bbmapy 0.0.45__tar.gz → 0.0.46__tar.gz

{bbmapy-0.0.45 → bbmapy-0.0.46}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bbmapy
-Version: 0.0.45
+Version: 0.0.46
 Summary: A Python wrapper for BBTools
 Project-URL: Homepage, https://github.com/urineri/bbmapy
 Project-URL: Repository, https://github.com/urineri/bbmapy.git

{bbmapy-0.0.45 → bbmapy-0.0.46}/bbmapy/update.py

@@ -35,8 +35,14 @@ def ensure_java_availability(on_runtime=False, on_build=False,on_conda_build_tes
             print(f"prefix path: {prefix_path} from {pref_key}")
             break
     if prefix_path is None:
-        print(f"prefix path not found in {os.environ.keys()}")
-        raise ValueError(f"prefix path not found in {os.environ.keys()}")
+        print(f"prefix path not found in the usual conda suspects, here is the full list of env variables: {os.environ.keys()}")
+        print("trying to use the last bin folder in the path variable")
+        lbin_path = [p for p in os.environ['PATH'].split(':') if "bin" in p][-1]
+        if lbin_path:
+            prefix_path = os.path.dirname(lbin_path)
+            print(f"prefix path: {prefix_path}")
+        else:
+            raise ValueError(f"couldn't find a bin folder in the path variable")
     print("Java not found in PATH, installing...")
     version = '11'
     jre_path = jdk.install(version, jre=True, path=prefix_path,vendor="adoptium")

{bbmapy-0.0.45 → bbmapy-0.0.46}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "bbmapy"
-version = "0.0.45"  # Update this as needed
+version = "0.0.46"  # Update this as needed
 description = "A Python wrapper for BBTools"
 readme = "README.md"
 requires-python = ">=3.9"