bam-masterdata 0.8.2__tar.gz → 0.8.3__tar.gz

{bam_masterdata-0.8.2 → bam_masterdata-0.8.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bam-masterdata
-Version: 0.8.2
+Version: 0.8.3
 Summary: The BAM Data Store utility tools and masterdata models wrapped in a Python package with a front-end web interface.
 Author-email: BAM Data Store <datastore@bam.de>
 Maintainer-email: "Jose M. Pizarro" <jose.pizarro-blanco@bam.de>

{bam_masterdata-0.8.2 → bam_masterdata-0.8.3}/bam_masterdata/_version.py

@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
 commit_id: COMMIT_ID
 __commit_id__: COMMIT_ID
 
-__version__ = version = '0.8.2'
-__version_tuple__ = version_tuple = (0, 8, 2)
+__version__ = version = '0.8.3'
+__version_tuple__ = version_tuple = (0, 8, 3)
 
-__commit_id__ = commit_id = 'ge06cea03b'
+__commit_id__ = commit_id = 'g9cef71dad'

{bam_masterdata-0.8.2/bam_masterdata/cli → bam_masterdata-0.8.3/bam_masterdata/excel}/excel_to_entities.py

@@ -160,6 +160,8 @@ class MasterdataExcelExtractor:
                     sheet_title=sheet_title,
                 )
         elif is_data:
+            # Normalize data type to uppercase
+            val = val.upper()
             if val not in [dt.value for dt in DataType]:
                 self.logger.error(
                     error_message
@@ -581,10 +583,15 @@ class MasterdataExcelExtractor:
                 "permId": extracted_columns["Code"][i],
                 "code": extracted_columns["Code"][i],
             }
-            for attr_key in ["Description", "Url template", "Label", "Official"]:
-                if extracted_columns.get(attr_key):
-                    value = extracted_columns[attr_key][i]
-                    terms_dict[extracted_columns["Code"][i]][attr_key] = value
+            for key, pybis_val in {
+                "Description": "descriptions",
+                "Url template": "url_template",
+                "Label": "label",
+                "Official": "official",
+            }.items():
+                if extracted_columns.get(key):
+                    value = extracted_columns[key][i]
+                    terms_dict[extracted_columns["Code"][i]][pybis_val] = value
 
         return terms_dict
 

{bam_masterdata-0.8.2 → bam_masterdata-0.8.3}/bam_masterdata.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bam-masterdata
-Version: 0.8.2
+Version: 0.8.3
 Summary: The BAM Data Store utility tools and masterdata models wrapped in a Python package with a front-end web interface.
 Author-email: BAM Data Store <datastore@bam.de>
 Maintainer-email: "Jose M. Pizarro" <jose.pizarro-blanco@bam.de>

{bam_masterdata-0.8.2 → bam_masterdata-0.8.3}/bam_masterdata.egg-info/SOURCES.txt

@@ -33,7 +33,6 @@ bam_masterdata/cli/__init__.py
 bam_masterdata/cli/cli.py
 bam_masterdata/cli/entities_to_excel.py
 bam_masterdata/cli/entities_to_rdf.py
-bam_masterdata/cli/excel_to_entities.py
 bam_masterdata/cli/fill_masterdata.py
 bam_masterdata/cli/run_parser.py
 bam_masterdata/datamodel/__init__.py

{bam_masterdata-0.8.2 → bam_masterdata-0.8.3}/docs/index.md

@@ -52,6 +52,7 @@ The **References** include a glossary of terms and the automatically generated A
 
 - [Glossary](references/glossary.md)
 - [API Reference](references/api.md)
+- [Extra](references/extra.md)
 
 </div>
 

{bam_masterdata-0.8.2 → bam_masterdata-0.8.3}/docs/references/api.md

@@ -62,7 +62,7 @@ cli/
 
 ---
 
-::: bam_masterdata.cli.excel_to_entities
+::: bam_masterdata.excel.excel_to_entities
     options:
       show_root_heading: true
       members:
@@ -189,4 +189,4 @@ utils/
     options:
       show_root_heading: true
 
----
+---

{bam_masterdata-0.8.2 → bam_masterdata-0.8.3}/docs/references/extra.md

@@ -367,16 +367,17 @@ for obj_code, obj_data in object_types.items():
 
 ```bash
 # Export all masterdata to Excel
-bam-masterdata export-to-excel masterdata_export.xlsx
+bam_masterdata export_to_excel masterdata_export.xlsx
 
 # Export specific entity types to JSON
-bam-masterdata export-to-json --entity-types object_types dataset_types output.json
+bam_masterdata export_to_json --entity-types object_types dataset_types output.json
 
 # Run consistency checker
-bam-masterdata checker --verbose
+bam_masterdata checker --verbose
 
 # Fill masterdata from OpenBIS
-bam-masterdata fill-masterdata --url https://openbis.example.com --username user
+# environment variables OPENBIS_USERNAME and OPENBIS_PASSWORD are required for authentication
+bam_masterdata fill_masterdata --url https://openbis.example.com
 ```
 
 ### How to Generate Code from Masterdata
@@ -503,4 +504,4 @@ for entity_data in batch_data:
 
 # Create all at once
 result = openbis.create_objects(entities_to_create)
-```
+```