basil-core 1.2.2__tar.gz → 1.2.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (122) hide show
  1. {basil_core-1.2.2 → basil_core-1.2.4}/Makefile +1 -1
  2. {basil_core-1.2.2 → basil_core-1.2.4}/PKG-INFO +1 -1
  3. basil_core-1.2.4/__version__.py +1 -0
  4. {basil_core-1.2.2 → basil_core-1.2.4}/meson.build +1 -1
  5. basil_core-1.2.4/src/basil_core/__version__.py +1 -0
  6. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/plots/axis.py +3 -3
  7. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/density/histogram_overhang.py +8 -2
  8. basil_core-1.2.2/__version__.py +0 -1
  9. basil_core-1.2.2/src/basil_core/__version__.py +0 -1
  10. {basil_core-1.2.2 → basil_core-1.2.4}/.gitignore +0 -0
  11. {basil_core-1.2.2 → basil_core-1.2.4}/.gitlab-ci.yml +0 -0
  12. {basil_core-1.2.2 → basil_core-1.2.4}/MANIFEST.in +0 -0
  13. {basil_core-1.2.2 → basil_core-1.2.4}/README.md +0 -0
  14. {basil_core-1.2.2 → basil_core-1.2.4}/REQUIREMENTS.txt +0 -0
  15. {basil_core-1.2.2 → basil_core-1.2.4}/originals/callister_priors_arxiv_2104_09508.py +0 -0
  16. {basil_core-1.2.2 → basil_core-1.2.4}/pyproject.toml +0 -0
  17. {basil_core-1.2.2 → basil_core-1.2.4}/setup.py.old +0 -0
  18. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/__init__.py +0 -0
  19. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/array_tools/__init__.py +0 -0
  20. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/array_tools/_indexer.c +0 -0
  21. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/array_tools/indexer.py +0 -0
  22. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/array_tools/meson.build +0 -0
  23. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/__init__.py +0 -0
  24. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/_basil_core_astro_const.h +0 -0
  25. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/coordinates/__init__.py +0 -0
  26. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/coordinates/_coordinates.c +0 -0
  27. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/coordinates/_spin.c +0 -0
  28. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/coordinates/_tides.c +0 -0
  29. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/coordinates/coordinates.py +0 -0
  30. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/coordinates/distance.py +0 -0
  31. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/coordinates/meson.build +0 -0
  32. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/meson.build +0 -0
  33. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/_DWD_RLOF.c +0 -0
  34. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/_GW.c +0 -0
  35. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/__init__.py +0 -0
  36. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/_decay.c +0 -0
  37. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/_kepler.c +0 -0
  38. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/decay.py +0 -0
  39. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/ecc_root_finder.py +0 -0
  40. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/meson.build +0 -0
  41. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/orbit.py +0 -0
  42. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/orbit/white_dwarf.py +0 -0
  43. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/priors/__init__.py +0 -0
  44. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/priors/callister_priors.py +0 -0
  45. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/priors/meson.build +0 -0
  46. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/AGND/AGND.py +0 -0
  47. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/AGND/Lyon2024/LICENSE.txt +0 -0
  48. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/AGND/Lyon2024/Lyon2024AGNPhi.dat +0 -0
  49. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/AGND/Lyon2024/__init__.py +0 -0
  50. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/AGND/Lyon2024/meson.build +0 -0
  51. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/AGND/__init__.py +0 -0
  52. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/AGND/meson.build +0 -0
  53. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/GSMF/Fontana.py +0 -0
  54. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/GSMF/Furlong2015.py +0 -0
  55. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/GSMF/Navarro.py +0 -0
  56. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/GSMF/Weibel.py +0 -0
  57. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/GSMF/__init__.py +0 -0
  58. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/GSMF/meson.build +0 -0
  59. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/GSMF/utils.py +0 -0
  60. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/IMF/IMF.py +0 -0
  61. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/IMF/__init__.py +0 -0
  62. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/IMF/meson.build +0 -0
  63. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/MZR/MZR.py +0 -0
