bec-server 4.3.2__tar.gz → 4.3.3__tar.gz

{bec_server-4.3.2 → bec_server-4.3.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.5
 Name: bec-server
-Version: 4.3.2
+Version: 4.3.3
 Summary: BEC server
 Project-URL: Bug Tracker, https://github.com/bec-project/bec/issues
 Project-URL: Homepage, https://github.com/bec-project/bec

{bec_server-4.3.2 → bec_server-4.3.3}/bec_server/file_writer/file_writer.py

@@ -9,6 +9,7 @@ from collections import defaultdict
 from copy import deepcopy
 
 import h5py
+import numpy as np
 from pydantic import BaseModel
 
 from bec_lib import messages, plugin_helper
@@ -164,6 +165,8 @@ class HDF5StorageWriter:
                     data = json.dumps(data)
                 elif not all(isinstance(x, type(data[0])) for x in data):
                     data = json.dumps(data)
+            if isinstance(data, np.ndarray) and data.dtype.kind == "U":
+                data = data.astype(h5py.string_dtype(encoding="utf-8"))
             dataset = container.create_dataset(name, data=data)
             self.add_attribute(dataset, val.attrs)
             self.add_content(dataset, val._storage)
@@ -175,7 +178,7 @@ class HDF5StorageWriter:
                     container.attrs["signal"] = "value"
         except Exception:
             content = traceback.format_exc()
-            logger.error(f"Failed to write dataset {name}: {content}")
+            logger.error(f"Failed to write dataset {container.name}/{name}: {content}")
         return
 
     def add_attribute(self, container: typing.Any, attributes: dict):

{bec_server-4.3.2 → bec_server-4.3.3}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "bec-server"
-version = "4.3.2"
+version = "4.3.3"
 description = "BEC server"
 requires-python = ">=3.11"
 classifiers = [

{bec_server-4.3.2 → bec_server-4.3.3}/tests/tests_file_writer/test_file_writer.py

@@ -10,7 +10,11 @@ from bec_lib import messages, plugin_helper
 from bec_lib.endpoints import MessageEndpoints
 from bec_server.file_writer import HDF5FileWriter
 from bec_server.file_writer.default_writer import DefaultFormat
-from bec_server.file_writer.file_writer import AdditionalScanMetadata, HDF5Storage
+from bec_server.file_writer.file_writer import (
+    AdditionalScanMetadata,
+    HDF5Storage,
+    HDF5StorageWriter,
+)
 from bec_server.file_writer.file_writer_manager import ScanStorage
 
 
@@ -647,3 +651,27 @@ def test_hdf5_writer_forwards_written_async_signals(tmp_path, hdf5_file_writer,
         )
 
     assert CapturingFormatForTest.last_written_async_signals == {"waveform": ["waveform_data"]}
+
+
+@pytest.mark.parametrize(
+    "data",
+    [
+        np.array(["cam.acquire_time", "roi1.selected_operations"]),
+        np.array([["µm", "曝光"], ["ROI", ""]]),
+        np.array([], dtype="U33"),
+        np.array("roi1.selected_operations"),
+    ],
+)
+def test_storage_writer_numpy_unicode(tmp_path, data):
+    """Configuration string arrays retain their shape and Unicode text in HDF5."""
+    storage = HDF5Storage()
+    dataset = storage.create_dataset("value", data=data)
+    dataset.attrs["description"] = "Configuration names"
+    path = tmp_path / "strings.h5"
+    with h5py.File(path, "w") as handle:
+        HDF5StorageWriter.write(storage._storage, handle)
+    with h5py.File(path, "r") as handle:
+        assert "value" in handle
+        assert handle["value"].shape == data.shape
+        np.testing.assert_array_equal(handle["value"].asstr()[()], data)
+        assert handle["value"].attrs["description"] == "Configuration names"