_client.v2.stable.models.molecules_archival_change import MoleculesArchivalChange
-from benchling_api_client.v2.stable.models.molecules_archive import MoleculesArchive
-from benchling_api_client.v2.stable.models.molecules_archive_reason import MoleculesArchiveReason
-from benchling_api_client.v2.stable.models.molecules_bulk_create_request import MoleculesBulkCreateRequest
-from benchling_api_client.v2.stable.models.molecules_bulk_update_request import MoleculesBulkUpdateRequest
-from benchling_api_client.v2.stable.models.molecules_paginated_list import MoleculesPaginatedList
-from benchling_api_client.v2.stable.models.molecules_unarchive import MoleculesUnarchive
 from benchling_api_client.v2.types import Response
 
 from benchling_sdk.errors import raise_for_status
@@ -34,7 +25,23 @@ from benchling_sdk.helpers.serialization_helpers import (
     optional_array_query_param,
     schema_fields_query_param,
 )
-from benchling_sdk.models import AsyncTaskLink, Molecule
+from benchling_sdk.models import (
+    AsyncTaskLink,
+    ListMoleculesSort,
+    Molecule,
+    MoleculeBulkUpdate,
+    MoleculeCreate,
+    MoleculesArchivalChange,
+    MoleculesArchive,
+    MoleculesArchiveReason,
+    MoleculesBulkCreateRequest,
+    MoleculesBulkUpdateRequest,
+    MoleculesBulkUpsertRequest,
+    MoleculesPaginatedList,
+    MoleculesUnarchive,
+    MoleculeUpdate,
+    MoleculeUpsertRequest,
+)
 from benchling_sdk.services.v2.base_service import BaseService
 
 
@@ -232,3 +239,30 @@ class MoleculeService(BaseService):
         body = MoleculesBulkUpdateRequest(list(molecules))
         response = bulk_update_molecules.sync_detailed(client=self.client, json_body=body)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, molecule: MoleculeUpsertRequest) -> Molecule:
+        """
+        Create or modify a Molecule.
+
+        See https://benchling.com/api/reference#/Molecules/upsertMolecule
+        """
+        response = upsert_molecule.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=molecule
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(
+        self, body: MoleculesBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
+        """
+        Bulk create or update Molecules.
+
+        See https://benchling.com/api/reference#/Molecules/bulkUpsertMolecules
+        """
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_molecules.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
+        return model_from_detailed(response)

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/services/v2/stable/plate_service.py

@@ -90,6 +90,16 @@ class PlateService(BaseService):
         creator_ids: Optional[Iterable[str]] = None,
         archive_reason: Optional[str] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
+        empty_containers: Optional[int] = None,
+        empty_containers_gt: Optional[int] = None,
+        empty_containers_gte: Optional[int] = None,
+        empty_containers_lt: Optional[int] = None,
+        empty_containers_lte: Optional[int] = None,
+        empty_positions: Optional[int] = None,
+        empty_positions_gt: Optional[int] = None,
+        empty_positions_gte: Optional[int] = None,
+        empty_positions_lt: Optional[int] = None,
+        empty_positions_lte: Optional[int] = None,
         timeout_seconds: Optional[float] = None,
         returning: Optional[Iterable[str]] = None
     ) -> Response[PlatesPaginatedList]:
@@ -111,6 +121,16 @@ class PlateService(BaseService):
             namesany_ofcase_sensitive=none_as_unset(optional_array_query_param(names_any_of_case_sensitive)),
             creator_ids=none_as_unset(optional_array_query_param(creator_ids)),
             schema_fields=none_as_unset(schema_fields_query_param(schema_fields)),
+            empty_containers=none_as_unset(empty_containers),
+            empty_containersgt=none_as_unset(empty_containers_gt),
+            empty_containersgte=none_as_unset(empty_containers_gte),
+            empty_containerslt=none_as_unset(empty_containers_lt),
+            empty_containerslte=none_as_unset(empty_containers_lte),
+            empty_positions=none_as_unset(empty_positions),
+            empty_positionsgt=none_as_unset(empty_positions_gt),
+            empty_positionsgte=none_as_unset(empty_positions_gte),
+            empty_positionslt=none_as_unset(empty_positions_lt),
+            empty_positionslte=none_as_unset(empty_positions_lte),
             next_token=none_as_unset(next_token),
             page_size=none_as_unset(page_size),
             returning=none_as_unset(optional_array_query_param(returning)),
@@ -136,6 +156,16 @@ class PlateService(BaseService):
         creator_ids: Optional[Iterable[str]] = None,
         archive_reason: Optional[str] = None,
         schema_fields: Optional[Dict[str, Any]] = None,
+        empty_containers: Optional[int] = None,
+        empty_containers_gt: Optional[int] = None,
+        empty_containers_gte: Optional[int] = None,
+        empty_containers_lt: Optional[int] = None,
+        empty_containers_lte: Optional[int] = None,
+        empty_positions: Optional[int] = None,
+        empty_positions_gt: Optional[int] = None,
+        empty_positions_gte: Optional[int] = None,
+        empty_positions_lt: Optional[int] = None,
+        empty_positions_lte: Optional[int] = None,
         page_size: Optional[int] = None,
         timeout_seconds: Optional[float] = DEFAULT_PLATE_HTTP_TIMEOUT,
         returning: Optional[Iterable[str]] = None
@@ -170,6 +200,16 @@ class PlateService(BaseService):
                 names_any_of_case_sensitive=names_any_of_case_sensitive,
                 creator_ids=creator_ids,
                 schema_fields=schema_fields,
+                empty_containers=empty_containers,
+                empty_containers_gt=empty_containers_gt,
+                empty_containers_gte=empty_containers_gte,
+                empty_containers_lt=empty_containers_lt,
+                empty_containers_lte=empty_containers_lte,
+                empty_positions=empty_positions,
+                empty_positions_gt=empty_positions_gt,
+                empty_positions_gte=empty_positions_gte,
+                empty_positions_lt=empty_positions_lt,
+                empty_positions_lte=empty_positions_lte,
                 next_token=next_token,
                 page_size=page_size,
                 timeout_seconds=timeout_seconds,

