bella-companion 0.0.20__tar.gz → 0.0.22__tar.gz

{bella_companion-0.0.20 → bella_companion-0.0.22}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bella-companion
-Version: 0.0.20
+Version: 0.0.22
 Summary: 
 Author: gabriele-marino
 Author-email: gabmarino.8601@gmail.com

{bella_companion-0.0.20 → bella_companion-0.0.22}/bella_companion/eucovid/beast_configs/MLP.xml

@@ -93,6 +93,7 @@
         <state spec="State" storeEvery="5000">            
             <stateNode id="treeBDMMPrime" spec="RandomTree" taxa="@alignment" populationModel="@popFunc" trait="@dateTraitSet"/>
             <stateNode idref="processLength"/>
+            <stateNode idref="Re"/>
             <stateNode idref="samplingProportion"/>
             <plate var="n" range="$(layersRange)">
                 <stateNode spec="RealParameter" id="migrationW$(n)" value="0"/>

{bella_companion-0.0.20 → bella_companion-0.0.22}/bella_companion/eucovid/run_beast.py

@@ -47,6 +47,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "Nonparametric",
+        mem_per_cpu="12000",
     )
 
     os.makedirs(output_dir / "all-predictors-GLM", exist_ok=True)
@@ -61,6 +62,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "all-predictors-GLM",
+        mem_per_cpu="12000",
     )
 
     os.makedirs(output_dir / "flights-GLM", exist_ok=True)
@@ -75,6 +77,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "flights-GLM",
+        mem_per_cpu="12000",
     )
 
     os.makedirs(output_dir / "all-predictors-MLP", exist_ok=True)
@@ -90,6 +93,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "all-predictors-MLP",
+        mem_per_cpu="12000",
     )
 
     os.makedirs(output_dir / "flights-MLP", exist_ok=True)
@@ -105,6 +109,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "flights-MLP",
+        mem_per_cpu="12000",
     )
 
     with open(base_output_dir / "eucovid_job_ids.json", "w") as f:

{bella_companion-0.0.20 → bella_companion-0.0.22}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "bella-companion"
-version = "0.0.20"
+version = "0.0.22"
 description = ""
 authors = ["gabriele-marino <gabmarino.8601@gmail.com>"]