  64. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/MZR/__init__.py +0 -0
  65. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/MZR/meson.build +0 -0
  66. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/MZR/utils.py +0 -0
  67. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/NSC_frac_of_GSM/NSC_frac_of_GSM.py +0 -0
  68. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/NSC_frac_of_GSM/__init__.py +0 -0
  69. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/NSC_frac_of_GSM/meson.build +0 -0
  70. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/NSC_mass_of_GSM/NSC_mass_of_GSM.py +0 -0
  71. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/NSC_mass_of_GSM/__init__.py +0 -0
  72. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/NSC_mass_of_GSM/meson.build +0 -0
  73. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/SFRD/SFRD.py +0 -0
  74. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/SFRD/__init__.py +0 -0
  75. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/SFRD/meson.build +0 -0
  76. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/SMBH_mass_of_GSM/SMBH_mass_of_GSM.py +0 -0
  77. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/SMBH_mass_of_GSM/__init__.py +0 -0
  78. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/SMBH_mass_of_GSM/meson.build +0 -0
  79. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/__init__.py +0 -0
  80. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/Peng2015/Fig2a.png +0 -0
  81. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/Peng2015/README.txt +0 -0
  82. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/Peng2015/__init__.py +0 -0
  83. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/Peng2015/meson.build +0 -0
  84. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/Peng2015/stellarMZR-SF.TXT +0 -0
  85. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/Peng2015/stellarMZR-passive.txt +0 -0
  86. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/__init__.py +0 -0
  87. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/early_frac.py +0 -0
  88. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/early_frac_of_GSM_metallicity/meson.build +0 -0
  89. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/astro/relations/meson.build +0 -0
  90. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/c_utils/dbg.h +0 -0
  91. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/meson.build +0 -0
  92. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/plots/__init__.py +0 -0
  93. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/plots/corner.py +0 -0
  94. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/plots/meson.build +0 -0
  95. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/plots/utils.py +0 -0
  96. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/random/__init__.py +0 -0
  97. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/random/meson.build +0 -0
  98. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/random/pcg64.py +0 -0
  99. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/random/sphere.py +0 -0
  100. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/__init__.py +0 -0
  101. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/_distance.c +0 -0
  102. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/_relative_entropy.c +0 -0
  103. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/_schechter.c +0 -0
  104. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/density/__init__.py +0 -0
  105. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/density/density_utils.py +0 -0
  106. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/density/meson.build +0 -0
  107. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/distance.py +0 -0
  108. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/hypercube.py +0 -0
  109. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/meson.build +0 -0
  110. {basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/schechter.py +0 -0
  111. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_callister_priors.py +0 -0
  112. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_coordinates.py +0 -0
  113. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_corner.py +0 -0
  114. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_cosmology_distance.py +0 -0
  115. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_distance.py +0 -0
  116. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_histogram_overhang.py +0 -0
  117. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_hypercube.py +0 -0
  118. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_indexer.py +0 -0
  119. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_orbit.py +0 -0
  120. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_random.py +0 -0
  121. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_relations.py +0 -0
  122. {basil_core-1.2.2 → basil_core-1.2.4}/tests/test_schechter.py +0 -0
{basil_core-1.2.2 → basil_core-1.2.4}/Makefile RENAMED
@@ -4,7 +4,7 @@ all: tests
4
4
 
