bed-reader 1.0.6__tar.gz → 1.1.0__tar.gz

{bed_reader-1.0.6 → bed_reader-1.1.0}/.github/workflows/ci.yml

@@ -11,6 +11,13 @@ on:
     
 env:
   CARGO_TERM_COLOR: always
+  PYTHON_VERSIONS: |
+    3.10
+    3.11
+    3.12
+    3.13
+    3.14
+  PYTHON_VERSIONS_ARGS: "-i python3.10 -i python3.11 -i python3.12 -i python3.13 -i python3.14"
 
 permissions:
   contents: read
@@ -22,13 +29,13 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
+        os: [ubuntu-latest, windows-latest, macos-15, macos-15-intel]
     runs-on: ${{ matrix.os }}
     steps:
       - name: Checkout
         uses: actions/checkout@v4
       - name: Set up Rust (Pinned Version)
-        uses: dtolnay/rust-toolchain@1.81.0
+        uses: dtolnay/rust-toolchain@1.83.0
         with:
           components: clippy, rustfmt, rust-src
       - name: Run Clippy (strict for this pinned version of Rust)
@@ -46,28 +53,32 @@ jobs:
   
   
   macos:
-    runs-on: macos-13
     strategy:
       matrix:
-        target: [x86_64, aarch64]
+        include:
+          - target: x86_64
+            os: macos-15-intel
+            deployment-target: "10.12"
+          - target: aarch64
+            os: macos-15
+            deployment-target: "11.0"
+    runs-on: ${{ matrix.os }}
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
-        with:
-          python-version: |
-            3.10
-            3.11
-            3.12
-            3.13
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.PYTHON_VERSIONS }}
       - name: Build wheels
+        env:
+          MACOSX_DEPLOYMENT_TARGET: ${{ matrix.deployment-target }}
         uses: PyO3/maturin-action@v1
         with:
           target: ${{ matrix.target }}
-          args: --release --out dist --find-interpreter
+          args: --release --out dist ${{ env.PYTHON_VERSIONS_ARGS }}
       - name: Upload wheels
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
-          name: wheels
+          name: wheels-macos-${{ matrix.target }}
           path: dist
           
   linux:
@@ -76,14 +87,10 @@ jobs:
       matrix:
         target: [x86_64, aarch64]
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
-        with:
-          python-version: |
-            3.10
-            3.11
-            3.12
-            3.13
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.PYTHON_VERSIONS }}
 
       - name: Install cross-compilation dependencies
         if: matrix.target == 'aarch64'
@@ -99,7 +106,7 @@ jobs:
         uses: PyO3/maturin-action@v1
         with:
           target: ${{ matrix.target }}
-          args: --release --out dist -i python3.10 -i python3.11 -i python3.12 -i python3.13
+          args: --release --out dist ${{ env.PYTHON_VERSIONS_ARGS }}
           manylinux: auto
 
       - name: Build wheels for x86_64
@@ -107,13 +114,13 @@ jobs:
         uses: PyO3/maturin-action@v1
         with:
           target: ${{ matrix.target }}
-          args: --release --out dist -i -i python3.10 -i python3.11 -i python3.12 -i python3.13
+          args: --release --out dist ${{ env.PYTHON_VERSIONS_ARGS }}
           manylinux: auto
 
       - name: Upload wheels
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
-          name: wheels
+          name: wheels-linux-${{ matrix.target }}
           path: dist
           
   windows:
@@ -122,64 +129,86 @@ jobs:
       matrix:
         target: [x64]
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
-        with:
-          python-version: |
-            3.10
-            3.11
-            3.12
-            3.13
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.PYTHON_VERSIONS }}
           architecture: ${{ matrix.target }}
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
           target: ${{ matrix.target }}
-          args: --release --out dist --find-interpreter
+          args: --release --out dist ${{ env.PYTHON_VERSIONS_ARGS }}
       - name: Upload wheels
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
-          name: wheels
+          name: wheels-windows-${{ matrix.target }}
           path: dist
         
   sdist:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Build sdist
         uses: PyO3/maturin-action@v1
         with:
           command: sdist
           args: --out dist
       - name: Upload sdist
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
-          name: wheels
+          name: wheels-sdist
           path: dist
 
+  merge_artifacts:
+    name: Merge Artifacts
+    needs: [macos, linux, windows, sdist]
+    runs-on: ubuntu-latest
+    steps:
+      - name: Create merged directory
+        run: mkdir -p merged_dist
+        
+      - name: Download all artifacts
+        uses: actions/download-artifact@v4
+        with:
+          path: artifacts
+          pattern: wheels-*
+          merge-multiple: true
+          
+      - name: List downloaded artifacts
+        run: find artifacts -type f | sort
+        
+      - name: Copy artifacts to merged directory
+        run: cp -r artifacts/* merged_dist/
+        
+      - name: Upload merged artifacts
+        uses: actions/upload-artifact@v4
+        with:
+          name: wheels-all
+          path: merged_dist
+
   test_python:
     name: Test Python
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10", "3.11", "3.12", "3.13"]
-        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
+        python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
+        os: [ubuntu-latest, windows-latest, macos-15, macos-15-intel]
     runs-on: ${{ matrix.os }}
     steps:
     - name: Checkout
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
     - name: Install Rust
-      uses: actions-rs/toolchain@v1
+      uses: dtolnay/rust-toolchain@stable
       with:
-        toolchain: stable
-        override: true
+        components: clippy, rustfmt, rust-src
     - name: Install the latest version of uv
       uses: astral-sh/setup-uv@v3
     - name: Install Python ${{ matrix.python-version }}
       run: uv python install ${{ matrix.python-version }}
     - name: Pinned Ruff
-      run:  uvx ruff@0.6.9 check bed_reader
-    - name: Lastest Ruff (just to check for warnings)
+      run:  uvx ruff@0.15.16 check bed_reader
+    - name: Latest Ruff (just to check for warnings)
       run: uvx ruff@latest check bed_reader || echo "Ignoring warnings from the latest version of ruff"
     - name: Install minimal dependencies
       run: uv sync --extra min_dev

{bed_reader-1.0.6 → bed_reader-1.1.0}/CHANGELOG.md

@@ -5,6 +5,10 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.1.0] - 2026-06-04
+
+- Add support for Python 3.14.
+
 ## [1.06] - 2024-10-17
 
 - Add support for Python 3.13. Fix minor reported bug.