beakr-cli 0.3.2__tar.gz → 0.3.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (45) hide show
  1. beakr_cli-0.3.3/CHANGELOG.md +16 -0
  2. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/PKG-INFO +1 -1
  3. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/pyproject.toml +1 -1
  4. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/__init__.py +1 -1
  5. beakr_cli-0.3.3/src/beakr_cli/config.py +83 -0
  6. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/updates.py +1 -1
  7. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/test_auth_cli.py +1 -1
  8. beakr_cli-0.3.3/tests/test_config_permissions.py +95 -0
  9. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/uv.lock +1 -1
  10. beakr_cli-0.3.2/src/beakr_cli/config.py +0 -41
  11. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/commands/kb-audit.md +0 -0
  12. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/commands/kb-research.md +0 -0
  13. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/commands/kb-search.md +0 -0
  14. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/commands/kb-write.md +0 -0
  15. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/skills/beakr/SKILL.md +0 -0
  16. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/skills/beakr/examples/answer-org-question.md +0 -0
  17. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/skills/beakr/examples/research-topic.md +0 -0
  18. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/skills/beakr/examples/write-decision-page.md +0 -0
  19. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/skills/beakr/reference/auditing.md +0 -0
  20. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/skills/beakr/reference/provenance.md +0 -0
  21. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/skills/beakr/reference/research-workflow.md +0 -0
  22. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.claude/skills/beakr/reference/writing-pages.md +0 -0
  23. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.github/workflows/publish.yml +0 -0
  24. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/.gitignore +0 -0
  25. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/LICENSE +0 -0
  26. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/README.md +0 -0
  27. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/install.sh +0 -0
  28. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/citations.py +0 -0
  29. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/client.py +0 -0
  30. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/commands/__init__.py +0 -0
  31. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/commands/auth.py +0 -0
  32. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/commands/install.py +0 -0
  33. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/commands/kb.py +0 -0
  34. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/commands/workspace.py +0 -0
  35. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/main.py +0 -0
  36. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/mcp_server.py +0 -0
  37. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/src/beakr_cli/output.py +0 -0
  38. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/__init__.py +0 -0
  39. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/test_bundled_assets_vocabulary.py +0 -0
  40. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/test_citations.py +0 -0
  41. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/test_client.py +0 -0
  42. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/test_mcp_shared_vocabulary.py +0 -0
  43. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/test_mcp_source_rendering.py +0 -0
  44. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/test_packaging.py +0 -0
  45. {beakr_cli-0.3.2 → beakr_cli-0.3.3}/tests/test_updates.py +0 -0
@@ -0,0 +1,16 @@
1
+ # Changelog
2
+
3
+ ## 0.3.3 (2026-10-14)
4
+
5
+ Security fix. Upgrade with `beakr update` or `uv tool upgrade beakr-cli`.
6
+
7
+ - The API key saved by `beakr auth login` and `beakr install` lives in
8
+ `~/.beakr/config.json`. Earlier releases created `~/.beakr` and that file
9
+ with default permissions (usually readable by every user on the machine).
10
+ 0.3.3 creates the directory `0700` and the file `0600`, writes the file
11
+ atomically so the key is never briefly readable, and tightens a directory and
12
+ file an earlier release created the first time it reads them.
13
+ - No other behavior changes; 0.3.3 talks to the same API as 0.3.2.
14
+
15
+ If other people have accounts on a machine where you used an earlier release,
16
+ consider revoking that API key in the Beakr web app and logging in with a new one.
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.5
2
2
  Name: beakr-cli
3
- Version: 0.3.2
3
+ Version: 0.3.3
4
4
  Summary: CLI and MCP server for Beakr's knowledge base
5
5
  Project-URL: Homepage, https://thebeakr.com
6
6
  Project-URL: Repository, https://github.com/BeakrHub/beakr-cli
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
4
4
 
5
5
  [project]
6
6
  name = "beakr-cli"
7
- version = "0.3.2"
7
+ version = "0.3.3"
8
8
  description = "CLI and MCP server for Beakr's knowledge base"
9
9
  readme = "README.md"
10
10
  license = "MIT"
@@ -1,3 +1,3 @@
1
1
  """Beakr CLI -- command-line and MCP server for Beakr's knowledge base."""
2
2
 
3
- __version__ = "0.3.2"
3
+ __version__ = "0.3.3"
@@ -0,0 +1,83 @@
1
+ """Persistent configuration stored in ~/.beakr/config.json.
2
+
3
+ The file holds the API key, so it is readable by its owner only: the directory
4
+ is 0700 and the file 0600. Releases up to 0.3.2 wrote both with the default
5
+ umask (usually 0755/0644, readable by every local user); ``load`` and ``save``
6
+ tighten an existing directory and file the first time this version touches them.
