batoolset 0.1.5__tar.gz → 0.1.7__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (170) hide show
  1. {batoolset-0.1.5 → batoolset-0.1.7}/PKG-INFO +1 -1
  2. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/group.py +9 -5
  3. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/image2d.py +9 -0
  4. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/version.py +1 -1
  5. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset.egg-info/PKG-INFO +1 -1
  6. {batoolset-0.1.5 → batoolset-0.1.7}/LICENSE +0 -0
  7. {batoolset-0.1.5 → batoolset-0.1.7}/README.md +0 -0
  8. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/GUI/__init__.py +0 -0
  9. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/GUI/list_gui.py +0 -0
  10. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/GUI/multi_image_display.py +0 -0
  11. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/GUI/open.py +0 -0
  12. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/GUI/overlay_hints.py +0 -0
  13. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/GUI/paint2.py +0 -0
  14. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/GUI/scrollablepaint.py +0 -0
  15. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/IJ_ROIs/__init__.py +0 -0
  16. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/IJ_ROIs/tools.py +0 -0
  17. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/PATH/__init__.py +0 -0
  18. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/PATH/tools.py +0 -0
  19. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/SQLite_tools/__init__.py +0 -0
  20. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/SQLite_tools/tools.py +0 -0
  21. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/__init__.py +0 -0
  22. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/binary/__init__.py +0 -0
  23. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/binary/tools.py +0 -0
  24. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/binarytools/__init__.py +0 -0
  25. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/binarytools/cell_center_detector.py +0 -0
  26. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/clipboard_tools/__init__.py +0 -0
  27. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/clipboard_tools/tools.py +0 -0
  28. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/colors/__init__.py +0 -0
  29. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/colors/colorgen.py +0 -0
  30. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/colors/tools.py +0 -0
  31. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/command_line/__init__.py +0 -0
  32. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/command_line/tools.py +0 -0
  33. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/dialogs/__init__.py +0 -0
  34. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/dialogs/opensave.py +0 -0
  35. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/dicts/__init__.py +0 -0
  36. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/dicts/tools.py +0 -0
  37. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/dims/__init__.py +0 -0
  38. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/dims/tools.py +0 -0
  39. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/__init__.py +0 -0
  40. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/Position.py +0 -0
  41. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/__init__.py +0 -0
  42. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/automated_alignment_drawing_refactored.py +0 -0
  43. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/circle2d.py +0 -0
  44. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/compute_optimal_size_all_merged.py +0 -0
  45. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/ellipse2d.py +0 -0
  46. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/freehand2d.py +0 -0
  47. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/line2d.py +0 -0
  48. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/point2d.py +0 -0
  49. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/polygon2d.py +0 -0
  50. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/polyline2d.py +0 -0
  51. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/rect2d.py +0 -0
  52. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/rectangle2d.py +0 -0
  53. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/scalebar.py +0 -0
  54. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/serializablefont.py +0 -0
  55. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/serializableguiparams.py +0 -0
  56. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/square2d.py +0 -0
  57. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/textorientation.py +0 -0
  58. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/tools.py +0 -0
  59. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/transform2D.py +0 -0
  60. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/shapes/txt2d.py +0 -0
  61. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/widgets/__init__.py +0 -0
  62. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/widgets/col.py +0 -0
  63. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/widgets/image_group.py +0 -0
  64. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/widgets/image_organizer.py +0 -0
  65. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/widgets/paint.py +0 -0
  66. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/draw/widgets/vectorial.py +0 -0
  67. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/figure/__init__.py +0 -0
  68. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/figure/alignment.py +0 -0
  69. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/figure/column.py +0 -0
