bed-reader 1.0.4b2__tar.gz → 1.0.5__tar.gz

{bed_reader-1.0.4b2 → bed_reader-1.0.5}/.github/workflows/ci.yml

@@ -22,7 +22,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest, macos-12, windows-latest]
+        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
     runs-on: ${{ matrix.os }}
     steps:
       - name: Checkout
@@ -39,7 +39,7 @@ jobs:
   
   
   macos:
-    runs-on: macos-12
+    runs-on: macos-13
     strategy:
       matrix:
         target: [x86_64, aarch64]
@@ -48,7 +48,6 @@ jobs:
       - uses: actions/setup-python@v4
         with:
           python-version: |
-            3.8
             3.9
             3.10
             3.11
@@ -58,7 +57,6 @@ jobs:
         with:
           target: ${{ matrix.target }}
           args: --release --out dist --find-interpreter
-          sccache: 'true'
       - name: Upload wheels
         uses: actions/upload-artifact@v3
         with:
@@ -69,24 +67,42 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        target: [x86_64]
+        target: [x86_64, aarch64]
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
         with:
           python-version: |
-            3.8
             3.9
             3.10
             3.11
             3.12
-      - name: Build wheels
+
+      - name: Install cross-compilation dependencies
+        if: matrix.target == 'aarch64'
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y gcc-aarch64-linux-gnu
+          
+      - name: Build wheels for aarch64
+        if: matrix.target == 'aarch64'
+        env:
+          CC: aarch64-linux-gnu-gcc
+          CFLAGS: -march=armv8-a -D__ARM_ARCH=8
         uses: PyO3/maturin-action@v1
         with:
           target: ${{ matrix.target }}
-          args: --release --out dist --find-interpreter
-          sccache: 'true'
+          args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12
           manylinux: auto
+
+      - name: Build wheels for x86_64
+        if: matrix.target == 'x86_64'
+        uses: PyO3/maturin-action@v1
+        with:
+          target: ${{ matrix.target }}
+          args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12
+          manylinux: auto
+
       - name: Upload wheels
         uses: actions/upload-artifact@v3
         with:
@@ -103,7 +119,6 @@ jobs:
       - uses: actions/setup-python@v4
         with:
           python-version: |
-            3.8
             3.9
             3.10
             3.11
@@ -114,7 +129,6 @@ jobs:
         with:
           target: ${{ matrix.target }}
           args: --release --out dist --find-interpreter
-          sccache: 'true'
       - name: Upload wheels
         uses: actions/upload-artifact@v3
         with:
@@ -141,8 +155,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [3.8, 3.9, "3.10", "3.11", "3.12"]
-        os: [ubuntu-latest, macos-12, windows-latest]
+        python-version: [3.9, "3.10", "3.11", "3.12"]
+        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
     runs-on: ${{ matrix.os }}
     steps:
     - name: Checkout

{bed_reader-1.0.4b2 → bed_reader-1.0.5}/.isort.cfg

@@ -1,5 +1,5 @@
 [settings]
-skip=.conda
+# skip=.conda
 profile=black
 multi_line_output = 3
 include_trailing_comma = true

{bed_reader-1.0.4b2 → bed_reader-1.0.5}/CHANGELOG.md

@@ -5,6 +5,10 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.05] - 2024-7-1
+
+- Add support for Python's Numpy 2
+
 ## [1.0.4] - 2024-4-24
 
 - Fix a minor bug in helper functions used by PySnpTools.