5
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  ######## Setup ########
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6
 
7
- VERSION = 1.2.2
7
+ VERSION = 1.2.4
8
8
  DIST=dist/basil_core-${VERSION}.tar.gz
9
9
  version: clean
10
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  sed --in-place "s/version = .*/version = \"${VERSION}\"/g" pyproject.toml
{basil_core-1.2.2 → basil_core-1.2.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: basil_core
3
- Version: 1.2.2
3
+ Version: 1.2.4
4
4
  Summary: BASIL-CORE: Bayesian Analytic Sampling and Integrating Library - Compiled and low-dependency utilities
5
5
  Keywords: Gravitational Wave,Bayesian Inference
6
6
  Author-Email: "V. Delfavero" <vdfavero@cita.utoronto.ca>
basil_core-1.2.4/__version__.py ADDED
@@ -0,0 +1 @@
1
+ __version__ = '1.2.4'
{basil_core-1.2.2 → basil_core-1.2.4}/meson.build RENAMED
@@ -1,6 +1,6 @@
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  project('basil_core',
2
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  'c',
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- version: '1.2.2',
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+ version: '1.2.4',
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  default_options: ['warning_level=2', 'optimization=3', 'c_std=c99'],
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  meson_version: '>=0.64.0',
6
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  )
basil_core-1.2.4/src/basil_core/__version__.py ADDED
@@ -0,0 +1 @@
1
+ __version__ = '1.2.4'
{basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/plots/axis.py RENAMED
@@ -256,7 +256,7 @@ def ax_function_contour2d(
256
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  cmap = cmap,
257
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  vmin=0.,
258
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  vmax=np.max(rho),
259
- zorder=0,
259
+ zorder=2,
260
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  **kwargs
261
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  )
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@@ -313,7 +313,7 @@ def ax_function2d(
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  # Log scale colors
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  if log_scale:
315
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  colornorm="log"
316
- vmin = np.min(rho) + log_offset
316
+ vmin = np.min(rho[rho > 0]) + log_offset
317
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  else:
318
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  colornorm="linear"
319
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  vmin = 0.
@@ -414,7 +414,7 @@ def ax_scatter_contour2d(
414
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  cmap = cmap,
415
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  vmin=0.,
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  vmax=np.max(z),
417
- zorder=0,
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+ zorder=2,
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  **kwargs
419
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  )
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{basil_core-1.2.2 → basil_core-1.2.4}/src/basil_core/stats/density/histogram_overhang.py RENAMED
@@ -536,6 +536,8 @@ class HOGPEN(object):
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  min_bins=2,
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  max_bins=None,
538
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  criteria=None,
539
+ power_error=0.,
540
+ **gp_kwargs
539
541
  ):
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  '''Fit a marginal for some combinations of the dimensions
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543
 
@@ -626,7 +628,9 @@ class HOGPEN(object):
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  )
627
629
 
628
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  # Fit a gaussian process
629
- gp_fit_n = GP_function(x_train_n, y_train_n, y_error_n)
631
+ if power_error != 0.:
632
+ y_error_n = np.pow(y_error_n, power_error)
633
+ gp_fit_n = GP_function(x_train_n, y_train_n, y_error_n, **gp_kwargs)
630
634
 
631
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  # Evaluate fit residuals
632
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  if not initial_loop:
@@ -711,7 +715,9 @@ class HOGPEN(object):
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  y_error[y_train_p.size:] = np.sqrt(y_error_n**2 + y_resid_n**2)
712
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713
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  # Fit a gaussian process
714
- gp_fit = GP_function(x_train, y_train, y_error)
718
+ if power_error != 0.:
719
+ y_error = np.pow(y_error, power_error)
720
+ gp_fit = GP_function(x_train, y_train, y_error, **gp_kwargs)
715
721
 
716
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  return err, bins, gp_fit, x_train, y_train, y_error
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basil_core-1.2.2/__version__.py DELETED
@@ -1 +0,0 @@
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- __version__ = '1.2.2'
basil_core-1.2.2/src/basil_core/__version__.py DELETED
@@ -1 +0,0 @@
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- __version__ = '1.2.2'
{basil_core-1.2.2 → basil_core-1.2.4}/.gitignore RENAMED
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{basil_core-1.2.2 → basil_core-1.2.4}/.gitlab-ci.yml RENAMED
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{basil_core-1.2.2 → basil_core-1.2.4}/MANIFEST.in RENAMED
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{basil_core-1.2.2 → basil_core-1.2.4}/README.md RENAMED
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{basil_core-1.2.2 → basil_core-1.2.4}/REQUIREMENTS.txt RENAMED
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{basil_core-1.2.2 → basil_core-1.2.4}/pyproject.toml RENAMED
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{basil_core-1.2.2 → basil_core-1.2.4}/setup.py.old RENAMED
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