{benchling_sdk-1.11.0a5 → benchling_sdk-1.12.0}/benchling_sdk/services/v2/stable/rna_oligo_service.py

@@ -4,11 +4,13 @@ from benchling_api_client.v2.stable.api.rna_oligos import (
     archive_rna_oligos,
     bulk_create_rna_oligos,
     bulk_update_rna_oligos,
+    bulk_upsert_rna_oligos,
     create_rna_oligo,
     get_rna_oligo,
     list_rna_oligos,
     unarchive_rna_oligos,
     update_rna_oligo,
+    upsert_rna_oligo,
 )
 from benchling_api_client.v2.types import Response
 
@@ -26,6 +28,7 @@ from benchling_sdk.models import (
     AsyncTaskLink,
     EntityArchiveReason,
     ListRNAOligosSort,
+    OligoUpsertRequest,
     RnaOligo,
     RnaOligoBulkUpdate,
     RnaOligoCreate,
@@ -33,6 +36,7 @@ from benchling_sdk.models import (
     RnaOligosArchive,
     RnaOligosBulkCreateRequest,
     RnaOligosBulkUpdateRequest,
+    RnaOligosBulkUpsertRequest,
     RnaOligosPaginatedList,
     RnaOligosUnarchive,
     RnaOligoUpdate,
@@ -252,3 +256,30 @@ class RnaOligoService(BaseService):
         body = RnaOligosBulkUpdateRequest(list(rna_oligos))
         response = bulk_update_rna_oligos.sync_detailed(client=self.client, json_body=body)
         return model_from_detailed(response)
+
+    @api_method
+    def upsert(self, entity_registry_id: str, rna_oligo: OligoUpsertRequest) -> RnaOligo:
+        """
+        Create or modify a RNA Oligo.
+
+        See https://benchling.com/api/reference#/RNA%20Oligos/upsertRNAOligo
+        """
+        response = upsert_rna_oligo.sync_detailed(
+            client=self.client, entity_registry_id=entity_registry_id, json_body=rna_oligo
+        )
+        return model_from_detailed(response)
+
+    @api_method
+    def bulk_upsert(
+        self, body: RnaOligosBulkUpsertRequest, returning: Optional[Iterable[str]] = None
+    ) -> AsyncTaskLink:
+        """
+        Bulk create or update RNA Oligos.
+
+        See https://benchling.com/api/reference#/RNA%20Oligos/bulkUpsertRnaOligos
+        """
+        returning_string = optional_array_query_param(returning)
+        response = bulk_upsert_rna_oligos.sync_detailed(
+            client=self.client, json_body=body, returning=none_as_unset(returning_string)
+        )
+        return model_from_detailed(response)