bed-reader 1.2.0__tar.gz → 1.2.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. {bed_reader-1.2.0 → bed_reader-1.2.1}/CHANGELOG.md +4 -0
  2. {bed_reader-1.2.0 → bed_reader-1.2.1}/Cargo.lock +1 -1
  3. {bed_reader-1.2.0 → bed_reader-1.2.1}/Cargo.toml +1 -1
  4. {bed_reader-1.2.0 → bed_reader-1.2.1}/PKG-INFO +1 -1
  5. {bed_reader-1.2.0 → bed_reader-1.2.1}/pyproject.toml +1 -1
  6. {bed_reader-1.2.0 → bed_reader-1.2.1}/uv.lock +1 -1
  7. {bed_reader-1.2.0 → bed_reader-1.2.1}/.github/dependabot.yml +0 -0
  8. {bed_reader-1.2.0 → bed_reader-1.2.1}/.github/workflows/ci.yml +0 -0
  9. {bed_reader-1.2.0 → bed_reader-1.2.1}/.github/workflows/docs.yml +0 -0
  10. {bed_reader-1.2.0 → bed_reader-1.2.1}/.github/workflows/release.yml +0 -0
  11. {bed_reader-1.2.0 → bed_reader-1.2.1}/.gitignore +0 -0
  12. {bed_reader-1.2.0 → bed_reader-1.2.1}/AUTHORS.txt +0 -0
  13. {bed_reader-1.2.0 → bed_reader-1.2.1}/LICENSE.md +0 -0
  14. {bed_reader-1.2.0 → bed_reader-1.2.1}/README-rust.md +0 -0
  15. {bed_reader-1.2.0 → bed_reader-1.2.1}/README.md +0 -0
  16. {bed_reader-1.2.0 → bed_reader-1.2.1}/RELEASING.md +0 -0
  17. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/__init__.py +0 -0
  18. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/_open_bed.py +0 -0
  19. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/_sample_data.py +0 -0
  20. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/_to_bed.py +0 -0
  21. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/__init__.py +0 -0
  22. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/benchmark/bench2.ipynb +0 -0
  23. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/benchmark/benchmark.py +0 -0
  24. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/500x400_o640_array.memmap +0 -0
  25. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/badfile.bed +0 -0
  26. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/empty.bed +0 -0
  27. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/plink_sim_10s_100v_10pmiss.bed +0 -0
  28. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/plink_sim_10s_100v_10pmiss.bim +0 -0
  29. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/plink_sim_10s_100v_10pmiss.fam +0 -0
  30. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.bad_bim +0 -0
  31. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.bed +0 -0
  32. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.bim +0 -0
  33. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.bim_bad_positions.bim +0 -0
  34. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.deb +0 -0
  35. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.fam +0 -0
  36. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.fam_bad +0 -0
  37. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.maf +0 -0
  38. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small.mib +0 -0
  39. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small2_array.memmap +0 -0
  40. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small_array.memmap +0 -0
  41. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small_no_bim.bed +0 -0
  42. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small_no_bim.fam +0 -0
  43. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small_no_fam.bed +0 -0
  44. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small_no_fam.bim +0 -0
  45. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small_too_short.bed +0 -0
  46. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small_too_short.bim +0 -0
  47. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/small_too_short.fam +0 -0
  48. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/smallmode0.bed +0 -0
  49. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/smallmode0.bim +0 -0
  50. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/smallmode0.fam +0 -0
  51. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/smallmodebad.bed +0 -0
  52. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/some_missing.bed +0 -0
  53. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/some_missing.bim +0 -0
  54. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/some_missing.fam +0 -0
  55. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/some_missing.properties.npz +0 -0
  56. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/some_missing.val.npy +0 -0
  57. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/sparse.bed +0 -0
  58. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/sparse.bim +0 -0
  59. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/sparse.fam +0 -0
  60. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/toydata.5chrom.bed +0 -0
  61. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/toydata.5chrom.bim +0 -0
  62. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/data/toydata.5chrom.fam +0 -0
  63. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/registry.txt +0 -0
  64. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/test_file_dot.py +0 -0
  65. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/test_open_bed.py +0 -0
  66. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/test_open_bed_cloud.py +0 -0
  67. {bed_reader-1.2.0 → bed_reader-1.2.1}/bed_reader/tests/test_opt_dep.py +0 -0
  68. {bed_reader-1.2.0 → bed_reader-1.2.1}/build.rs +0 -0
  69. {bed_reader-1.2.0 → bed_reader-1.2.1}/doc/Makefile +0 -0
  70. {bed_reader-1.2.0 → bed_reader-1.2.1}/doc/make +0 -0
  71. {bed_reader-1.2.0 → bed_reader-1.2.1}/doc/make.bat +0 -0
  72. {bed_reader-1.2.0 → bed_reader-1.2.1}/doc/source/_static/placeholder.txt +0 -0
  73. {bed_reader-1.2.0 → bed_reader-1.2.1}/doc/source/cloud_urls.rst +0 -0
  74. {bed_reader-1.2.0 → bed_reader-1.2.1}/doc/source/conf.py +0 -0
  75. {bed_reader-1.2.0 → bed_reader-1.2.1}/doc/source/index.rst +0 -0
  76. {bed_reader-1.2.0 → bed_reader-1.2.1}/examples/cloud.rs +0 -0
