bayinx 0.3.13__tar.gz → 0.3.14__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (43) hide show
  1. {bayinx-0.3.13 → bayinx-0.3.14}/PKG-INFO +1 -1
  2. {bayinx-0.3.13 → bayinx-0.3.14}/pyproject.toml +2 -2
  3. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/core/_optimization.py +6 -6
  4. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/core/_parameter.py +0 -2
  5. {bayinx-0.3.13 → bayinx-0.3.14}/.github/workflows/release_and_publish.yml +0 -0
  6. {bayinx-0.3.13 → bayinx-0.3.14}/.gitignore +0 -0
  7. {bayinx-0.3.13 → bayinx-0.3.14}/LICENSE +0 -0
  8. {bayinx-0.3.13 → bayinx-0.3.14}/README.md +0 -0
  9. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/__init__.py +0 -0
  10. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/constraints/__init__.py +0 -0
  11. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/constraints/lower.py +0 -0
  12. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/core/__init__.py +0 -0
  13. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/core/_constraint.py +0 -0
  14. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/core/_flow.py +0 -0
  15. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/core/_model.py +0 -0
  16. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/core/_variational.py +0 -0
  17. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/__init__.py +0 -0
  18. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/bernoulli.py +0 -0
  19. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/censored/__init__.py +0 -0
  20. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/censored/gamma2/__init__.py +0 -0
  21. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/censored/gamma2/r.py +0 -0
  22. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/censored/posnormal/__init__.py +0 -0
  23. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/censored/posnormal/r.py +0 -0
  24. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/gamma2.py +0 -0
  25. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/normal.py +0 -0
  26. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/posnormal.py +0 -0
  27. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/dists/uniform.py +0 -0
  28. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/__init__.py +0 -0
  29. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/opt/__init__.py +0 -0
  30. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/__init__.py +0 -0
  31. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/flows/__init__.py +0 -0
  32. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/flows/fullaffine.py +0 -0
  33. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/flows/planar.py +0 -0
  34. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/flows/radial.py +0 -0
  35. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/flows/sylvester.py +0 -0
  36. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/meanfield.py +0 -0
  37. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/normalizing_flow.py +0 -0
  38. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/mhx/vi/standard.py +0 -0
  39. {bayinx-0.3.13 → bayinx-0.3.14}/src/bayinx/py.typed +0 -0
  40. {bayinx-0.3.13 → bayinx-0.3.14}/tests/__init__.py +0 -0
  41. {bayinx-0.3.13 → bayinx-0.3.14}/tests/test_predictive.py +0 -0
  42. {bayinx-0.3.13 → bayinx-0.3.14}/tests/test_variational.py +0 -0
  43. {bayinx-0.3.13 → bayinx-0.3.14}/uv.lock +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bayinx
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- Version: 0.3.13
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+ Version: 0.3.14
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  Summary: Bayesian Inference with JAX
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  License-File: LICENSE
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  Requires-Python: >=3.12
@@ -1,6 +1,6 @@
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  [project]
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  name = "bayinx"
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- version = "0.3.13"
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+ version = "0.3.14"
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  description = "Bayesian Inference with JAX"
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  readme = "README.md"
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  requires-python = ">=3.12"
@@ -19,7 +19,7 @@ build-backend = "hatchling.build"
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  addopts = "-q --benchmark-min-rounds=30 --benchmark-columns=rounds,mean,median,stddev --benchmark-group-by=func"
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  [tool.bumpversion]
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- current_version = "0.3.13"
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+ current_version = "0.3.14"
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  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
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  serialize = ["{major}.{minor}.{patch}"]
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  search = "{current_version}"
@@ -1,4 +1,4 @@
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- from typing import Any, Tuple
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+ from typing import Any, Tuple, TypeVar
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  import equinox as eqx
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  import jax.lax as lax
@@ -9,16 +9,16 @@ from optax import GradientTransformation, OptState, Schedule
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  from ._model import Model
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-
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+ M = TypeVar("M", bound=Model)
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  @eqx.filter_jit
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  def optimize_model(
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- model: Model,
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+ model: M,
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  max_iters: int,
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  data: Any = None,
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  learning_rate: float = 1,
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  weight_decay: float = 0.0,
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  tolerance: float = 1e-4,
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- ) -> Model:
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+ ) -> M:
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  """
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  Optimize the dynamic parameters of the model.
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@@ -35,9 +35,9 @@ def optimize_model(
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  # Derive gradient for posterior
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  @eqx.filter_jit
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  @eqx.filter_grad
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- def eval_grad(dyn: Model):
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+ def eval_grad(dyn: M):
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  # Reconstruct model
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- model: Model = eqx.combine(dyn, static)
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+ model: M = eqx.combine(dyn, static)
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  # Evaluate posterior
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  return model.eval(data)
@@ -5,8 +5,6 @@ import jax.tree as jt
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  from jaxtyping import PyTree
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  T = TypeVar("T", bound=PyTree)
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-
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-
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  class Parameter(eqx.Module, Generic[T]):
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  """
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  A container for a parameter of a `Model`.
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