  70. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/figure/fig_tools.py +0 -0
  71. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/figure/minimal_debugger_scale_etc.py +0 -0
  72. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/figure/panel.py +0 -0
  73. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/figure/row.py +0 -0
  74. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/figure/user_selection.py +0 -0
  75. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/files/__init__.py +0 -0
  76. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/files/tools.py +0 -0
  77. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/images/__init__.py +0 -0
  78. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/images/centralstore.py +0 -0
  79. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/images/tools.py +0 -0
  80. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/img.py +0 -0
  81. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/linux/__init__.py +0 -0
  82. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/linux/tools.py +0 -0
  83. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/lists/__init__.py +0 -0
  84. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/lists/tools.py +0 -0
  85. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/luts/__init__.py +0 -0
  86. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/luts/lut_minimal_test.py +0 -0
  87. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/matplolib/__init__.py +0 -0
  88. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/matplolib/tools.py +0 -0
  89. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/np_tools/__init__.py +0 -0
  90. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/np_tools/tools.py +0 -0
  91. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/np_tools/trash.py +0 -0
  92. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/pandas_tools/__init__.py +0 -0
  93. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/pandas_tools/tools.py +0 -0
  94. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/partials/__init__.py +0 -0
  95. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/partials/tools.py +0 -0
  96. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/plot_tools/__init__.py +0 -0
  97. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/plot_tools/tools.py +0 -0
  98. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/pyqt/__init__.py +0 -0
  99. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/pyqt/pleasewaitdialog.py +0 -0
  100. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/pyqt/tools.py +0 -0
  101. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/re_tools/__init__.py +0 -0
  102. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/re_tools/tools.py +0 -0
  103. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/serialization/__init__.py +0 -0
  104. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/serialization/tools.py +0 -0
  105. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/sets/__init__.py +0 -0
  106. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/sets/tools.py +0 -0
  107. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/settings/__init__.py +0 -0
  108. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/settings/global_settings.py +0 -0
  109. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/strings/__init__.py +0 -0
  110. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/strings/tools.py +0 -0
  111. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/__init__.py +0 -0
  112. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/database/__init__.py +0 -0
  113. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/database/advanced_sql_plotter.py +0 -0
  114. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/database/my_qt_table.py +0 -0
  115. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/database/preview_and_edit_sqlite_db.py +0 -0
  116. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/database/sql.py +0 -0
  117. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/database/sql_column_name_dialog.py +0 -0
  118. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/TAmeasures.py +0 -0
  119. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/__init__.py +0 -0
  120. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/measurements3D/__init__.py +0 -0
  121. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/measurements3D/get_point_on_surface_if_centroid_is_bad.py +0 -0
  122. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/measurements3D/height_map_to_projection.py +0 -0
  123. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/measurements3D/measures3D.py +0 -0
  124. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/measurements3D/triangulate.py +0 -0
  125. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/nematic.py +0 -0
  126. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/measurements/nematic_measurements.py +0 -0
  127. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/segmentation/__init__.py +0 -0
  128. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/segmentation/neo_wshed.py +0 -0
  129. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/selections/__init__.py +0 -0
  130. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/selections/selection.py +0 -0
  131. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/__init__.py +0 -0
  132. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/last_tracking_based_on_matching_or_on_translation_from_mermaid_warp.py +0 -0
  133. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/local_to_track_correspondance.py +0 -0
  134. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/rapid_detection_of_vertices.py +0 -0
  135. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/registration.py +0 -0