  77. {bed_reader-1.2.0 → bed_reader-1.2.1}/examples/no_cloud.rs +0 -0
  78. {bed_reader-1.2.0 → bed_reader-1.2.1}/scripts/verify_sdist_wheel.py +0 -0
  79. {bed_reader-1.2.0 → bed_reader-1.2.1}/setpath.bat +0 -0
  80. {bed_reader-1.2.0 → bed_reader-1.2.1}/specs/PYTHON_3_15_WINDOWS_ARM64_SUPPORT_SPEC.md +0 -0
  81. {bed_reader-1.2.0 → bed_reader-1.2.1}/src/bed_cloud.rs +0 -0
  82. {bed_reader-1.2.0 → bed_reader-1.2.1}/src/lib.rs +0 -0
  83. {bed_reader-1.2.0 → bed_reader-1.2.1}/src/python_module.rs +0 -0
  84. {bed_reader-1.2.0 → bed_reader-1.2.1}/src/supplemental_documents/cloud_urls_etc.md +0 -0
  85. {bed_reader-1.2.0 → bed_reader-1.2.1}/src/supplemental_documents/options_etc.md +0 -0
  86. {bed_reader-1.2.0 → bed_reader-1.2.1}/src/tests.rs +0 -0
  87. {bed_reader-1.2.0 → bed_reader-1.2.1}/tests/tests_api.rs +0 -0
  88. {bed_reader-1.2.0 → bed_reader-1.2.1}/tests/tests_api_cloud.rs +0 -0
  89. {bed_reader-1.2.0 → bed_reader-1.2.1}/useful.md +0 -0
{bed_reader-1.2.0 → bed_reader-1.2.1}/CHANGELOG.md RENAMED
@@ -5,6 +5,10 @@ All notable changes to this project will be documented in this file.
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  The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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  and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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+ ## [1.2.1] - 2026-11-13
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+
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+ * Fix GitHub history.
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+
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  ## [1.2.0] - 2026-11-13
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  - Require Python 3.11 or later and prepare Python 3.15 wheels with PyO3 0.30.1,
{bed_reader-1.2.0 → bed_reader-1.2.1}/Cargo.lock RENAMED
@@ -141,7 +141,7 @@ checksum = "ac07cdecf99051d9a5238b80f35af32cdeba5b336e55d957b318b50137e18da5"
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  [[package]]
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  name = "bed-reader"
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- version = "1.2.0"
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+ version = "1.2.1"
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  dependencies = [
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  "anyhow",
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  "anyinput",
{bed_reader-1.2.0 → bed_reader-1.2.1}/Cargo.toml RENAMED
@@ -1,5 +1,5 @@
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  [package]
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- version = "1.2.0"
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+ version = "1.2.1"
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  name = "bed-reader"
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  description = "Read and write the PLINK BED format, simply and efficiently."
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  repository = "https://github.com/fastlmm/bed-reader"
{bed_reader-1.2.0 → bed_reader-1.2.1}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: bed-reader
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- Version: 1.2.0
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+ Version: 1.2.1
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  Classifier: Programming Language :: Python
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
{bed_reader-1.2.0 → bed_reader-1.2.1}/pyproject.toml RENAMED
@@ -1,5 +1,5 @@
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  [project]
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- version = "1.2.0"
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+ version = "1.2.1"
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  name = "bed-reader"
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  requires-python = ">=3.11"
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  readme = "README.md"
{bed_reader-1.2.0 → bed_reader-1.2.1}/uv.lock RENAMED
@@ -57,7 +57,7 @@ wheels = [
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  [[package]]
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  name = "bed-reader"
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- version = "1.2.0"
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+ version = "1.2.1"
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  source = { editable = "." }
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  dependencies = [
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  { name = "numpy", version = "2.4.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" },
{bed_reader-1.2.0 → bed_reader-1.2.1}/.gitignore RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/AUTHORS.txt RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/LICENSE.md RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/README-rust.md RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/README.md RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/RELEASING.md RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/build.rs RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/doc/Makefile RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/doc/make RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/doc/make.bat RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/examples/cloud.rs RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/setpath.bat RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/src/bed_cloud.rs RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/src/lib.rs RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/src/tests.rs RENAMED
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{bed_reader-1.2.0 → bed_reader-1.2.1}/useful.md RENAMED
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