bella-companion 0.0.0__tar.gz → 0.0.1__tar.gz

{bella_companion-0.0.0 → bella_companion-0.0.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bella-companion
-Version: 0.0.0
+Version: 0.0.1
 Summary: 
 Author: gabriele-marino
 Author-email: gabmarino.8601@gmail.com
@@ -10,4 +10,4 @@ Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Requires-Dist: dotenv (>=0.9.9,<0.10.0)
-Requires-Dist: phylogenie (>=2.1.21,<3.0.0)
+Requires-Dist: phylogenie (>=2.1.15,<3.0.0)

bella_companion-0.0.1/bella_companion/cli.py

@@ -0,0 +1,23 @@
+import argparse
+
+from dotenv import load_dotenv
+from bella_companion.simulations import generate_data
+
+
+def main():
+    load_dotenv()
+
+    parser = argparse.ArgumentParser(
+        prog="bella",
+        description="Companion tool with experiments and evaluation for Bayesian Evolutionary Layered Learning Architectures (BELLA) BEAST2 package.",
+    )
+
+    subparsers = parser.add_subparsers(dest="command", required=True)
+
+    gen_sim_data_parser = subparsers.add_parser(
+        "generate-simulations-data", help="Generate simulation data"
+    )
+    gen_sim_data_parser.set_defaults(func=generate_data)
+
+    args = parser.parse_args()
+    args.func()

bella_companion-0.0.1/bella_companion/simulations/__init__.py

@@ -0,0 +1,3 @@
+from bella_companion.simulations.generate_data import generate_data
+
+__all__ = ["generate_data"]

{bella_companion-0.0.0 → bella_companion-0.0.1}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "bella-companion"
-version = "0.0.0"
+version = "0.0.1"
 description = ""
 authors = ["gabriele-marino <gabmarino.8601@gmail.com>"]
 
@@ -8,7 +8,10 @@ authors = ["gabriele-marino <gabmarino.8601@gmail.com>"]
 python = "^3.10"
 
 dotenv = "^0.9.9"
-phylogenie = "^2.1.21"
+phylogenie = "^2.1.15"
+
+[tool.poetry.scripts]
+bella = "bella_companion.cli:main"
 
 [tool.pyright]
 typeCheckingMode = "strict"

bella_companion-0.0.0/bella_companion/cli.py

@@ -1,24 +0,0 @@
-import argparse
-
-from dotenv import load_dotenv
-
-
-def main():
-    load_dotenv()
-
-    parser = argparse.ArgumentParser(prog="bella")
-    subparsers = parser.add_subparsers(dest="command")
-
-    gen_sim_data_parser = subparsers.add_parser("generate-simulations-data")
-    generate_simulations_data_parser.set_defaults(func=generate_simulations_data)
-
-    args = parser.parse_args()
-    if hasattr(args, "func"):
-        args.func(args)
-    else:
-        parser.print_help()
-
-
-def generate_simulations_data(args):
-    print("Generating simulations data...")
-    # your logic here