  136. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/swap_detector_and_fixer.py +0 -0
  137. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/track_correction.py +0 -0
  138. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/tracking_error_detector_and_fixer.py +0 -0
  139. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/tracking/tracking_yet_another_approach_pyramidal_registration_n_neo_swapping_correction.py +0 -0
  140. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/utils/TA_tools.py +0 -0
  141. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/utils/__init__.py +0 -0
  142. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/ta/utils/rps_tools.py +0 -0
  143. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tests/__init__.py +0 -0
  144. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tests/rps_tools.py +0 -0
  145. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tests/tools.py +0 -0
  146. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tools/__init__.py +0 -0
  147. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tools/early_stopper_class.py +0 -0
  148. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tools/guided_data_recoverer.py +0 -0
  149. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tools/logger.py +0 -0
  150. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tools/mytimer.py +0 -0
  151. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tools/prompt_color.py +0 -0
  152. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/tools/qthandler.py +0 -0
  153. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/uitools/__init__.py +0 -0
  154. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/uitools/blinker.py +0 -0
  155. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/unsafe/__init__.py +0 -0
  156. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/unsafe/tools.py +0 -0
  157. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/utils/__init__.py +0 -0
  158. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/utils/commontools.py +0 -0
  159. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/utils/loadlist.py +0 -0
  160. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/xml/__init__.py +0 -0
  161. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/xml/tools.py +0 -0
  162. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/zarr/__init__.py +0 -0
  163. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/zip_tools/__init__.py +0 -0
  164. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset/zip_tools/tools.py +0 -0
  165. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset.egg-info/SOURCES.txt +0 -0
  166. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset.egg-info/dependency_links.txt +0 -0
  167. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset.egg-info/requires.txt +0 -0
  168. {batoolset-0.1.5 → batoolset-0.1.7}/batoolset.egg-info/top_level.txt +0 -0
  169. {batoolset-0.1.5 → batoolset-0.1.7}/setup.cfg +0 -0
  170. {batoolset-0.1.5 → batoolset-0.1.7}/setup.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: batoolset
3
- Version: 0.1.5
3
+ Version: 0.1.7
4
4
  Summary: An aggregate of functions I find useful
5
5
  Home-page: https://github.com/baigouy/batoolset
6
6
  Author: Benoit Aigouy
@@ -317,10 +317,6 @@ class Group(Rectangle2D):
317
317
  self.isText = isText # this is just for pure text groups (will have a different behaviour on double click)
318
318
  # self.scale = 1
319
319
 
320
- @classmethod
321
- def reset_count(cls):
322
- cls._count = 0
323
-
324
320
  # List-like behavior
325
321
  def __getitem__(self, key):
326
322
  # print(key)
@@ -364,7 +360,7 @@ class Group(Rectangle2D):
364
360
  if not self.isEmpty():
365
361
  try:
366
362
  # print('resizing', self, self.content)
367
- set_to_size(self,self.width() if self.orientation == 'X' else self.height())
363
+ set_to_size(self, self.width() if self.orientation == 'X' else self.height())
368
364
  except:
369
365
  # print('just for info for now, comment that lines in the future')
370
366
  traceback.print_exc()
@@ -883,6 +879,14 @@ class Group(Rectangle2D):
883
879
  def __setitem__(self, index, item):
884
880
  self.content[index] = item
885
881
 
882
+ def get_nested_groups(self):
883
+ groups = [self]
884
+ if self.content:
885
+ for group in self.content:
886
+ if isinstance(group, Group):
887
+ groups.extend(group.get_nested_groups())
888
+ return groups
889
+
886
890
  def contains(self, *__args):
887
891
  # hacked contains that checks whether a point or an image is contained in the stuff
888
892
  # see for images
@@ -311,6 +311,15 @@ class Image2D(Rectangle2D):
311
311
  self.px_to_unit_conversion_factor = 0
312
312
  # print()
313
313
 
314
+ def get_nb_channels(self):
315
+ if isinstance(self.img, np.ndarray):
316
+ guessed_dimensions =guess_dimensions(self.img)
317
+ if 'c' in guessed_dimensions:
318
+ return self.img.shape[guessed_dimensions.index('c')]
319
+ else:
320
+ return 1
321
+ else:
322
+ return 0
314
323
 
315
324
  def get_extra_dimensions(self, handle_proj=False):
316
325
  if not isinstance(self.img, np.ndarray):
@@ -1,6 +1,6 @@
1
1
  __MAJOR__ = 0
2
2
  __MINOR__ = 1
3
- __MICRO__ = 5
3
+ __MICRO__ = 7
4
4
  __RELEASE__ = '' # a #b # https://www.python.org/dev/peps/pep-0440/#public-version-identifiers --> alpha beta, ...
5
5
  __VERSION__ = ''.join([str(__MAJOR__), '.', str(__MINOR__), '.', str(__MICRO__)])
6
6
  __DESCRIPTION__ = """An aggregate of functions I find useful"""
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: batoolset
3
- Version: 0.1.5
3
+ Version: 0.1.7
4
4
  Summary: An aggregate of functions I find useful
5
5
  Home-page: https://github.com/baigouy/batoolset
6
6
  Author: Benoit Aigouy
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