7
+ """
8
+
9
+ from __future__ import annotations
10
+
11
+ import json
12
+ import os
13
+ import stat
14
+ import tempfile
15
+ from pathlib import Path
16
+ from typing import Any
17
+
18
+ CONFIG_DIR = Path.home() / ".beakr"
19
+ CONFIG_FILE = CONFIG_DIR / "config.json"
20
+
21
+ _DIR_MODE = 0o700
22
+ _FILE_MODE = 0o600
23
+ # POSIX permission bits mean nothing useful on Windows, where the profile
24
+ # directory is already private to the user.
25
+ _ENFORCE_MODES = os.name != "nt"
26
+
27
+
28
+ def _tighten(path: Path, mode: int) -> None:
29
+ """Remove group and other access from ``path`` if it has any."""
30
+ if not _ENFORCE_MODES:
31
+ return
32
+ try:
33
+ current = stat.S_IMODE(path.stat().st_mode)
34
+ if current & 0o077:
35
+ path.chmod(mode)
36
+ except OSError:
37
+ # Best effort: a file owned by someone else, or on a filesystem without
38
+ # POSIX modes, must not stop the command from running.
39
+ return
40
+
41
+
42
+ def ensure_dir() -> None:
43
+ """Create ~/.beakr owner-only, or tighten it if an older release made it."""
44
+ CONFIG_DIR.mkdir(mode=_DIR_MODE, parents=True, exist_ok=True)
45
+ _tighten(CONFIG_DIR, _DIR_MODE)
46
+
47
+
48
+ def load() -> dict[str, Any]:
49
+ if not CONFIG_FILE.exists():
50
+ return {}
51
+ _tighten(CONFIG_DIR, _DIR_MODE)
52
+ _tighten(CONFIG_FILE, _FILE_MODE)
53
+ return json.loads(CONFIG_FILE.read_text())
54
+
55
+
56
+ def save(data: dict[str, Any]) -> None:
57
+ ensure_dir()
58
+ # mkstemp creates the file 0600; renaming it over the config means the key
59
+ # is never on disk with wider permissions, even for an instant.
60
+ fd, tmp_name = tempfile.mkstemp(dir=CONFIG_DIR, prefix=".config.", suffix=".tmp")
61
+ try:
62
+ with os.fdopen(fd, "w") as handle:
63
+ handle.write(json.dumps(data, indent=2) + "\n")
64
+ os.replace(tmp_name, CONFIG_FILE)
65
+ except BaseException:
66
+ Path(tmp_name).unlink(missing_ok=True)
67
+ raise
68
+
69
+
70
+ def get(key: str, default: Any = None) -> Any:
71
+ return load().get(key, default)
72
+
73
+
74
+ def set_key(key: str, value: Any) -> None:
75
+ data = load()
76
+ data[key] = value
77
+ save(data)
78
+
79
+
80
+ def delete_key(key: str) -> None:
81
+ data = load()
82
+ data.pop(key, None)
83
+ save(data)
@@ -90,7 +90,7 @@ def _read_cache() -> tuple[str | None, datetime | None]:
90
90
 
91
91
  def _write_cache(latest: str, checked_at: datetime) -> None:
92
92
  try:
93
- config.CONFIG_DIR.mkdir(parents=True, exist_ok=True)
93
+ config.ensure_dir()
94
94
  _cache_file().write_text(
95
95
  json.dumps({"latest": latest, "checked_at": checked_at.isoformat()}) + "\n"
96
96
  )
@@ -10,7 +10,7 @@ def test_whoami_reports_environment_scope_over_stored_config(monkeypatch) -> Non
10
10
  "beakr_cli.commands.auth.api_get",
11
11
  lambda _path: {
12
12
  "user": {"display_name": "Sarah Chen"},
13
- "personal_org": {"name": "Yale University"},
13
+ "personal_org": {"name": "Example University"},
14
14
  },
15
15
  )
16
16
  monkeypatch.setattr("beakr_cli.commands.auth.config.get", lambda _key: "stale-config")
@@ -0,0 +1,95 @@
1
+ """~/.beakr and its config.json hold the API key, so they are owner-only.
2
+
3
+ Regression: up to 0.3.2 ``config.save`` created ``~/.beakr`` and wrote
4
+ ``config.json`` with the process umask (typically 0755 and 0644), so any local
5
+ user could read the stored API key. 0.3.3 writes them 0700/0600 and tightens
6
+ directories and files an older release already created.
7
+ """
8
+
9
+ from __future__ import annotations
10
+
11
+ import json
12
+ import os
13
+ import stat
14
+
15
+ import pytest
16
+ from typer.testing import CliRunner
17
+
18
+ from beakr_cli import config
19
+
20
+ pytestmark = pytest.mark.skipif(os.name == "nt", reason="POSIX permission bits")
21
+
22
+ KEY = "bk_live_permissions_test_key_value"
23
+
24
+
25
+ def _mode(path) -> int:
26
+ return stat.S_IMODE(path.stat().st_mode)
27
+
28
+
29
+ @pytest.fixture
30
+ def config_home(tmp_path, monkeypatch):
31
+ monkeypatch.setattr(config, "CONFIG_DIR", tmp_path / ".beakr")
32
+ monkeypatch.setattr(config, "CONFIG_FILE", tmp_path / ".beakr" / "config.json")
33
+ return tmp_path / ".beakr"
34
+
35
+
36
+ def test_saving_the_key_creates_an_owner_only_directory_and_file(config_home):
37
+ previous_umask = os.umask(0o022)
38
+ try:
39
+ config.set_key("api_key", KEY)
40
+ finally:
41
+ os.umask(previous_umask)
42
+
43
+ assert _mode(config_home) == 0o700
44
+ assert _mode(config.CONFIG_FILE) == 0o600
45
+ assert json.loads(config.CONFIG_FILE.read_text())["api_key"] == KEY
46
+ # The atomic write leaves no temporary file behind.
47
+ assert [p.name for p in config_home.iterdir()] == ["config.json"]
48
+
49
+
50
+ def test_reading_tightens_a_directory_and_file_an_older_release_wrote(config_home):
51
+ config_home.mkdir(mode=0o755)
52
+ config_home.chmod(0o755)
53
+ config.CONFIG_FILE.write_text(json.dumps({"api_key": KEY}) + "\n")
54
+ config.CONFIG_FILE.chmod(0o644)
55
+
56
+ assert config.get("api_key") == KEY
57
+
58
+ assert _mode(config_home) == 0o700
59
+ assert _mode(config.CONFIG_FILE) == 0o600
60
+
61
+
62
+ def test_saving_tightens_an_existing_world_readable_file(config_home):
63
+ config_home.mkdir(mode=0o755)
64
+ config_home.chmod(0o755)
65
+ config.CONFIG_FILE.write_text("{}\n")
66
+ config.CONFIG_FILE.chmod(0o644)
67
+
68
+ config.save({"api_key": KEY})
69
+
70
+ assert _mode(config_home) == 0o700
71
+ assert _mode(config.CONFIG_FILE) == 0o600
72
+
73
+
74
+ def test_update_check_cache_creates_the_directory_owner_only(config_home):
75
+ from datetime import datetime, timezone
76
+
77
+ from beakr_cli import updates
78
+
79
+ updates._write_cache("9.9.9", datetime.now(timezone.utc))
80
+
81
+ assert _mode(config_home) == 0o700
82
+
83
+
84
+ def test_failed_login_does_not_echo_the_api_key(config_home, monkeypatch):
85
+ from beakr_cli.commands import auth
86
+
87
+ def reject(_path, *args, **kwargs):
88
+ raise RuntimeError("401 Unauthorized")
89
+
90
+ monkeypatch.setattr(auth, "api_get", reject)
91
+ result = CliRunner().invoke(auth.app, ["login", "--api-key", KEY])
92
+
93
+ assert result.exit_code == 1
94
+ assert KEY not in result.output
95
+ assert config.get("api_key") is None
@@ -63,7 +63,7 @@ wheels = [
63
63
 
64
64
  [[package]]
65
65
  name = "beakr-cli"
66
- version = "0.3.2"
66
+ version = "0.3.3"
67
67
  source = { editable = "." }
68
68
  dependencies = [
69
69
  { name = "httpx" },
@@ -1,41 +0,0 @@
1
- """Persistent configuration stored in ~/.beakr/config.json."""
2
-
3
- from __future__ import annotations
4
-
5
- import json
6
- from pathlib import Path
7
- from typing import Any
8
-
9
- CONFIG_DIR = Path.home() / ".beakr"
10
- CONFIG_FILE = CONFIG_DIR / "config.json"
11
-
12
-
13
- def _ensure_dir() -> None:
14
- CONFIG_DIR.mkdir(parents=True, exist_ok=True)
15
-
16
-
17
- def load() -> dict[str, Any]:
18
- if not CONFIG_FILE.exists():
19
- return {}
20
- return json.loads(CONFIG_FILE.read_text())
21
-
22
-
23
- def save(data: dict[str, Any]) -> None:
24
- _ensure_dir()
25
- CONFIG_FILE.write_text(json.dumps(data, indent=2) + "\n")
26
-
27
-
28
- def get(key: str, default: Any = None) -> Any:
29
- return load().get(key, default)
30
-
31
-
32
- def set_key(key: str, value: Any) -> None:
33
- data = load()
34
- data[key] = value
35
- save(data)
36
-
37
-
38
- def delete_key(key: str) -> None:
39
- data = load()
40
- data.pop(key, None)
41
- save(data)
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